Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:07:17 (6266): wrapper (7.7.26015): starting
12:07:17 (6266): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 12:07:17] Arguments: --nthreads 8
[2025-12-02 12:07:17] Threads: 8
[2025-12-02 12:07:17] Checking for CVMFS
[2025-12-02 12:07:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 12:07:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 12:07:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 12:07:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 12:07:19] 2.11.2.0 29171 293909 141280 153550 3 115 23497812 25165824 2288 130560 10 149028364 99.876 84766968 3455 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 12:07:19] CVMFS is ok
[2025-12-02 12:07:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 12:07:19] Checking for apptainer binary...
[2025-12-02 12:07:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 12:07:19] Running /usr/bin/apptainer --version
[2025-12-02 12:07:19] apptainer version 1.3.2-1.el7
[2025-12-02 12:07:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 12:07:39] cg-vwn473.simple-grid.lan
[2025-12-02 12:07:39] apptainer works
[2025-12-02 12:07:39] Set ATHENA_PROC_NUMBER=8
[2025-12-02 12:07:39] Set ATHENA_CORE_NUMBER=8
[2025-12-02 12:07:39] Starting ATLAS job with PandaID=6908987210
[2025-12-02 12:07:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 16:21:23]  *** The last 200 lines of the pilot log: ***
[2025-12-02 16:21:23] 2025-12-02 15:20:34,612 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 16:21:23] 2025-12-02 15:20:34,613 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-02 16:21:23] 2025-12-02 15:20:34,614 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6908987210/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,615 | INFO     | extracted standard info from prmon json
[2025-12-02 16:21:23] 2025-12-02 15:20:34,615 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 16:21:23] 2025-12-02 15:20:34,615 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 16:21:23] 2025-12-02 15:20:34,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-02 16:21:23] 2025-12-02 15:20:34,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-02 16:21:23] 2025-12-02 15:20:34,623 | INFO     | fitting pss+swap vs Time
[2025-12-02 16:21:23] 2025-12-02 15:20:34,624 | INFO     | sum of square deviations: 4075741535.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,626 | INFO     | sum of deviations: 133442662003.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,626 | INFO     | mean x: 1764681557.5
[2025-12-02 16:21:23] 2025-12-02 15:20:34,626 | INFO     | mean y: 2716326.254237288
[2025-12-02 16:21:23] 2025-12-02 15:20:34,626 | INFO     | intersect: -57774206620.94637
[2025-12-02 16:21:23] 2025-12-02 15:20:34,626 | INFO     | chi2: 7.269172940231136
[2025-12-02 16:21:23] 2025-12-02 15:20:34,627 | INFO     | sum of square deviations: 3822136780.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,628 | INFO     | sum of deviations: 156159848353.99985
[2025-12-02 16:21:23] 2025-12-02 15:20:34,628 | INFO     | mean x: 1764681405.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,629 | INFO     | mean y: 2729823.9956709957
[2025-12-02 16:21:23] 2025-12-02 15:20:34,629 | INFO     | intersect: -72096307039.33798
[2025-12-02 16:21:23] 2025-12-02 15:20:34,629 | INFO     | chi2: 6.471673391532312
[2025-12-02 16:21:23] 2025-12-02 15:20:34,629 | INFO     | current chi2=6.471673391532312 (change=10.970980540097944 %)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,629 | INFO     | right removable region: 230
[2025-12-02 16:21:23] 2025-12-02 15:20:34,630 | INFO     | sum of square deviations: 3822136780.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,631 | INFO     | sum of deviations: 42179283748.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,631 | INFO     | mean x: 1764681710.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,631 | INFO     | mean y: 2771165.4025974027
[2025-12-02 16:21:23] 2025-12-02 15:20:34,631 | INFO     | intersect: -19471416927.624218
[2025-12-02 16:21:23] 2025-12-02 15:20:34,632 | INFO     | chi2: 2.4628036563792532
[2025-12-02 16:21:23] 2025-12-02 15:20:34,632 | INFO     | current chi2=2.4628036563792532 (change=66.11989181397927 %)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,632 | INFO     | sum of square deviations: 3579276412.5
[2025-12-02 16:21:23] 2025-12-02 15:20:34,634 | INFO     | sum of deviations: -6583255206.500004
[2025-12-02 16:21:23] 2025-12-02 15:20:34,634 | INFO     | mean x: 1764681862.5
[2025-12-02 16:21:23] 2025-12-02 15:20:34,634 | INFO     | mean y: 2801625.8628318585
[2025-12-02 16:21:23] 2025-12-02 15:20:34,634 | INFO     | intersect: 3248527778.3744607
[2025-12-02 16:21:23] 2025-12-02 15:20:34,635 | INFO     | chi2: 0.9689521819804726
[2025-12-02 16:21:23] 2025-12-02 15:20:34,635 | INFO     | current chi2=0.9689521819804726 (change=60.656539571449244 %)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,646 | INFO     | sum of square deviations: 3346927870.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,648 | INFO     | sum of deviations: -17608137756.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,648 | INFO     | mean x: 1764682015.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,648 | INFO     | mean y: 2808838.6425339365
[2025-12-02 16:21:23] 2025-12-02 15:20:34,649 | INFO     | intersect: 9286774679.130054
[2025-12-02 16:21:23] 2025-12-02 15:20:34,649 | INFO     | chi2: 0.8931331626501733
[2025-12-02 16:21:23] 2025-12-02 15:20:34,649 | INFO     | current chi2=0.8931331626501733 (change=7.824846338168142 %)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,649 | INFO     | left removable region: 30
[2025-12-02 16:21:23] 2025-12-02 15:20:34,649 | INFO     | sum of square deviations: 2480604650.0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,651 | INFO     | sum of deviations: 3789751391.999997
[2025-12-02 16:21:23] 2025-12-02 15:20:34,651 | INFO     | mean x: 1764682289.5
[2025-12-02 16:21:23] 2025-12-02 15:20:34,651 | INFO     | mean y: 2830395.93
[2025-12-02 16:21:23] 2025-12-02 15:20:34,651 | INFO     | intersect: -2693168405.4389997
[2025-12-02 16:21:23] 2025-12-02 15:20:34,652 | INFO     | chi2: 0.02353160373519553
[2025-12-02 16:21:23] 2025-12-02 15:20:34,652 | INFO     | current memory leak: 1.53 B/s (using 200 data points, chi2=0.02)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,652 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,652 | INFO     | ..............................
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . Timing measurements:
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . get job = 0 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . initial setup = 26 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . payload setup = 142 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . stage-in = 0 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . payload execution = 14495 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . stage-out = 3 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | . log creation = 1 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,653 | INFO     | ..............................
[2025-12-02 16:21:23] 2025-12-02 15:20:34,759 | INFO     | 
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | job summary report
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | --------------------------------------------------
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | PanDA job id: 6908987210
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | task id: 46965017
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | errors: (none)
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | pilot state: finished 
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | transexitcode: 0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | exeerrorcode: 0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | exeerrordiag: 
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | exitcode: 0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | exitmsg: OK
[2025-12-02 16:21:23] 2025-12-02 15:20:34,760 | INFO     | cpuconsumptiontime: 52549 s
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | nevents: 400
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | neventsw: 0
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | pid: 16628
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | pgrp: 16628
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | corecount: 8
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | event service: False
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | sizes: {0: 2283152, 1: 2283838, 2: 2284037, 13: 2284037, 23: 2284093, 34: 2284121, 45: 2284277, 55: 2284305, 66: 2284333, 77: 2284361, 88: 2284417, 95: 2284987, 98
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | --------------------------------------------------
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | 
[2025-12-02 16:21:23] 2025-12-02 15:20:34,761 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-12-02 16:21:23] 2025-12-02 15:20:35,270 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,271 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | job 6908987210 has completed (purged errors)
[2025-12-02 16:21:23] 2025-12-02 15:20:35,272 | INFO     | overall cleanup function is called
[2025-12-02 16:21:23] 2025-12-02 15:20:36,281 | INFO     | --- collectZombieJob: --- 10, [16628]
[2025-12-02 16:21:23] 2025-12-02 15:20:36,281 | INFO     | zombie collector waiting for pid 16628
[2025-12-02 16:21:23] 2025-12-02 15:20:36,281 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 16:21:23] 2025-12-02 15:20:36,282 | INFO     | collected zombie processes
[2025-12-02 16:21:23] 2025-12-02 15:20:36,282 | INFO     | will attempt to kill all subprocesses of pid=16628
[2025-12-02 16:21:23] 2025-12-02 15:20:36,394 | INFO     | process IDs to be killed: [16628] (in reverse order)
[2025-12-02 16:21:23] 2025-12-02 15:20:36,757 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 16:21:23] 2025-12-02 15:20:36,757 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 16:21:23] 2025-12-02 15:20:36,760 | INFO     | did not find any defunct processes belonging to 16628
[2025-12-02 16:21:23] 2025-12-02 15:20:36,762 | INFO     | did not find any defunct processes belonging to 16628
[2025-12-02 16:21:23] 2025-12-02 15:20:36,778 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 16:21:23] 2025-12-02 15:20:36,779 | INFO     | ready for new job
[2025-12-02 16:21:23] 2025-12-02 15:20:36,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 16:21:23] 2025-12-02 15:20:36,781 | INFO     | ***************************************
[2025-12-02 16:21:23] 2025-12-02 15:20:36,781 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 16:21:23] 2025-12-02 15:20:36,781 | INFO     | ***************************************
[2025-12-02 16:21:23] 2025-12-02 15:20:36,781 | INFO     | 
[2025-12-02 16:21:23] 2025-12-02 15:20:36,781 | INFO     | pilot is running in a VM
[2025-12-02 16:21:23] 2025-12-02 15:20:36,781 | INFO     | architecture information:
[2025-12-02 16:21:23] 2025-12-02 15:20:36,786 | INFO     | executing command: cat /etc/os-release
[2025-12-02 16:21:23] 2025-12-02 15:20:36,938 | INFO     | cat /etc/os-release:
[2025-12-02 16:21:23] NAME="CentOS Linux"
[2025-12-02 16:21:23] VERSION="7 (Core)"
[2025-12-02 16:21:23] ID="centos"
[2025-12-02 16:21:23] ID_LIKE="rhel fedora"
[2025-12-02 16:21:23] VERSION_ID="7"
[2025-12-02 16:21:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 16:21:23] ANSI_COLOR="0;31"
[2025-12-02 16:21:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 16:21:23] HOME_URL="https://www.centos.org/"
[2025-12-02 16:21:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 16:21:23] 
[2025-12-02 16:21:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 16:21:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 16:21:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 16:21:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 16:21:23] 
[2025-12-02 16:21:23] 2025-12-02 15:20:36,938 | INFO     | ***************************************
[2025-12-02 16:21:23] 2025-12-02 15:20:37,441 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-12-02 16:21:23] 2025-12-02 15:20:37,705 | INFO     | sufficient remaining disk space (489975447552 B)
[2025-12-02 16:21:23] 2025-12-02 15:20:37,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 16:21:23] 2025-12-02 15:20:37,705 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 16:21:23] 2025-12-02 15:20:37,705 | INFO     | update_server=False
[2025-12-02 16:21:23] 2025-12-02 15:20:37,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 16:21:23] 2025-12-02 15:20:37,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:21:23] 2025-12-02 15:20:37,706 | INFO     | aborting loop
[2025-12-02 16:21:23] 2025-12-02 15:20:37,713 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 16:21:23] 2025-12-02 15:20:38,198 | INFO     | all payload control threads have been joined
[2025-12-02 16:21:23] 2025-12-02 15:20:38,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 16:21:23] 2025-12-02 15:20:38,625 | INFO     | all data control threads have been joined
[2025-12-02 16:21:23] 2025-12-02 15:20:38,711 | INFO     | [job] retrieve thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:38,712 | INFO     | [job] job monitor thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:38,809 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:38,868 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,202 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,204 | INFO     | [payload] control thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,225 | INFO     | all job control threads have been joined
[2025-12-02 16:21:23] 2025-12-02 15:20:39,226 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,370 | INFO     | [data] copytool_in thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,378 | INFO     | [job] validate thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,552 | INFO     | [payload] failed_post thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,631 | INFO     | [data] control thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:39,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:21:23] 2025-12-02 15:20:40,089 | INFO     | [payload] validate_post thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:40,231 | INFO     | [job] control thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:40,453 | INFO     | [data] copytool_out thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:40,780 | INFO     | [job] queue monitor thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:20:41,722 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 16:21:23] 2025-12-02 15:21:07,314 | INFO     | PID=10058 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 16:21:23] 2025-12-02 15:21:07,314 | INFO     | .. there are 9 such processes running
[2025-12-02 16:21:23] 2025-12-02 15:21:07,315 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 16:21:23] 2025-12-02 15:21:07,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 16:21:23] 2025-12-02 15:21:07,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 16:21:23] 2025-12-02 15:21:13,343 | INFO     | [monitor] cgroup control has ended
[2025-12-02 16:21:23] 2025-12-02 15:21:14,207 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838327846720)>', '<ExcThread(monitor, started 139837088724736)>']
[2025-12-02 16:21:23] 2025-12-02 15:21:14,355 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 16:21:23] 2025-12-02 15:21:14,355 | INFO     | [monitor] control thread has ended
[2025-12-02 16:21:23] 2025-12-02 15:21:19,233 | INFO     | all workflow threads have been joined
[2025-12-02 16:21:23] 2025-12-02 15:21:19,233 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 16:21:23] 2025-12-02 15:21:19,234 | INFO     | traces error code: 0
[2025-12-02 16:21:23] 2025-12-02 15:21:19,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 16:21:23] 2025-12-02 15:21:19,575 [wrapper] ==== pilot stdout END ====
[2025-12-02 16:21:23] 2025-12-02 15:21:19,625 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 16:21:23] 2025-12-02 15:21:19,727 [wrapper] pilotpid: 10058
[2025-12-02 16:21:23] 2025-12-02 15:21:19,775 [wrapper] Pilot exit status: 0
[2025-12-02 16:21:23] 2025-12-02 15:21:20,147 [wrapper] pandaids: 6908987210
[2025-12-02 16:21:23] 2025-12-02 15:21:20,872 [wrapper] cleanup supervisor_pilot  9109 10059
[2025-12-02 16:21:23] 2025-12-02 15:21:20,907 [wrapper] Test setup, not cleaning
[2025-12-02 16:21:23] 2025-12-02 15:21:20,979 [wrapper] apfmon messages muted
[2025-12-02 16:21:23] 2025-12-02 15:21:21,069 [wrapper] ==== wrapper stdout END ====
[2025-12-02 16:21:23] 2025-12-02 15:21:21,104 [wrapper] ==== wrapper stderr END ====
[2025-12-02 16:21:23]  *** Error codes and diagnostics ***
[2025-12-02 16:21:23]     "exeErrorCode": 0,
[2025-12-02 16:21:23]     "exeErrorDiag": "",
[2025-12-02 16:21:23]     "pilotErrorCode": 0,
[2025-12-02 16:21:23]     "pilotErrorDiag": "",
[2025-12-02 16:21:23]  *** Listing of results directory ***
[2025-12-02 16:21:23] total 465952
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc    576529 Nov 30 12:05 pilot3.tar.gz
[2025-12-02 16:21:23] -rwx------. 1 boinc boinc     36292 Nov 30 12:08 runpilot2-wrapper.sh
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc      5112 Nov 30 12:08 queuedata.json
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc       100 Dec  2 12:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 16:21:23] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 12:07 run_atlas
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc       105 Dec  2 12:07 job.xml
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc      6393 Dec  2 12:07 init_data.xml
[2025-12-02 16:21:23] -rw-r--r--. 2 boinc boinc 275944125 Dec  2 12:07 EVNT.46965009._000052.pool.root.1
[2025-12-02 16:21:23] -rw-r--r--. 2 boinc boinc     15847 Dec  2 12:07 start_atlas.sh
[2025-12-02 16:21:23] drwxrwx--x. 2 boinc boinc        68 Dec  2 12:07 shared
[2025-12-02 16:21:23] -rw-r--r--. 2 boinc boinc    589971 Dec  2 12:07 input.tar.gz
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc         0 Dec  2 12:07 boinc_lockfile
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc      2652 Dec  2 12:07 pandaJob.out
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc    986791 Dec  2 12:11 agis_schedconf.cvmfs.json
[2025-12-02 16:21:23] drwx------. 5 boinc boinc      4096 Dec  2 12:11 pilot3
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc 192311729 Dec  2 16:18 HITS.46965017._001368.pool.root.1
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc       531 Dec  2 16:18 boinc_task_state.xml
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc      1020 Dec  2 16:18 memory_monitor_summary.json
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc   1516240 Dec  2 16:18 agis_ddmendpoints.agis.ALL.json
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc    476840 Dec  2 16:18 log.46965017._001368.job.log.tgz.1
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc        95 Dec  2 16:20 pilot_heartbeat.json
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc      7777 Dec  2 16:20 heartbeat.json
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc      8192 Dec  2 16:21 boinc_mmap_file
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc        28 Dec  2 16:21 wrapper_checkpoint.txt
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc      4885 Dec  2 16:21 pilotlog.txt
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc   2015247 Dec  2 16:21 log.46965017._001368.job.log.1
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc       357 Dec  2 16:21 output.list
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc       620 Dec  2 16:21 runtime_log
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc   2508800 Dec  2 16:21 result.tar.gz
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc       656 Dec  2 16:21 W1rLDm8Suj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7LMKDmdRI9Xo.diag
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc      8833 Dec  2 16:21 runtime_log.err
[2025-12-02 16:21:23] -rw-r--r--. 1 boinc boinc     20875 Dec  2 16:21 stderr.txt
[2025-12-02 16:21:23] HITS file was successfully produced:
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc 192311729 Dec  2 16:18 shared/HITS.pool.root.1
[2025-12-02 16:21:23]  *** Contents of shared directory: ***
[2025-12-02 16:21:23] total 460336
[2025-12-02 16:21:23] -rw-r--r--. 2 boinc boinc 275944125 Dec  2 12:07 ATLAS.root_0
[2025-12-02 16:21:23] -rw-r--r--. 2 boinc boinc     15847 Dec  2 12:07 start_atlas.sh
[2025-12-02 16:21:23] -rw-r--r--. 2 boinc boinc    589971 Dec  2 12:07 input.tar.gz
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc 192311729 Dec  2 16:18 HITS.pool.root.1
[2025-12-02 16:21:23] -rw-------. 1 boinc boinc   2508800 Dec  2 16:21 result.tar.gz
16:21:24 (6266): run_atlas exited; CPU time 52731.640407
16:21:24 (6266): called boinc_finish(0)

</stderr_txt>
]]>

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