Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:18:06 (7916): wrapper (7.7.26015): starting
01:18:06 (7916): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 01:18:06] Arguments: --nthreads 8
[2025-12-03 01:18:06] Threads: 8
[2025-12-03 01:18:06] Checking for CVMFS
[2025-12-03 01:18:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 01:18:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 01:18:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 01:18:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 01:18:09] 2.11.2.0 4058 294692 139668 153575 2 16 21118547 25165824 2343 130560 11 149803367 99.879 87583258 2957 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-03 01:18:09] CVMFS is ok
[2025-12-03 01:18:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 01:18:09] Checking for apptainer binary...
[2025-12-03 01:18:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 01:18:09] Running /usr/bin/apptainer --version
[2025-12-03 01:18:09] apptainer version 1.3.2-1.el7
[2025-12-03 01:18:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 01:18:15] cg-vwn233.simple-grid.lan
[2025-12-03 01:18:15] apptainer works
[2025-12-03 01:18:15] Set ATHENA_PROC_NUMBER=8
[2025-12-03 01:18:15] Set ATHENA_CORE_NUMBER=8
[2025-12-03 01:18:16] Starting ATLAS job with PandaID=6904565285
[2025-12-03 01:18:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:41:14]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:41:14] 2025-12-03 07:40:36,167 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 08:41:14] 2025-12-03 07:40:36,168 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 08:41:14] 2025-12-03 07:40:36,170 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6904565285/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,171 | INFO     | extracted standard info from prmon json
[2025-12-03 08:41:14] 2025-12-03 07:40:36,171 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:41:14] 2025-12-03 07:40:36,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:41:14] 2025-12-03 07:40:36,171 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 08:41:14] 2025-12-03 07:40:36,171 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 08:41:14] 2025-12-03 07:40:36,185 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:41:14] 2025-12-03 07:40:36,186 | INFO     | sum of square deviations: 23303080645.5
[2025-12-03 08:41:14] 2025-12-03 07:40:36,191 | INFO     | sum of deviations: 113048799701.49997
[2025-12-03 08:41:14] 2025-12-03 07:40:36,191 | INFO     | mean x: 1764734642.5
[2025-12-03 08:41:14] 2025-12-03 07:40:36,191 | INFO     | mean y: 2540246.248815166
[2025-12-03 08:41:14] 2025-12-03 07:40:36,192 | INFO     | intersect: -8558608219.965063
[2025-12-03 08:41:14] 2025-12-03 07:40:36,192 | INFO     | chi2: 6.068078139359904
[2025-12-03 08:41:14] 2025-12-03 07:40:36,193 | INFO     | sum of square deviations: 22484544368.0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,204 | INFO     | sum of deviations: 140033728961.00003
[2025-12-03 08:41:14] 2025-12-03 07:40:36,204 | INFO     | mean x: 1764734490.0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,204 | INFO     | mean y: 2545222.2446043165
[2025-12-03 08:41:14] 2025-12-03 07:40:36,205 | INFO     | intersect: -10988220132.667063
[2025-12-03 08:41:14] 2025-12-03 07:40:36,205 | INFO     | chi2: 5.324883164184425
[2025-12-03 08:41:14] 2025-12-03 07:40:36,205 | INFO     | current chi2=5.324883164184425 (change=12.247617089088365 %)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,205 | INFO     | right removable region: 416
[2025-12-03 08:41:14] 2025-12-03 07:40:36,206 | INFO     | sum of square deviations: 22484544368.0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,212 | INFO     | sum of deviations: -33315292191.000008
[2025-12-03 08:41:14] 2025-12-03 07:40:36,212 | INFO     | mean x: 1764734795.0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,212 | INFO     | mean y: 2567499.772182254
[2025-12-03 08:41:14] 2025-12-03 07:40:36,212 | INFO     | intersect: 2617370556.165142
[2025-12-03 08:41:14] 2025-12-03 07:40:36,213 | INFO     | chi2: 1.8065667584178138
[2025-12-03 08:41:14] 2025-12-03 07:40:36,213 | INFO     | current chi2=1.8065667584178138 (change=70.22835374021105 %)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,214 | INFO     | sum of square deviations: 21685403803.0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,226 | INFO     | sum of deviations: -87579277551.49998
[2025-12-03 08:41:14] 2025-12-03 07:40:36,226 | INFO     | mean x: 1764734947.5
[2025-12-03 08:41:14] 2025-12-03 07:40:36,226 | INFO     | mean y: 2577815.225728155
[2025-12-03 08:41:14] 2025-12-03 07:40:36,226 | INFO     | intersect: 7129685669.705843
[2025-12-03 08:41:14] 2025-12-03 07:40:36,227 | INFO     | chi2: 1.023553864126659
[2025-12-03 08:41:14] 2025-12-03 07:40:36,227 | INFO     | current chi2=1.023553864126659 (change=43.3425939364076 %)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,228 | INFO     | sum of square deviations: 20905426388.0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,233 | INFO     | sum of deviations: -89765372036.00006
[2025-12-03 08:41:14] 2025-12-03 07:40:36,233 | INFO     | mean x: 1764735100.0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,233 | INFO     | mean y: 2578231.5798525796
[2025-12-03 08:41:14] 2025-12-03 07:40:36,233 | INFO     | intersect: 7580137275.647879
[2025-12-03 08:41:14] 2025-12-03 07:40:36,234 | INFO     | chi2: 1.0026809583293046
[2025-12-03 08:41:14] 2025-12-03 07:40:36,234 | INFO     | current chi2=1.0026809583293046 (change=2.039258169882846 %)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,234 | INFO     | left removable region: 30
[2025-12-03 08:41:14] 2025-12-03 07:40:36,235 | INFO     | sum of square deviations: 17833534372.5
[2025-12-03 08:41:14] 2025-12-03 07:40:36,239 | INFO     | sum of deviations: -24756141789.999996
[2025-12-03 08:41:14] 2025-12-03 07:40:36,240 | INFO     | mean x: 1764735374.5
[2025-12-03 08:41:14] 2025-12-03 07:40:36,240 | INFO     | mean y: 2576116.233160622
[2025-12-03 08:41:14] 2025-12-03 07:40:36,240 | INFO     | intersect: 2452345087.4539967
[2025-12-03 08:41:14] 2025-12-03 07:40:36,240 | INFO     | chi2: 0.15395881922212556
[2025-12-03 08:41:14] 2025-12-03 07:40:36,241 | INFO     | current memory leak: -1.39 B/s (using 386 data points, chi2=0.15)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,241 | INFO     | could have reported an average CPU frequency of 1999 MHz (17 samples)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | ..............................
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . Timing measurements:
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . get job = 0 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . initial setup = 5 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . payload setup = 123 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . stage-in = 0 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . payload execution = 25877 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . stage-out = 5 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | . log creation = 1 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,247 | INFO     | ..............................
[2025-12-03 08:41:14] 2025-12-03 07:40:36,386 | INFO     | 
[2025-12-03 08:41:14] 2025-12-03 07:40:36,387 | INFO     | job summary report
[2025-12-03 08:41:14] 2025-12-03 07:40:36,387 | INFO     | --------------------------------------------------
[2025-12-03 08:41:14] 2025-12-03 07:40:36,387 | INFO     | PanDA job id: 6904565285
[2025-12-03 08:41:14] 2025-12-03 07:40:36,387 | INFO     | task id: 47523845
[2025-12-03 08:41:14] 2025-12-03 07:40:36,387 | INFO     | errors: (none)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,387 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | pilot state: finished 
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | transexitcode: 0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | exeerrorcode: 0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | exeerrordiag: 
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | exitcode: 0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | exitmsg: OK
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | cpuconsumptiontime: 98016 s
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | nevents: 400
[2025-12-03 08:41:14] 2025-12-03 07:40:36,388 | INFO     | neventsw: 0
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | pid: 18310
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | pgrp: 18310
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | corecount: 8
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | event service: False
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | sizes: {0: 2283075, 1: 2283931, 2: 2283931, 13: 2283959, 23: 2284015, 34: 2284043, 45: 2284199, 56: 2284227, 66: 2284255, 77: 2284283, 88: 2284339, 91: 2284909, 98
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | --------------------------------------------------
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | 
[2025-12-03 08:41:14] 2025-12-03 07:40:36,389 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-12-03 08:41:14] 2025-12-03 07:40:36,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,945 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | job 6904565285 has completed (purged errors)
[2025-12-03 08:41:14] 2025-12-03 07:40:36,947 | INFO     | overall cleanup function is called
[2025-12-03 08:41:14] 2025-12-03 07:40:37,956 | INFO     | --- collectZombieJob: --- 10, [18310]
[2025-12-03 08:41:14] 2025-12-03 07:40:37,957 | INFO     | zombie collector waiting for pid 18310
[2025-12-03 08:41:14] 2025-12-03 07:40:37,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:41:14] 2025-12-03 07:40:37,957 | INFO     | collected zombie processes
[2025-12-03 08:41:14] 2025-12-03 07:40:37,957 | INFO     | will attempt to kill all subprocesses of pid=18310
[2025-12-03 08:41:14] 2025-12-03 07:40:38,077 | INFO     | process IDs to be killed: [18310] (in reverse order)
[2025-12-03 08:41:14] 2025-12-03 07:40:38,700 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:41:14] 2025-12-03 07:40:38,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:41:14] 2025-12-03 07:40:38,704 | INFO     | did not find any defunct processes belonging to 18310
[2025-12-03 08:41:14] 2025-12-03 07:40:38,707 | INFO     | did not find any defunct processes belonging to 18310
[2025-12-03 08:41:14] 2025-12-03 07:40:38,757 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:41:14] 2025-12-03 07:40:38,757 | INFO     | ready for new job
[2025-12-03 08:41:14] 2025-12-03 07:40:38,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:41:14] 2025-12-03 07:40:38,760 | INFO     | ***************************************
[2025-12-03 08:41:14] 2025-12-03 07:40:38,760 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:41:14] 2025-12-03 07:40:38,760 | INFO     | ***************************************
[2025-12-03 08:41:14] 2025-12-03 07:40:38,760 | INFO     | 
[2025-12-03 08:41:14] 2025-12-03 07:40:38,761 | INFO     | pilot is running in a VM
[2025-12-03 08:41:14] 2025-12-03 07:40:38,761 | INFO     | architecture information:
[2025-12-03 08:41:14] 2025-12-03 07:40:38,771 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:41:14] 2025-12-03 07:40:39,062 | INFO     | cat /etc/os-release:
[2025-12-03 08:41:14] NAME="CentOS Linux"
[2025-12-03 08:41:14] VERSION="7 (Core)"
[2025-12-03 08:41:14] ID="centos"
[2025-12-03 08:41:14] ID_LIKE="rhel fedora"
[2025-12-03 08:41:14] VERSION_ID="7"
[2025-12-03 08:41:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:41:14] ANSI_COLOR="0;31"
[2025-12-03 08:41:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:41:14] HOME_URL="https://www.centos.org/"
[2025-12-03 08:41:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:41:14] 
[2025-12-03 08:41:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:41:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:41:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:41:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:41:14] 
[2025-12-03 08:41:14] 2025-12-03 07:40:39,062 | INFO     | ***************************************
[2025-12-03 08:41:14] 2025-12-03 07:40:39,566 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-12-03 08:41:14] 2025-12-03 07:40:39,780 | INFO     | sufficient remaining disk space (493827915776 B)
[2025-12-03 08:41:14] 2025-12-03 07:40:39,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:41:14] 2025-12-03 07:40:39,780 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:41:14] 2025-12-03 07:40:39,781 | INFO     | update_server=False
[2025-12-03 08:41:14] 2025-12-03 07:40:39,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:41:14] 2025-12-03 07:40:39,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:41:14] 2025-12-03 07:40:39,782 | INFO     | aborting loop
[2025-12-03 08:41:14] 2025-12-03 07:40:39,783 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:41:14] 2025-12-03 07:40:40,625 | INFO     | all data control threads have been joined
[2025-12-03 08:41:14] 2025-12-03 07:40:40,787 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:40,788 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:40,799 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:40,834 | INFO     | [job] validate thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:40,903 | INFO     | all payload control threads have been joined
[2025-12-03 08:41:14] 2025-12-03 07:40:40,938 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:41,021 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:41,146 | INFO     | all job control threads have been joined
[2025-12-03 08:41:14] 2025-12-03 07:40:41,263 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:41,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:41:14] 2025-12-03 07:40:41,388 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:41,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:41:14] 2025-12-03 07:40:41,631 | INFO     | [data] control thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:41,910 | INFO     | [payload] control thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:41,934 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:42,088 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:42,152 | INFO     | [job] control thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:42,400 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:43,274 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:40:43,792 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:41:14] 2025-12-03 07:41:04,913 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:41:14] 2025-12-03 07:41:06,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380281276224)>', '<ExcThread(monitor, started 140379705820928)>']
[2025-12-03 08:41:14] 2025-12-03 07:41:08,547 | INFO     | PID=11717 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 08:41:14] 2025-12-03 07:41:08,547 | INFO     | .. there are 9 such processes running
[2025-12-03 08:41:14] 2025-12-03 07:41:08,548 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:41:14] 2025-12-03 07:41:08,549 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:41:14] 2025-12-03 07:41:08,549 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:41:14] 2025-12-03 07:41:08,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:41:14] 2025-12-03 07:41:08,549 | INFO     | [monitor] control thread has ended
[2025-12-03 08:41:14] 2025-12-03 07:41:11,417 | INFO     | all workflow threads have been joined
[2025-12-03 08:41:14] 2025-12-03 07:41:11,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:41:14] 2025-12-03 07:41:11,418 | INFO     | traces error code: 0
[2025-12-03 08:41:14] 2025-12-03 07:41:11,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:41:14] 2025-12-03 07:41:11,656 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:41:14] 2025-12-03 07:41:11,739 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:41:14] 2025-12-03 07:41:11,826 [wrapper] pilotpid: 11717
[2025-12-03 08:41:14] 2025-12-03 07:41:11,906 [wrapper] Pilot exit status: 0
[2025-12-03 08:41:14] 2025-12-03 07:41:12,247 [wrapper] pandaids: 6904565285
[2025-12-03 08:41:14] 2025-12-03 07:41:12,926 [wrapper] cleanup supervisor_pilot 26789 11718
[2025-12-03 08:41:14] 2025-12-03 07:41:12,996 [wrapper] Test setup, not cleaning
[2025-12-03 08:41:14] 2025-12-03 07:41:13,056 [wrapper] apfmon messages muted
[2025-12-03 08:41:14] 2025-12-03 07:41:13,095 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:41:14] 2025-12-03 07:41:13,115 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:41:14]  *** Error codes and diagnostics ***
[2025-12-03 08:41:14]     "exeErrorCode": 0,
[2025-12-03 08:41:14]     "exeErrorDiag": "",
[2025-12-03 08:41:14]     "pilotErrorCode": 0,
[2025-12-03 08:41:14]     "pilotErrorDiag": "",
[2025-12-03 08:41:14]  *** Listing of results directory ***
[2025-12-03 08:41:14] total 611316
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 08:41:14] -rwx------. 1 boinc boinc     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc      5112 Nov 29 10:25 queuedata.json
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc       100 Dec  3 01:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:41:14] -rwxr-xr-x. 1 boinc boinc      7986 Dec  3 01:18 run_atlas
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc       105 Dec  3 01:18 job.xml
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc      6392 Dec  3 01:18 init_data.xml
[2025-12-03 08:41:14] -rw-r--r--. 2 boinc boinc 310693430 Dec  3 01:18 EVNT.47523841._000002.pool.root.1
[2025-12-03 08:41:14] -rw-r--r--. 2 boinc boinc     15847 Dec  3 01:18 start_atlas.sh
[2025-12-03 08:41:14] drwxrwx--x. 2 boinc boinc        68 Dec  3 01:18 shared
[2025-12-03 08:41:14] -rw-r--r--. 2 boinc boinc    589966 Dec  3 01:18 input.tar.gz
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc         0 Dec  3 01:18 boinc_lockfile
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc      2618 Dec  3 01:18 pandaJob.out
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc    989284 Dec  3 01:22 agis_schedconf.cvmfs.json
[2025-12-03 08:41:14] drwx------. 5 boinc boinc      4096 Dec  3 01:22 pilot3
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc 303169171 Dec  3 08:37 HITS.47523845._000173.pool.root.1
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc       531 Dec  3 08:37 boinc_task_state.xml
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc      1020 Dec  3 08:38 memory_monitor_summary.json
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc   1516240 Dec  3 08:38 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc    627908 Dec  3 08:38 log.47523845._000173.job.log.tgz.1
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc      7771 Dec  3 08:40 heartbeat.json
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc        95 Dec  3 08:41 pilot_heartbeat.json
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc      8192 Dec  3 08:41 boinc_mmap_file
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc      4884 Dec  3 08:41 pilotlog.txt
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc        28 Dec  3 08:41 wrapper_checkpoint.txt
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc   3487685 Dec  3 08:41 log.47523845._000173.job.log.1
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc       357 Dec  3 08:41 output.list
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc       620 Dec  3 08:41 runtime_log
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc   4136960 Dec  3 08:41 result.tar.gz
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc      8817 Dec  3 08:41 runtime_log.err
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc       658 Dec  3 08:41 mElMDmiKWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqnLKDmTkIrcn.diag
[2025-12-03 08:41:14] -rw-r--r--. 1 boinc boinc     20889 Dec  3 08:41 stderr.txt
[2025-12-03 08:41:14] HITS file was successfully produced:
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc 303169171 Dec  3 08:37 shared/HITS.pool.root.1
[2025-12-03 08:41:14]  *** Contents of shared directory: ***
[2025-12-03 08:41:14] total 604112
[2025-12-03 08:41:14] -rw-r--r--. 2 boinc boinc 310693430 Dec  3 01:18 ATLAS.root_0
[2025-12-03 08:41:14] -rw-r--r--. 2 boinc boinc     15847 Dec  3 01:18 start_atlas.sh
[2025-12-03 08:41:14] -rw-r--r--. 2 boinc boinc    589966 Dec  3 01:18 input.tar.gz
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc 303169171 Dec  3 08:37 HITS.pool.root.1
[2025-12-03 08:41:14] -rw-------. 1 boinc boinc   4136960 Dec  3 08:41 result.tar.gz
08:41:16 (7916): run_atlas exited; CPU time 98365.300075
08:41:16 (7916): called boinc_finish(0)

</stderr_txt>
]]>

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