Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:51:43 (7037): wrapper (7.7.26015): starting
04:51:43 (7037): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 04:51:43] Arguments: --nthreads 12
[2025-12-01 04:51:43] Threads: 12
[2025-12-01 04:51:43] Checking for CVMFS
[2025-12-01 04:51:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 04:51:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 04:51:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 04:51:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 04:51:43] 2.11.2.0 2913 294725 96420 153512 1 69 12969346 20275201 1 130560 1 133105366 99.962 17747984 13991 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 04:51:43] CVMFS is ok
[2025-12-01 04:51:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 04:51:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 04:51:43] Further information can be found at the LHC@home message board.
[2025-12-01 04:51:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 04:51:43] Checking for apptainer binary...
[2025-12-01 04:51:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 04:51:43] Running /usr/bin/apptainer --version
[2025-12-01 04:51:43] apptainer version 1.3.2-1.el7
[2025-12-01 04:51:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 04:51:44] c-205-6.aglt2.org
[2025-12-01 04:51:44] apptainer works
[2025-12-01 04:51:44] Set ATHENA_PROC_NUMBER=12
[2025-12-01 04:51:44] Set ATHENA_CORE_NUMBER=12
[2025-12-01 04:51:44] Starting ATLAS job with PandaID=6901294338
[2025-12-01 04:51:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:27:25 (14799): wrapper (7.7.26015): starting
06:27:25 (14799): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 06:27:25] Arguments: --nthreads 12
[2025-12-01 06:27:25] Threads: 12
[2025-12-01 06:27:25] This job has been restarted, cleaning up previous attempt
[2025-12-01 06:27:25] Checking for CVMFS
[2025-12-01 06:27:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 06:27:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 06:27:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 06:27:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 06:27:25] 2.11.2.0 2913 294821 98356 153516 1 57 13060548 20275201 1 130560 1 133190993 99.962 17753382 13994 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 06:27:25] CVMFS is ok
[2025-12-01 06:27:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 06:27:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 06:27:25] Further information can be found at the LHC@home message board.
[2025-12-01 06:27:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 06:27:25] Checking for apptainer binary...
[2025-12-01 06:27:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 06:27:25] Running /usr/bin/apptainer --version
[2025-12-01 06:27:25] apptainer version 1.3.2-1.el7
[2025-12-01 06:27:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 06:27:27] c-205-6.aglt2.org
[2025-12-01 06:27:27] apptainer works
[2025-12-01 06:27:27] Set ATHENA_PROC_NUMBER=12
[2025-12-01 06:27:27] Set ATHENA_CORE_NUMBER=12
[2025-12-01 06:27:27] Starting ATLAS job with PandaID=6901294338
[2025-12-01 06:27:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 13:01:44]  *** The last 200 lines of the pilot log: ***
[2025-12-01 13:01:44] 2025-12-01 18:01:11,440 | INFO     | extracted standard info from prmon json
[2025-12-01 13:01:44] 2025-12-01 18:01:11,440 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 13:01:44] 2025-12-01 18:01:11,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 13:01:44] 2025-12-01 18:01:11,447 | INFO     | fitting pss+swap vs Time
[2025-12-01 13:01:44] 2025-12-01 18:01:11,447 | INFO     | sum of square deviations: 17972524875.11624
[2025-12-01 13:01:44] 2025-12-01 18:01:11,450 | INFO     | sum of deviations: 163827672275.13962
[2025-12-01 13:01:44] 2025-12-01 18:01:11,450 | INFO     | mean x: 1764600269.2635658
[2025-12-01 13:01:44] 2025-12-01 18:01:11,451 | INFO     | mean y: 3997631.4496124033
[2025-12-01 13:01:44] 2025-12-01 18:01:11,451 | INFO     | intersect: -16081129896.16856
[2025-12-01 13:01:44] 2025-12-01 18:01:11,451 | INFO     | chi2: 7.556464120810302
[2025-12-01 13:01:44] 2025-12-01 18:01:11,452 | INFO     | sum of square deviations: 17284905882.264324
[2025-12-01 13:01:44] 2025-12-01 18:01:11,455 | INFO     | sum of deviations: 355266548766.43427
[2025-12-01 13:01:44] 2025-12-01 18:01:11,455 | INFO     | mean x: 1764600116.7670157
[2025-12-01 13:01:44] 2025-12-01 18:01:11,455 | INFO     | mean y: 4040048.2408376965
[2025-12-01 13:01:44] 2025-12-01 18:01:11,455 | INFO     | intersect: -36264794604.768
[2025-12-01 13:01:44] 2025-12-01 18:01:11,456 | INFO     | chi2: 3.886063868579873
[2025-12-01 13:01:44] 2025-12-01 18:01:11,456 | INFO     | current chi2=3.886063868579873 (change=48.572985903846806 %)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,456 | INFO     | sum of square deviations: 16615054664.403162
[2025-12-01 13:01:44] 2025-12-01 18:01:11,459 | INFO     | sum of deviations: 457471869109.5967
[2025-12-01 13:01:44] 2025-12-01 18:01:11,460 | INFO     | mean x: 1764599964.270557
[2025-12-01 13:01:44] 2025-12-01 18:01:11,460 | INFO     | mean y: 4063297.729442971
[2025-12-01 13:01:44] 2025-12-01 18:01:11,460 | INFO     | intersect: -48581683796.746155
[2025-12-01 13:01:44] 2025-12-01 18:01:11,460 | INFO     | chi2: 2.7764248951833586
[2025-12-01 13:01:44] 2025-12-01 18:01:11,460 | INFO     | current chi2=2.7764248951833586 (change=28.55431642203096 %)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,461 | INFO     | sum of square deviations: 15962738659.032223
[2025-12-01 13:01:44] 2025-12-01 18:01:11,464 | INFO     | sum of deviations: 471922022173.25745
[2025-12-01 13:01:44] 2025-12-01 18:01:11,464 | INFO     | mean x: 1764599811.7741935
[2025-12-01 13:01:44] 2025-12-01 18:01:11,464 | INFO     | mean y: 4066627.5268817204
[2025-12-01 13:01:44] 2025-12-01 18:01:11,464 | INFO     | intersect: -52164519809.10119
[2025-12-01 13:01:44] 2025-12-01 18:01:11,465 | INFO     | chi2: 2.6351210740607725
[2025-12-01 13:01:44] 2025-12-01 18:01:11,465 | INFO     | current chi2=2.6351210740607725 (change=5.089416298194309 %)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,465 | INFO     | right removable region: 371
[2025-12-01 13:01:44] 2025-12-01 18:01:11,465 | INFO     | sum of square deviations: 17284867024.795815
[2025-12-01 13:01:44] 2025-12-01 18:01:11,469 | INFO     | sum of deviations: 7926777672.267014
[2025-12-01 13:01:44] 2025-12-01 18:01:11,469 | INFO     | mean x: 1764600421.7643979
[2025-12-01 13:01:44] 2025-12-01 18:01:11,469 | INFO     | mean y: 4032105.769633508
[2025-12-01 13:01:44] 2025-12-01 18:01:11,469 | INFO     | intersect: -805207282.8614293
[2025-12-01 13:01:44] 2025-12-01 18:01:11,469 | INFO     | chi2: 5.092728131589966
[2025-12-01 13:01:44] 2025-12-01 18:01:11,470 | INFO     | current chi2=5.092728131589966 (change=32.604349730653425 %)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,470 | INFO     | sum of square deviations: 16614953891.941647
[2025-12-01 13:01:44] 2025-12-01 18:01:11,473 | INFO     | sum of deviations: -23220268291.23076
[2025-12-01 13:01:44] 2025-12-01 18:01:11,473 | INFO     | mean x: 1764600574.2679045
[2025-12-01 13:01:44] 2025-12-01 18:01:11,473 | INFO     | mean y: 4039185.923076923
[2025-12-01 13:01:44] 2025-12-01 18:01:11,474 | INFO     | intersect: 2470160911.438878
[2025-12-01 13:01:44] 2025-12-01 18:01:11,474 | INFO     | chi2: 5.029149473630591
[2025-12-01 13:01:44] 2025-12-01 18:01:11,474 | INFO     | current chi2=5.029149473630591 (change=1.248420420579671 %)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,474 | INFO     | left removable region: 20
[2025-12-01 13:01:44] 2025-12-01 18:01:11,475 | INFO     | sum of square deviations: 13409044355.509964
[2025-12-01 13:01:44] 2025-12-01 18:01:11,477 | INFO     | sum of deviations: 246854597504.40176
[2025-12-01 13:01:44] 2025-12-01 18:01:11,478 | INFO     | mean x: 1764600391.2849002
[2025-12-01 13:01:44] 2025-12-01 18:01:11,478 | INFO     | mean y: 4120449.905982906
[2025-12-01 13:01:44] 2025-12-01 18:01:11,478 | INFO     | intersect: -32481395131.802853
[2025-12-01 13:01:44] 2025-12-01 18:01:11,478 | INFO     | chi2: 0.02192623158949383
[2025-12-01 13:01:44] 2025-12-01 18:01:11,478 | INFO     | current memory leak: 18.41 B/s (using 351 data points, chi2=0.02)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,479 | INFO     | could have reported an average CPU frequency of 2355 MHz (17 samples)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,479 | INFO     | ..............................
[2025-12-01 13:01:44] 2025-12-01 18:01:11,479 | INFO     | . Timing measurements:
[2025-12-01 13:01:44] 2025-12-01 18:01:11,479 | INFO     | . get job = 0 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,479 | INFO     | . initial setup = 1 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,479 | INFO     | . payload setup = 13 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,479 | INFO     | . stage-in = 0 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,480 | INFO     | . payload execution = 23564 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,480 | INFO     | . stage-out = 3 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,480 | INFO     | . log creation = 0 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,480 | INFO     | ..............................
[2025-12-01 13:01:44] 2025-12-01 18:01:11,562 | INFO     | 
[2025-12-01 13:01:44] 2025-12-01 18:01:11,562 | INFO     | job summary report
[2025-12-01 13:01:44] 2025-12-01 18:01:11,562 | INFO     | --------------------------------------------------
[2025-12-01 13:01:44] 2025-12-01 18:01:11,562 | INFO     | PanDA job id: 6901294338
[2025-12-01 13:01:44] 2025-12-01 18:01:11,562 | INFO     | task id: 47531111
[2025-12-01 13:01:44] 2025-12-01 18:01:11,562 | INFO     | errors: (none)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,563 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 13:01:44] 2025-12-01 18:01:11,563 | INFO     | pilot state: finished 
[2025-12-01 13:01:44] 2025-12-01 18:01:11,563 | INFO     | transexitcode: 0
[2025-12-01 13:01:44] 2025-12-01 18:01:11,563 | INFO     | exeerrorcode: 0
[2025-12-01 13:01:44] 2025-12-01 18:01:11,563 | INFO     | exeerrordiag: 
[2025-12-01 13:01:44] 2025-12-01 18:01:11,563 | INFO     | exitcode: 0
[2025-12-01 13:01:44] 2025-12-01 18:01:11,564 | INFO     | exitmsg: OK
[2025-12-01 13:01:44] 2025-12-01 18:01:11,564 | INFO     | cpuconsumptiontime: 259585 s
[2025-12-01 13:01:44] 2025-12-01 18:01:11,564 | INFO     | nevents: 1000
[2025-12-01 13:01:44] 2025-12-01 18:01:11,564 | INFO     | neventsw: 0
[2025-12-01 13:01:44] 2025-12-01 18:01:11,564 | INFO     | pid: 25595
[2025-12-01 13:01:44] 2025-12-01 18:01:11,564 | INFO     | pgrp: 25595
[2025-12-01 13:01:44] 2025-12-01 18:01:11,565 | INFO     | corecount: 12
[2025-12-01 13:01:44] 2025-12-01 18:01:11,565 | INFO     | event service: False
[2025-12-01 13:01:44] 2025-12-01 18:01:11,565 | INFO     | sizes: {0: 2284282, 1: 2284481, 6: 2284743, 11: 2284771, 23582: 2339768, 23586: 2348762, 23590: 2348946, 23595: 2349256}
[2025-12-01 13:01:44] 2025-12-01 18:01:11,565 | INFO     | --------------------------------------------------
[2025-12-01 13:01:44] 2025-12-01 18:01:11,565 | INFO     | 
[2025-12-01 13:01:44] 2025-12-01 18:01:11,565 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 13:01:44] 2025-12-01 18:01:11,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,590 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,590 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,590 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,591 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,591 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,593 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 13:01:44] 2025-12-01 18:01:11,593 | INFO     | job 6901294338 has completed (purged errors)
[2025-12-01 13:01:44] 2025-12-01 18:01:11,593 | INFO     | overall cleanup function is called
[2025-12-01 13:01:44] 2025-12-01 18:01:12,610 | INFO     | --- collectZombieJob: --- 10, [25595]
[2025-12-01 13:01:44] 2025-12-01 18:01:12,610 | INFO     | zombie collector waiting for pid 25595
[2025-12-01 13:01:44] 2025-12-01 18:01:12,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 13:01:44] 2025-12-01 18:01:12,611 | INFO     | collected zombie processes
[2025-12-01 13:01:44] 2025-12-01 18:01:12,611 | INFO     | will attempt to kill all subprocesses of pid=25595
[2025-12-01 13:01:44] 2025-12-01 18:01:12,703 | INFO     | process IDs to be killed: [25595] (in reverse order)
[2025-12-01 13:01:44] 2025-12-01 18:01:12,754 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 13:01:44] 2025-12-01 18:01:12,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 13:01:44] 2025-12-01 18:01:12,759 | INFO     | did not find any defunct processes belonging to 25595
[2025-12-01 13:01:44] 2025-12-01 18:01:12,761 | INFO     | did not find any defunct processes belonging to 25595
[2025-12-01 13:01:44] 2025-12-01 18:01:12,763 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 13:01:44] 2025-12-01 18:01:12,763 | INFO     | ready for new job
[2025-12-01 13:01:44] 2025-12-01 18:01:12,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 13:01:44] 2025-12-01 18:01:12,765 | INFO     | ***************************************
[2025-12-01 13:01:44] 2025-12-01 18:01:12,765 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 13:01:44] 2025-12-01 18:01:12,765 | INFO     | ***************************************
[2025-12-01 13:01:44] 2025-12-01 18:01:12,765 | INFO     | 
[2025-12-01 13:01:44] 2025-12-01 18:01:12,766 | INFO     | architecture information:
[2025-12-01 13:01:44] 2025-12-01 18:01:12,766 | INFO     | executing command: cat /etc/os-release
[2025-12-01 13:01:44] 2025-12-01 18:01:12,782 | INFO     | cat /etc/os-release:
[2025-12-01 13:01:44] NAME="CentOS Linux"
[2025-12-01 13:01:44] VERSION="7 (Core)"
[2025-12-01 13:01:44] ID="centos"
[2025-12-01 13:01:44] ID_LIKE="rhel fedora"
[2025-12-01 13:01:44] VERSION_ID="7"
[2025-12-01 13:01:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 13:01:44] ANSI_COLOR="0;31"
[2025-12-01 13:01:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 13:01:44] HOME_URL="https://www.centos.org/"
[2025-12-01 13:01:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 13:01:44] 
[2025-12-01 13:01:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 13:01:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 13:01:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 13:01:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 13:01:44] 
[2025-12-01 13:01:44] 2025-12-01 18:01:12,782 | INFO     | ***************************************
[2025-12-01 13:01:44] 2025-12-01 18:01:13,286 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 13:01:44] 2025-12-01 18:01:13,303 | INFO     | sufficient remaining disk space (28517072896 B)
[2025-12-01 13:01:44] 2025-12-01 18:01:13,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 13:01:44] 2025-12-01 18:01:13,303 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 13:01:44] 2025-12-01 18:01:13,303 | INFO     | update_server=False
[2025-12-01 13:01:44] 2025-12-01 18:01:13,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 13:01:44] 2025-12-01 18:01:13,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 13:01:44] 2025-12-01 18:01:13,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 13:01:44] 2025-12-01 18:01:13,319 | INFO     | all data control threads have been joined
[2025-12-01 13:01:44] 2025-12-01 18:01:13,468 | INFO     | all payload control threads have been joined
[2025-12-01 13:01:44] 2025-12-01 18:01:13,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 13:01:44] 2025-12-01 18:01:13,703 | INFO     | aborting loop
[2025-12-01 13:01:44] 2025-12-01 18:01:13,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 13:01:44] 2025-12-01 18:01:14,309 | INFO     | [job] retrieve thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:14,310 | INFO     | [job] queue monitor thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:14,320 | INFO     | [data] control thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:14,473 | INFO     | [payload] control thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:14,559 | INFO     | all job control threads have been joined
[2025-12-01 13:01:44] 2025-12-01 18:01:14,606 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:14,708 | INFO     | [job] job monitor thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:14,725 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,108 | INFO     | [payload] failed_post thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,565 | INFO     | [job] control thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,599 | INFO     | [data] copytool_in thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,673 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,740 | INFO     | [job] validate thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,809 | INFO     | [payload] validate_post thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:15,891 | INFO     | [data] copytool_out thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:17,310 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 13:01:44] 2025-12-01 18:01:18,638 | INFO     | [monitor] cgroup control has ended
[2025-12-01 13:01:44] 2025-12-01 18:01:20,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139813336901440)>', '<ExcThread(monitor, started 139812283590400)>']
[2025-12-01 13:01:44] 2025-12-01 18:01:25,066 | INFO     | all workflow threads have been joined
[2025-12-01 13:01:44] 2025-12-01 18:01:25,066 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 13:01:44] 2025-12-01 18:01:25,066 | INFO     | traces error code: 0
[2025-12-01 13:01:44] 2025-12-01 18:01:25,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 13:01:44] 2025-12-01 18:01:43,705 | INFO     | PID=18493 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 13:01:44] 2025-12-01 18:01:43,705 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 13:01:44] 2025-12-01 18:01:43,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 13:01:44] 2025-12-01 18:01:43,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 13:01:44] 2025-12-01 18:01:43,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 13:01:44] 2025-12-01 18:01:43,706 | INFO     | [monitor] control thread has ended
[2025-12-01 13:01:44] 2025-12-01 18:01:43,798 [wrapper] ==== pilot stdout END ====
[2025-12-01 13:01:44] 2025-12-01 18:01:43,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 13:01:44] 2025-12-01 18:01:43,806 [wrapper] pilotpid: 18493
[2025-12-01 13:01:44] 2025-12-01 18:01:43,810 [wrapper] Pilot exit status: 0
[2025-12-01 13:01:44] 2025-12-01 18:01:43,823 [wrapper] pandaids: 6901294338 6901294338
[2025-12-01 13:01:44] 2025-12-01 18:01:43,862 [wrapper] cleanup supervisor_pilot 17923 18494
[2025-12-01 13:01:44] 2025-12-01 18:01:43,866 [wrapper] Test setup, not cleaning
[2025-12-01 13:01:44] 2025-12-01 18:01:43,870 [wrapper] apfmon messages muted
[2025-12-01 13:01:44] 2025-12-01 18:01:43,874 [wrapper] ==== wrapper stdout END ====
[2025-12-01 13:01:44] 2025-12-01 18:01:43,878 [wrapper] ==== wrapper stderr END ====
[2025-12-01 13:01:44]  *** Error codes and diagnostics ***
[2025-12-01 13:01:44]     "exeErrorCode": 0,
[2025-12-01 13:01:44]     "exeErrorDiag": "",
[2025-12-01 13:01:44]     "pilotErrorCode": 0,
[2025-12-01 13:01:44]     "pilotErrorDiag": "",
[2025-12-01 13:01:44]  *** Listing of results directory ***
[2025-12-01 13:01:44] total 1446188
[2025-12-01 13:01:44] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-01 13:01:44] -rwx------ 1 boincer umatlas     36292 Nov 29 04:20 runpilot2-wrapper.sh
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:22 queuedata.json
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas       100 Dec  1 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 13:01:44] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 04:51 run_atlas
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas       105 Dec  1 04:51 job.xml
[2025-12-01 13:01:44] -rw-r--r-- 3 boincer umatlas 379967005 Dec  1 04:51 EVNT.47531104._000102.pool.root.1
[2025-12-01 13:01:44] -rw-r--r-- 3 boincer umatlas 379967005 Dec  1 04:51 ATLAS.root_0
[2025-12-01 13:01:44] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 04:51 start_atlas.sh
[2025-12-01 13:01:44] drwxrwx--x 2 boincer umatlas      4096 Dec  1 04:51 shared
[2025-12-01 13:01:44] -rw-r--r-- 2 boincer umatlas    590122 Dec  1 04:51 input.tar.gz
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas         0 Dec  1 04:51 boinc_lockfile
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas      2880 Dec  1 06:27 pandaJob.out
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas        57 Dec  1 06:27 setup.sh.local
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas    992117 Dec  1 06:27 agis_schedconf.cvmfs.json
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas       532 Dec  1 12:48 boinc_task_state.xml
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas      5955 Dec  1 12:55 init_data.xml
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas 705901344 Dec  1 13:00 HITS.47531111._001008.pool.root.1
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas      1061 Dec  1 13:00 memory_monitor_summary.json
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas   1516240 Dec  1 13:01 agis_ddmendpoints.agis.ALL.json
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas   2236610 Dec  1 13:01 log.47531111._001008.job.log.tgz.1
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas        96 Dec  1 13:01 pilot_heartbeat.json
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas     27790 Dec  1 13:01 heartbeat.json
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 13:01 boinc_mmap_file
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas        29 Dec  1 13:01 wrapper_checkpoint.txt
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas       745 Dec  1 13:01 pilotlog.txt
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas   3313732 Dec  1 13:01 log.47531111._001008.job.log.1
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas       353 Dec  1 13:01 output.list
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas       620 Dec  1 13:01 runtime_log
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas   5591040 Dec  1 13:01 result.tar.gz
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas       794 Dec  1 13:01 SKoKDmkIWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmymLKDm6l4R4m.diag
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas      9425 Dec  1 13:01 runtime_log.err
[2025-12-01 13:01:44] -rw-r--r-- 1 boincer umatlas     23263 Dec  1 13:01 stderr.txt
[2025-12-01 13:01:44] HITS file was successfully produced:
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas 705901344 Dec  1 13:00 shared/HITS.pool.root.1
[2025-12-01 13:01:44]  *** Contents of shared directory: ***
[2025-12-01 13:01:44] total 1066484
[2025-12-01 13:01:44] -rw-r--r-- 3 boincer umatlas 379967005 Dec  1 04:51 ATLAS.root_0
[2025-12-01 13:01:44] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 04:51 start_atlas.sh
[2025-12-01 13:01:44] -rw-r--r-- 2 boincer umatlas    590122 Dec  1 04:51 input.tar.gz
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas 705901344 Dec  1 13:00 HITS.pool.root.1
[2025-12-01 13:01:44] -rw------- 1 boincer umatlas   5591040 Dec  1 13:01 result.tar.gz
13:01:45 (14799): run_atlas exited; CPU time 252454.678683
13:01:45 (14799): called boinc_finish(0)

</stderr_txt>
]]>

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