Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:01:06 (988551): wrapper (7.7.26015): starting
16:01:06 (988551): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 16:01:06] Arguments: --nthreads 4
[2025-12-03 16:01:06] Threads: 4
[2025-12-03 16:01:06] Checking for CVMFS
[2025-12-03 16:01:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 16:01:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 16:01:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 16:01:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 16:01:06] 2.9.2.0 3303 6531 96544 153598 0 81 29265226 36864000 453 130560 0 2853920 99.984 229456 786 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-03 16:01:06] CVMFS is ok
[2025-12-03 16:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 16:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 16:01:06] Further information can be found at the LHC@home message board.
[2025-12-03 16:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 16:01:06] Checking for apptainer binary...
[2025-12-03 16:01:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 16:01:06] Running /usr/bin/apptainer --version
[2025-12-03 16:01:06] apptainer version 1.4.1-1.1
[2025-12-03 16:01:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 16:01:07] thA373a
[2025-12-03 16:01:07] apptainer works
[2025-12-03 16:01:07] Set ATHENA_PROC_NUMBER=4
[2025-12-03 16:01:07] Set ATHENA_CORE_NUMBER=4
[2025-12-03 16:01:07] Starting ATLAS job with PandaID=6901270858
[2025-12-03 16:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 21:52:48]  *** The last 200 lines of the pilot log: ***
[2025-12-03 21:52:48] 2025-12-03 20:52:11,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 21:52:48] 2025-12-03 20:52:11,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 21:52:48] 2025-12-03 20:52:11,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 21:52:48] 2025-12-03 20:52:11,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 21:52:48] 2025-12-03 20:52:11,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 21:52:48] 2025-12-03 20:52:11,129 | INFO     | job 6901270858 has completed (purged errors)
[2025-12-03 21:52:48] 2025-12-03 20:52:11,129 | INFO     | overall cleanup function is called
[2025-12-03 21:52:48] 2025-12-03 20:52:12,138 | INFO     | --- collectZombieJob: --- 10, [999586]
[2025-12-03 21:52:48] 2025-12-03 20:52:12,139 | INFO     | zombie collector waiting for pid 999586
[2025-12-03 21:52:48] 2025-12-03 20:52:12,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 21:52:48] 2025-12-03 20:52:12,139 | INFO     | collected zombie processes
[2025-12-03 21:52:48] 2025-12-03 20:52:12,139 | INFO     | will attempt to kill all subprocesses of pid=999586
[2025-12-03 21:52:48] 2025-12-03 20:52:12,185 | INFO     | process IDs to be killed: [999586] (in reverse order)
[2025-12-03 21:52:48] 2025-12-03 20:52:12,218 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 21:52:48] 2025-12-03 20:52:12,218 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 21:52:48] 2025-12-03 20:52:12,220 | INFO     | did not find any defunct processes belonging to 999586
[2025-12-03 21:52:48] 2025-12-03 20:52:12,221 | INFO     | did not find any defunct processes belonging to 999586
[2025-12-03 21:52:48] 2025-12-03 20:52:12,222 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 21:52:48] 2025-12-03 20:52:12,222 | INFO     | ready for new job
[2025-12-03 21:52:48] 2025-12-03 20:52:12,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 21:52:48] 2025-12-03 20:52:12,223 | INFO     | ***************************************
[2025-12-03 21:52:48] 2025-12-03 20:52:12,223 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 21:52:48] 2025-12-03 20:52:12,223 | INFO     | ***************************************
[2025-12-03 21:52:48] 2025-12-03 20:52:12,223 | INFO     | 
[2025-12-03 21:52:48] 2025-12-03 20:52:12,224 | INFO     | architecture information:
[2025-12-03 21:52:48] 2025-12-03 20:52:12,224 | INFO     | executing command: cat /etc/os-release
[2025-12-03 21:52:48] 2025-12-03 20:52:12,239 | INFO     | cat /etc/os-release:
[2025-12-03 21:52:48] NAME="CentOS Linux"
[2025-12-03 21:52:48] VERSION="7 (Core)"
[2025-12-03 21:52:48] ID="centos"
[2025-12-03 21:52:48] ID_LIKE="rhel fedora"
[2025-12-03 21:52:48] VERSION_ID="7"
[2025-12-03 21:52:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 21:52:48] ANSI_COLOR="0;31"
[2025-12-03 21:52:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 21:52:48] HOME_URL="https://www.centos.org/"
[2025-12-03 21:52:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 21:52:48] 
[2025-12-03 21:52:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 21:52:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 21:52:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 21:52:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 21:52:48] 
[2025-12-03 21:52:48] 2025-12-03 20:52:12,239 | INFO     | ***************************************
[2025-12-03 21:52:48] 2025-12-03 20:52:12,742 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 21:52:48] 2025-12-03 20:52:12,760 | INFO     | sufficient remaining disk space (329324167168 B)
[2025-12-03 21:52:48] 2025-12-03 20:52:12,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 21:52:48] 2025-12-03 20:52:12,761 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 21:52:48] 2025-12-03 20:52:12,761 | INFO     | update_server=False
[2025-12-03 21:52:48] 2025-12-03 20:52:12,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 21:52:48] 2025-12-03 20:52:12,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 21:52:48] 2025-12-03 20:52:12,878 | INFO     | all data control threads have been joined
[2025-12-03 21:52:48] 2025-12-03 20:52:13,022 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 21:52:48] 2025-12-03 20:52:13,022 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 21:52:48] 2025-12-03 20:52:13,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 21:52:48] 2025-12-03 20:52:13,022 | INFO     | will abort loop
[2025-12-03 21:52:48] 2025-12-03 20:52:13,719 | INFO     | all job control threads have been joined
[2025-12-03 21:52:48] 2025-12-03 20:52:13,766 | INFO     | [job] retrieve thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:13,856 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:13,866 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:13,884 | INFO     | [data] control thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:14,028 | INFO     | [job] job monitor thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:14,037 | INFO     | all payload control threads have been joined
[2025-12-03 21:52:48] 2025-12-03 20:52:14,459 | INFO     | [payload] failed_post thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:14,582 | INFO     | [data] copytool_in thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:14,725 | INFO     | [job] control thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:14,801 | INFO     | [data] copytool_out thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:15,003 | INFO     | [payload] validate_post thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:15,042 | INFO     | [payload] control thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:15,106 | INFO     | [job] validate thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:15,127 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:15,520 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 21:52:48] 2025-12-03 20:52:15,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 21:52:48] 2025-12-03 20:52:16,725 | INFO     | [job] queue monitor thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:19,523 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:23,612 | INFO     | job.realtimelogging is not enabled
[2025-12-03 21:52:48] 2025-12-03 20:52:24,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 21:52:48] 2025-12-03 20:52:42,044 | INFO     | [monitor] cgroup control has ended
[2025-12-03 21:52:48] 2025-12-03 20:52:43,122 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140200384812864)>', '<ExcThread(monitor, started 140199535306496)>']
[2025-12-03 21:52:48] 2025-12-03 20:52:43,489 | INFO     | PID=992336 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 21:52:48] 2025-12-03 20:52:43,490 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 21:52:48] 2025-12-03 20:52:43,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 21:52:48] 2025-12-03 20:52:43,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 21:52:48] 2025-12-03 20:52:43,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 21:52:48] 2025-12-03 20:52:43,490 | INFO     | [monitor] control thread has ended
[2025-12-03 21:52:48] 2025-12-03 20:52:48,148 | INFO     | all workflow threads have been joined
[2025-12-03 21:52:48] 2025-12-03 20:52:48,148 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 21:52:48] 2025-12-03 20:52:48,148 | INFO     | traces error code: 0
[2025-12-03 21:52:48] 2025-12-03 20:52:48,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 21:52:48] 2025-12-03 20:52:48,228 [wrapper] ==== pilot stdout END ====
[2025-12-03 21:52:48] 2025-12-03 20:52:48,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 21:52:48] 2025-12-03 20:52:48,237 [wrapper] pilotpid: 992336
[2025-12-03 21:52:48] 2025-12-03 20:52:48,241 [wrapper] Pilot exit status: 0
[2025-12-03 21:52:48] 2025-12-03 20:52:48,253 [wrapper] pandaids: 6901270858
[2025-12-03 21:52:48] 2025-12-03 20:52:48,275 [wrapper] cleanup supervisor_pilot 1040504 992337
[2025-12-03 21:52:48] 2025-12-03 20:52:48,279 [wrapper] Test setup, not cleaning
[2025-12-03 21:52:48] 2025-12-03 20:52:48,284 [wrapper] apfmon messages muted
[2025-12-03 21:52:48] 2025-12-03 20:52:48,288 [wrapper] ==== wrapper stdout END ====
[2025-12-03 21:52:48] 2025-12-03 20:52:48,292 [wrapper] ==== wrapper stderr END ====
[2025-12-03 21:52:48]  *** Error codes and diagnostics ***
[2025-12-03 21:52:48]     "exeErrorCode": 0,
[2025-12-03 21:52:48]     "exeErrorDiag": "",
[2025-12-03 21:52:48]     "pilotErrorCode": 0,
[2025-12-03 21:52:48]     "pilotErrorDiag": "",
[2025-12-03 21:52:48]  *** Listing of results directory ***
[2025-12-03 21:52:48] total 1057464
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 21:52:48] -rwx------ 1 boinc boinc     36292 Nov 29 10:19 runpilot2-wrapper.sh
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc      5112 Nov 29 10:20 queuedata.json
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc       100 Dec  3 16:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 21:52:48] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 16:01 run_atlas
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc       105 Dec  3 16:01 job.xml
[2025-12-03 21:52:48] -rw-r--r-- 2 boinc boinc 375805617 Dec  3 16:01 EVNT.47531104._000081.pool.root.1
[2025-12-03 21:52:48] -rw-r--r-- 2 boinc boinc    590117 Dec  3 16:01 input.tar.gz
[2025-12-03 21:52:48] -rw-r--r-- 2 boinc boinc     15847 Dec  3 16:01 start_atlas.sh
[2025-12-03 21:52:48] drwxrwx--x 2 boinc boinc      4096 Dec  3 16:01 shared
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc         0 Dec  3 16:01 boinc_setup_complete
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc      6379 Dec  3 16:01 init_data.xml
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc         0 Dec  3 16:01 boinc_lockfile
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc      2879 Dec  3 16:01 pandaJob.out
[2025-12-03 21:52:48] -rw------- 1 boinc boinc    985783 Dec  3 16:01 agis_schedconf.cvmfs.json
[2025-12-03 21:52:48] drwx------ 5 boinc boinc      4096 Dec  3 16:01 pilot3
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc       531 Dec  3 21:48 boinc_task_state.xml
[2025-12-03 21:52:48] -rw------- 1 boinc boinc 694544573 Dec  3 21:51 HITS.47531111._000792.pool.root.1
[2025-12-03 21:52:48] -rw------- 1 boinc boinc      1026 Dec  3 21:51 memory_monitor_summary.json
[2025-12-03 21:52:48] -rw------- 1 boinc boinc   1516240 Dec  3 21:52 agis_ddmendpoints.agis.ALL.json
[2025-12-03 21:52:48] -rw------- 1 boinc boinc   1303791 Dec  3 21:52 log.47531111._000792.job.log.tgz.1
[2025-12-03 21:52:48] -rw------- 1 boinc boinc        95 Dec  3 21:52 pilot_heartbeat.json
[2025-12-03 21:52:48] -rw------- 1 boinc boinc     27657 Dec  3 21:52 heartbeat.json
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc      8192 Dec  3 21:52 boinc_mmap_file
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc        28 Dec  3 21:52 wrapper_checkpoint.txt
[2025-12-03 21:52:48] -rw------- 1 boinc boinc      5009 Dec  3 21:52 pilotlog.txt
[2025-12-03 21:52:48] -rw------- 1 boinc boinc   2973195 Dec  3 21:52 log.47531111._000792.job.log.1
[2025-12-03 21:52:48] -rw------- 1 boinc boinc       353 Dec  3 21:52 output.list
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc       620 Dec  3 21:52 runtime_log
[2025-12-03 21:52:48] -rw------- 1 boinc boinc   4321280 Dec  3 21:52 result.tar.gz
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc      8903 Dec  3 21:52 runtime_log.err
[2025-12-03 21:52:48] -rw------- 1 boinc boinc       666 Dec  3 21:52 Lo8NDmKIWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmO2OKDmNz84on.diag
[2025-12-03 21:52:48] -rw-r--r-- 1 boinc boinc     11852 Dec  3 21:52 stderr.txt
[2025-12-03 21:52:48] HITS file was successfully produced:
[2025-12-03 21:52:48] -rw------- 1 boinc boinc 694544573 Dec  3 21:51 shared/HITS.pool.root.1
[2025-12-03 21:52:48]  *** Contents of shared directory: ***
[2025-12-03 21:52:48] total 1050092
[2025-12-03 21:52:48] -rw-r--r-- 2 boinc boinc 375805617 Dec  3 16:01 ATLAS.root_0
[2025-12-03 21:52:48] -rw-r--r-- 2 boinc boinc    590117 Dec  3 16:01 input.tar.gz
[2025-12-03 21:52:48] -rw-r--r-- 2 boinc boinc     15847 Dec  3 16:01 start_atlas.sh
[2025-12-03 21:52:48] -rw------- 1 boinc boinc 694544573 Dec  3 21:51 HITS.pool.root.1
[2025-12-03 21:52:48] -rw------- 1 boinc boinc   4321280 Dec  3 21:52 result.tar.gz
21:52:49 (988551): run_atlas exited; CPU time 82026.493260
21:52:49 (988551): called boinc_finish(0)

</stderr_txt>
]]>

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