Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:04:03 (31273): wrapper (7.7.26015): starting
04:04:03 (31273): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 04:04:03] Arguments: --nthreads 8
[2025-12-02 04:04:03] Threads: 8
[2025-12-02 04:04:03] Checking for CVMFS
[2025-12-02 04:04:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 04:04:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 04:04:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 04:04:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 04:04:06] 2.11.2.0 19741 293272 140736 153540 2 72 14850459 25165824 2554 130560 12 165797668 99.890 83650828 2663 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 04:04:06] CVMFS is ok
[2025-12-02 04:04:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 04:04:06] Checking for apptainer binary...
[2025-12-02 04:04:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 04:04:06] Running /usr/bin/apptainer --version
[2025-12-02 04:04:06] apptainer version 1.3.2-1.el7
[2025-12-02 04:04:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 04:04:22] cg-vwn339.simple-grid.lan
[2025-12-02 04:04:22] apptainer works
[2025-12-02 04:04:22] Set ATHENA_PROC_NUMBER=8
[2025-12-02 04:04:22] Set ATHENA_CORE_NUMBER=8
[2025-12-02 04:04:22] Starting ATLAS job with PandaID=6901271484
[2025-12-02 04:04:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/35 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 00:20:11]  *** The last 200 lines of the pilot log: ***
[2025-12-03 00:20:11] 2025-12-02 23:18:48,173 | INFO     | time since job start (72655s) is within the limit (172800.0s)
[2025-12-03 00:20:11] 2025-12-02 23:18:49,469 | INFO     | monitor loop #4956: job 0:6901271484 is in state 'finished'
[2025-12-03 00:20:11] 2025-12-02 23:18:49,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:20:11] 2025-12-02 23:18:50,181 | INFO     | time since job start (72657s) is within the limit (172800.0s)
[2025-12-03 00:20:11] 2025-12-02 23:18:51,975 | INFO     | monitor loop #4957: job 0:6901271484 is in state 'finished'
[2025-12-03 00:20:11] 2025-12-02 23:18:51,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:20:11] 2025-12-02 23:18:52,188 | INFO     | time since job start (72659s) is within the limit (172800.0s)
[2025-12-03 00:20:11] 2025-12-02 23:18:54,199 | INFO     | time since job start (72661s) is within the limit (172800.0s)
[2025-12-03 00:20:11] 2025-12-02 23:18:54,488 | INFO     | monitor loop #4958: job 0:6901271484 is in state 'finished'
[2025-12-03 00:20:11] 2025-12-02 23:18:54,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:20:11] 2025-12-02 23:18:56,207 | INFO     | time since job start (72663s) is within the limit (172800.0s)
[2025-12-03 00:20:11] 2025-12-02 23:18:56,993 | INFO     | monitor loop #4959: job 0:6901271484 is in state 'finished'
[2025-12-03 00:20:11] 2025-12-02 23:18:56,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,218 | INFO     | time since job start (72665s) is within the limit (172800.0s)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,561 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 00:20:11] 2025-12-02 23:18:58,562 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 00:20:11] 2025-12-02 23:18:58,563 | INFO     | using path: /var/lib/boinc/slots/35/PanDA_Pilot-6901271484/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,564 | INFO     | extracted standard info from prmon json
[2025-12-03 00:20:11] 2025-12-02 23:18:58,564 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 00:20:11] 2025-12-02 23:18:58,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 00:20:11] 2025-12-02 23:18:58,586 | INFO     | fitting pss+swap vs Time
[2025-12-03 00:20:11] 2025-12-02 23:18:58,588 | INFO     | sum of square deviations: 509477099582.4363
[2025-12-03 00:20:11] 2025-12-02 23:18:58,634 | INFO     | sum of deviations: 3242196658919.7363
[2025-12-03 00:20:11] 2025-12-02 23:18:58,634 | INFO     | mean x: 1764681429.54661
[2025-12-03 00:20:11] 2025-12-02 23:18:58,634 | INFO     | mean y: 3337974.859322034
[2025-12-03 00:20:11] 2025-12-02 23:18:58,634 | INFO     | intersect: -11226694228.007063
[2025-12-03 00:20:11] 2025-12-02 23:18:58,636 | INFO     | chi2: 20.982035048773074
[2025-12-03 00:20:11] 2025-12-02 23:18:58,637 | INFO     | sum of square deviations: 503028480916.93616
[2025-12-03 00:20:11] 2025-12-02 23:18:58,679 | INFO     | sum of deviations: 3747254385369.4272
[2025-12-03 00:20:11] 2025-12-02 23:18:58,680 | INFO     | mean x: 1764681277.0510638
[2025-12-03 00:20:11] 2025-12-02 23:18:58,680 | INFO     | mean y: 3349917.976170213
[2025-12-03 00:20:11] 2025-12-02 23:18:58,680 | INFO     | intersect: -13142445807.45684
[2025-12-03 00:20:11] 2025-12-02 23:18:58,681 | INFO     | chi2: 17.296538577850715
[2025-12-03 00:20:11] 2025-12-02 23:18:58,682 | INFO     | current chi2=17.296538577850715 (change=17.565009601572797 %)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,682 | INFO     | right removable region: 1174
[2025-12-03 00:20:11] 2025-12-02 23:18:58,684 | INFO     | sum of square deviations: 503027727566.93634
[2025-12-03 00:20:11] 2025-12-02 23:18:58,729 | INFO     | sum of deviations: 2643558816735.784
[2025-12-03 00:20:11] 2025-12-02 23:18:58,729 | INFO     | mean x: 1764681582.0510638
[2025-12-03 00:20:11] 2025-12-02 23:18:58,729 | INFO     | mean y: 3352130.4536170214
[2025-12-03 00:20:11] 2025-12-02 23:18:58,729 | INFO     | intersect: -9270569165.150469
[2025-12-03 00:20:11] 2025-12-02 23:18:58,731 | INFO     | chi2: 15.852455792109687
[2025-12-03 00:20:11] 2025-12-02 23:18:58,731 | INFO     | current chi2=15.852455792109687 (change=24.447482070922096 %)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,731 | INFO     | left removable region: 10
[2025-12-03 00:20:11] 2025-12-02 23:18:58,732 | INFO     | sum of square deviations: 489032061404.66907
[2025-12-03 00:20:11] 2025-12-02 23:18:58,779 | INFO     | sum of deviations: 2738373079296.0464
[2025-12-03 00:20:11] 2025-12-02 23:18:58,779 | INFO     | mean x: 1764681551.5609965
[2025-12-03 00:20:11] 2025-12-02 23:18:58,779 | INFO     | mean y: 3379674.8865979384
[2025-12-03 00:20:11] 2025-12-02 23:18:58,779 | INFO     | intersect: -9878091982.502926
[2025-12-03 00:20:11] 2025-12-02 23:18:58,781 | INFO     | chi2: 7.265944476821172
[2025-12-03 00:20:11] 2025-12-02 23:18:58,781 | INFO     | current memory leak: 5.60 B/s (using 1164 data points, chi2=7.27)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,782 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | ..............................
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . Timing measurements:
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . get job = 0 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . initial setup = 11 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . payload setup = 261 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . stage-in = 0 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . payload execution = 72117 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . stage-out = 5 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | . log creation = 2 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,783 | INFO     | ..............................
[2025-12-03 00:20:11] 2025-12-02 23:18:58,901 | INFO     | 
[2025-12-03 00:20:11] 2025-12-02 23:18:58,901 | INFO     | job summary report
[2025-12-03 00:20:11] 2025-12-02 23:18:58,901 | INFO     | --------------------------------------------------
[2025-12-03 00:20:11] 2025-12-02 23:18:58,901 | INFO     | PanDA job id: 6901271484
[2025-12-03 00:20:11] 2025-12-02 23:18:58,901 | INFO     | task id: 47531058
[2025-12-03 00:20:11] 2025-12-02 23:18:58,901 | INFO     | errors: (none)
[2025-12-03 00:20:11] 2025-12-02 23:18:58,901 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | pilot state: finished 
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | transexitcode: 0
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | exeerrorcode: 0
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | exeerrordiag: 
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | exitcode: 0
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | exitmsg: OK
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | cpuconsumptiontime: 269082 s
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | nevents: 1000
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | neventsw: 0
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | pid: 9954
[2025-12-03 00:20:11] 2025-12-02 23:18:58,902 | INFO     | pgrp: 9954
[2025-12-03 00:20:11] 2025-12-02 23:18:58,903 | INFO     | corecount: 8
[2025-12-03 00:20:11] 2025-12-02 23:18:58,903 | INFO     | event service: False
[2025-12-03 00:20:11] 2025-12-02 23:18:58,903 | INFO     | sizes: {0: 2284278, 1: 2284477, 12: 2284477, 23: 2284505, 33: 2284533, 44: 2284589, 55: 2284745, 65: 2284773, 76: 2284801, 83: 2285119, 87: 2285175, 72382: 2360618
[2025-12-03 00:20:11] 2025-12-02 23:18:58,903 | INFO     | --------------------------------------------------
[2025-12-03 00:20:11] 2025-12-02 23:18:58,903 | INFO     | 
[2025-12-03 00:20:11] 2025-12-02 23:18:58,903 | INFO     | executing command: ls -lF /var/lib/boinc/slots/35
[2025-12-03 00:20:11] 2025-12-02 23:18:59,387 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,388 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 00:20:11] 2025-12-02 23:18:59,393 | INFO     | job 6901271484 has completed (purged errors)
[2025-12-03 00:20:11] 2025-12-02 23:18:59,394 | INFO     | overall cleanup function is called
[2025-12-03 00:20:11] 2025-12-02 23:19:00,410 | INFO     | --- collectZombieJob: --- 10, [9954]
[2025-12-03 00:20:11] 2025-12-02 23:19:00,410 | INFO     | zombie collector waiting for pid 9954
[2025-12-03 00:20:11] 2025-12-02 23:19:00,410 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 00:20:11] 2025-12-02 23:19:00,410 | INFO     | collected zombie processes
[2025-12-03 00:20:11] 2025-12-02 23:19:00,410 | INFO     | will attempt to kill all subprocesses of pid=9954
[2025-12-03 00:20:11] 2025-12-02 23:19:00,523 | INFO     | process IDs to be killed: [9954] (in reverse order)
[2025-12-03 00:20:11] 2025-12-02 23:19:01,134 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 00:20:11] 2025-12-02 23:19:01,135 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 00:20:11] 2025-12-02 23:19:01,139 | INFO     | did not find any defunct processes belonging to 9954
[2025-12-03 00:20:11] 2025-12-02 23:19:01,143 | INFO     | did not find any defunct processes belonging to 9954
[2025-12-03 00:20:11] 2025-12-02 23:19:01,146 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 00:20:11] 2025-12-02 23:19:01,146 | INFO     | ready for new job
[2025-12-03 00:20:11] 2025-12-02 23:19:01,146 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 00:20:11] 2025-12-02 23:19:01,151 | INFO     | ***************************************
[2025-12-03 00:20:11] 2025-12-02 23:19:01,151 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 00:20:11] 2025-12-02 23:19:01,151 | INFO     | ***************************************
[2025-12-03 00:20:11] 2025-12-02 23:19:01,152 | INFO     | 
[2025-12-03 00:20:11] 2025-12-02 23:19:01,152 | INFO     | pilot is running in a VM
[2025-12-03 00:20:11] 2025-12-02 23:19:01,152 | INFO     | architecture information:
[2025-12-03 00:20:11] 2025-12-02 23:19:01,153 | INFO     | executing command: cat /etc/os-release
[2025-12-03 00:20:11] 2025-12-02 23:19:01,244 | INFO     | cat /etc/os-release:
[2025-12-03 00:20:11] NAME="CentOS Linux"
[2025-12-03 00:20:11] VERSION="7 (Core)"
[2025-12-03 00:20:11] ID="centos"
[2025-12-03 00:20:11] ID_LIKE="rhel fedora"
[2025-12-03 00:20:11] VERSION_ID="7"
[2025-12-03 00:20:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 00:20:11] ANSI_COLOR="0;31"
[2025-12-03 00:20:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 00:20:11] HOME_URL="https://www.centos.org/"
[2025-12-03 00:20:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 00:20:11] 
[2025-12-03 00:20:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 00:20:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 00:20:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 00:20:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 00:20:11] 
[2025-12-03 00:20:11] 2025-12-02 23:19:01,245 | INFO     | ***************************************
[2025-12-03 00:20:11] 2025-12-02 23:19:01,748 | INFO     | executing command: df -mP /var/lib/boinc/slots/35
[2025-12-03 00:20:11] 2025-12-02 23:19:01,977 | INFO     | sufficient remaining disk space (490844717056 B)
[2025-12-03 00:20:11] 2025-12-02 23:19:01,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 00:20:11] 2025-12-02 23:19:01,978 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 00:20:11] 2025-12-02 23:19:01,978 | INFO     | update_server=False
[2025-12-03 00:20:11] 2025-12-02 23:19:01,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 00:20:11] 2025-12-02 23:19:02,007 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 00:20:11] 2025-12-02 23:19:02,007 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 00:20:11] 2025-12-02 23:19:02,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:20:11] 2025-12-02 23:19:02,007 | INFO     | will abort loop
[2025-12-03 00:20:11] 2025-12-02 23:19:02,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 00:20:11] 2025-12-02 23:19:02,670 | INFO     | all data control threads have been joined
[2025-12-03 00:20:11] 2025-12-02 23:19:02,984 | INFO     | [job] retrieve thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,013 | INFO     | [job] job monitor thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,101 | INFO     | [payload] failed_post thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,202 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,278 | INFO     | all payload control threads have been joined
[2025-12-03 00:20:11] 2025-12-02 23:19:03,415 | INFO     | all job control threads have been joined
[2025-12-03 00:20:11] 2025-12-02 23:19:03,652 | INFO     | [payload] validate_post thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,667 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,667 | INFO     | [job] validate thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,676 | INFO     | [data] control thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,877 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:03,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:20:11] 2025-12-02 23:19:04,014 | INFO     | [data] copytool_in thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:04,046 | INFO     | [data] copytool_out thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:04,058 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:04,284 | INFO     | [payload] control thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:04,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 00:20:11] 2025-12-02 23:19:04,421 | INFO     | [job] control thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:04,921 | INFO     | [job] queue monitor thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:08,302 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 00:20:11] 2025-12-02 23:19:31,392 | INFO     | PID=2701 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 00:20:11] 2025-12-02 23:19:31,392 | INFO     | .. there are 9 such processes running
[2025-12-03 00:20:11] 2025-12-02 23:19:31,393 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 00:20:11] 2025-12-02 23:19:31,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 00:20:11] 2025-12-02 23:19:31,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 00:20:11] 2025-12-02 23:19:59,254 | INFO     | [monitor] cgroup control has ended
[2025-12-03 00:20:11] 2025-12-02 23:20:00,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183553935168)>', '<ExcThread(monitor, started 140182875522816)>']
[2025-12-03 00:20:11] 2025-12-02 23:20:01,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 00:20:11] 2025-12-02 23:20:01,575 | INFO     | [monitor] control thread has ended
[2025-12-03 00:20:11] 2025-12-02 23:20:05,903 | INFO     | all workflow threads have been joined
[2025-12-03 00:20:11] 2025-12-02 23:20:05,903 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 00:20:11] 2025-12-02 23:20:05,903 | INFO     | traces error code: 0
[2025-12-03 00:20:11] 2025-12-02 23:20:05,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 00:20:11] 2025-12-02 23:20:06,221 [wrapper] ==== pilot stdout END ====
[2025-12-03 00:20:11] 2025-12-02 23:20:06,267 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 00:20:11] 2025-12-02 23:20:06,320 [wrapper] pilotpid: 2701
[2025-12-03 00:20:11] 2025-12-02 23:20:06,362 [wrapper] Pilot exit status: 0
[2025-12-03 00:20:11] 2025-12-02 23:20:06,757 [wrapper] pandaids: 6901271484
[2025-12-03 00:20:11] 2025-12-02 23:20:07,809 [wrapper] cleanup supervisor_pilot 16219 2702
[2025-12-03 00:20:11] 2025-12-02 23:20:07,962 [wrapper] Test setup, not cleaning
[2025-12-03 00:20:11] 2025-12-02 23:20:08,090 [wrapper] apfmon messages muted
[2025-12-03 00:20:11] 2025-12-02 23:20:08,206 [wrapper] ==== wrapper stdout END ====
[2025-12-03 00:20:11] 2025-12-02 23:20:08,303 [wrapper] ==== wrapper stderr END ====
[2025-12-03 00:20:11]  *** Error codes and diagnostics ***
[2025-12-03 00:20:11]     "exeErrorCode": 0,
[2025-12-03 00:20:11]     "exeErrorDiag": "",
[2025-12-03 00:20:11]     "pilotErrorCode": 0,
[2025-12-03 00:20:11]     "pilotErrorDiag": "",
[2025-12-03 00:20:11]  *** Listing of results directory ***
[2025-12-03 00:20:11] total 1081912
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 00:20:11] -rwx------. 1 boinc boinc     36292 Nov 29 10:19 runpilot2-wrapper.sh
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc      5112 Nov 29 10:20 queuedata.json
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc       100 Dec  2 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 00:20:11] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 04:04 run_atlas
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc       105 Dec  2 04:04 job.xml
[2025-12-03 00:20:11] -rw-r--r--. 2 boinc boinc 377704777 Dec  2 04:04 EVNT.47531050._000591.pool.root.1
[2025-12-03 00:20:11] -rw-r--r--. 2 boinc boinc     15847 Dec  2 04:04 start_atlas.sh
[2025-12-03 00:20:11] drwxrwx--x. 2 boinc boinc        68 Dec  2 04:04 shared
[2025-12-03 00:20:11] -rw-r--r--. 2 boinc boinc    590116 Dec  2 04:04 input.tar.gz
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc      6388 Dec  2 04:04 init_data.xml
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc         0 Dec  2 04:04 boinc_lockfile
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc      2878 Dec  2 04:04 pandaJob.out
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc    992008 Dec  2 04:07 agis_schedconf.cvmfs.json
[2025-12-03 00:20:11] drwx------. 5 boinc boinc      4096 Dec  2 04:07 pilot3
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc       533 Dec  3 00:01 boinc_task_state.xml
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc 702000538 Dec  3 00:16 HITS.47531058._002061.pool.root.1
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc      1032 Dec  3 00:17 memory_monitor_summary.json
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc   1516240 Dec  3 00:17 agis_ddmendpoints.agis.ALL.json
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc   2406983 Dec  3 00:17 log.47531058._002061.job.log.tgz.1
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc     28087 Dec  3 00:18 heartbeat.json
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc        95 Dec  3 00:19 pilot_heartbeat.json
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc      8192 Dec  3 00:19 boinc_mmap_file
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc        29 Dec  3 00:19 wrapper_checkpoint.txt
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc      5070 Dec  3 00:20 pilotlog.txt
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc   9704146 Dec  3 00:20 log.47531058._002061.job.log.1
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc       353 Dec  3 00:20 output.list
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc       620 Dec  3 00:20 runtime_log
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc  12154880 Dec  3 00:20 result.tar.gz
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc      8833 Dec  3 00:20 runtime_log.err
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc       661 Dec  3 00:20 9sLODm9HWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd1OKDmxSwCWn.diag
[2025-12-03 00:20:11] -rw-r--r--. 1 boinc boinc     21414 Dec  3 00:20 stderr.txt
[2025-12-03 00:20:11] HITS file was successfully produced:
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc 702000538 Dec  3 00:16 shared/HITS.pool.root.1
[2025-12-03 00:20:11]  *** Contents of shared directory: ***
[2025-12-03 00:20:11] total 1066872
[2025-12-03 00:20:11] -rw-r--r--. 2 boinc boinc 377704777 Dec  2 04:04 ATLAS.root_0
[2025-12-03 00:20:11] -rw-r--r--. 2 boinc boinc     15847 Dec  2 04:04 start_atlas.sh
[2025-12-03 00:20:11] -rw-r--r--. 2 boinc boinc    590116 Dec  2 04:04 input.tar.gz
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc 702000538 Dec  3 00:16 HITS.pool.root.1
[2025-12-03 00:20:11] -rw-------. 1 boinc boinc  12154880 Dec  3 00:20 result.tar.gz
00:20:13 (31273): run_atlas exited; CPU time 269471.808059
00:20:13 (31273): called boinc_finish(0)

</stderr_txt>
]]>

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