Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:35:23 (3110502): wrapper (7.7.26015): starting
12:35:23 (3110502): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 12:35:23] Arguments: --nthreads 4
[2025-12-03 12:35:23] Threads: 4
[2025-12-03 12:35:23] Checking for CVMFS
[2025-12-03 12:35:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 12:35:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 12:35:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 12:35:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 12:35:23] 2.9.2.0 8783 21226 104096 153592 1 68 29630663 36864000 0 130560 1 8632756 99.960 928704 851 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-03 12:35:23] CVMFS is ok
[2025-12-03 12:35:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 12:35:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 12:35:23] Further information can be found at the LHC@home message board.
[2025-12-03 12:35:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 12:35:23] Checking for apptainer binary...
[2025-12-03 12:35:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 12:35:23] Running /usr/bin/apptainer --version
[2025-12-03 12:35:23] apptainer version 1.4.1-1.1
[2025-12-03 12:35:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 12:35:23] thA319
[2025-12-03 12:35:23] apptainer works
[2025-12-03 12:35:23] Set ATHENA_PROC_NUMBER=4
[2025-12-03 12:35:23] Set ATHENA_CORE_NUMBER=4
[2025-12-03 12:35:23] Starting ATLAS job with PandaID=6901172976
[2025-12-03 12:35:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 18:22:02]  *** The last 200 lines of the pilot log: ***
[2025-12-03 18:22:02] 2025-12-03 17:21:10,887 | INFO     | process IDs to be killed: [3121534] (in reverse order)
[2025-12-03 18:22:02] 2025-12-03 17:21:10,919 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 18:22:02] 2025-12-03 17:21:10,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 18:22:02] 2025-12-03 17:21:10,921 | INFO     | did not find any defunct processes belonging to 3121534
[2025-12-03 18:22:02] 2025-12-03 17:21:10,922 | INFO     | did not find any defunct processes belonging to 3121534
[2025-12-03 18:22:02] 2025-12-03 17:21:10,923 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 18:22:02] 2025-12-03 17:21:10,923 | INFO     | ready for new job
[2025-12-03 18:22:02] 2025-12-03 17:21:10,923 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 18:22:02] 2025-12-03 17:21:10,924 | INFO     | ***************************************
[2025-12-03 18:22:02] 2025-12-03 17:21:10,924 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 18:22:02] 2025-12-03 17:21:10,924 | INFO     | ***************************************
[2025-12-03 18:22:02] 2025-12-03 17:21:10,924 | INFO     | 
[2025-12-03 18:22:02] 2025-12-03 17:21:10,925 | INFO     | architecture information:
[2025-12-03 18:22:02] 2025-12-03 17:21:10,925 | INFO     | executing command: cat /etc/os-release
[2025-12-03 18:22:02] 2025-12-03 17:21:10,938 | INFO     | cat /etc/os-release:
[2025-12-03 18:22:02] NAME="CentOS Linux"
[2025-12-03 18:22:02] VERSION="7 (Core)"
[2025-12-03 18:22:02] ID="centos"
[2025-12-03 18:22:02] ID_LIKE="rhel fedora"
[2025-12-03 18:22:02] VERSION_ID="7"
[2025-12-03 18:22:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 18:22:02] ANSI_COLOR="0;31"
[2025-12-03 18:22:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 18:22:02] HOME_URL="https://www.centos.org/"
[2025-12-03 18:22:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 18:22:02] 
[2025-12-03 18:22:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 18:22:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 18:22:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 18:22:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 18:22:02] 
[2025-12-03 18:22:02] 2025-12-03 17:21:10,938 | INFO     | ***************************************
[2025-12-03 18:22:02] 2025-12-03 17:21:11,441 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | INFO     | sufficient remaining disk space (325301829632 B)
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | INFO     | update_server=False
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:22:02] 2025-12-03 17:21:11,459 | INFO     | aborting loop
[2025-12-03 18:22:02] 2025-12-03 17:21:11,460 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:22:02] 2025-12-03 17:21:11,460 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 18:22:02] 2025-12-03 17:21:11,574 | INFO     | all data control threads have been joined
[2025-12-03 18:22:02] 2025-12-03 17:21:12,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 18:22:02] 2025-12-03 17:21:12,382 | INFO     | all job control threads have been joined
[2025-12-03 18:22:02] 2025-12-03 17:21:12,465 | INFO     | [job] retrieve thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:12,465 | INFO     | [job] job monitor thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:12,465 | INFO     | [job] queue monitor thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:12,494 | INFO     | all payload control threads have been joined
[2025-12-03 18:22:02] 2025-12-03 17:21:12,520 | INFO     | [payload] failed_post thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:12,542 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:12,580 | INFO     | [data] control thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:12,584 | INFO     | [data] copytool_in thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:12,610 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:13,252 | INFO     | [payload] validate_post thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:13,387 | INFO     | [job] control thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:13,500 | INFO     | [payload] control thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:13,729 | INFO     | [job] validate thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:13,781 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:14,106 | INFO     | [data] copytool_out thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:15,467 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:22,096 | INFO     | job.realtimelogging is not enabled
[2025-12-03 18:22:02] 2025-12-03 17:21:23,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 18:22:02] 2025-12-03 17:21:55,881 | INFO     | [monitor] cgroup control has ended
[2025-12-03 18:22:02] 2025-12-03 17:21:57,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139662341662528)>', '<ExcThread(monitor, started 139661187999488)>']
[2025-12-03 18:22:02] 2025-12-03 17:21:58,699 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 18:22:02] 2025-12-03 17:21:58,699 | INFO     | [monitor] control thread has ended
[2025-12-03 18:22:02] 2025-12-03 17:22:02,754 | INFO     | all workflow threads have been joined
[2025-12-03 18:22:02] 2025-12-03 17:22:02,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 18:22:02] 2025-12-03 17:22:02,754 | INFO     | traces error code: 0
[2025-12-03 18:22:02] 2025-12-03 17:22:02,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 18:22:02] 2025-12-03 17:22:02,824 [wrapper] ==== pilot stdout END ====
[2025-12-03 18:22:02] 2025-12-03 17:22:02,828 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 18:22:02] 2025-12-03 17:22:02,831 [wrapper] pilotpid: 3114294
[2025-12-03 18:22:02] 2025-12-03 17:22:02,835 [wrapper] Pilot exit status: 0
[2025-12-03 18:22:02] 2025-12-03 17:22:02,845 [wrapper] pandaids: 6901172976
[2025-12-03 18:22:02] 2025-12-03 17:22:02,867 [wrapper] cleanup supervisor_pilot 3162705 3114295
[2025-12-03 18:22:02] 2025-12-03 17:22:02,870 [wrapper] Test setup, not cleaning
[2025-12-03 18:22:02] 2025-12-03 17:22:02,874 [wrapper] apfmon messages muted
[2025-12-03 18:22:02] 2025-12-03 17:22:02,877 [wrapper] ==== wrapper stdout END ====
[2025-12-03 18:22:02] 2025-12-03 17:22:02,880 [wrapper] ==== wrapper stderr END ====
[2025-12-03 18:22:02]  *** Error codes and diagnostics ***
[2025-12-03 18:22:02]     "exeErrorCode": 0,
[2025-12-03 18:22:02]     "exeErrorDiag": "",
[2025-12-03 18:22:02]     "pilotErrorCode": 0,
[2025-12-03 18:22:02]     "pilotErrorDiag": "",
[2025-12-03 18:22:02]  *** Listing of results directory ***
[2025-12-03 18:22:02] total 1062588
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 18:22:02] -rwx------ 1 boinc boinc     36292 Nov 29 10:19 runpilot2-wrapper.sh
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc      5112 Nov 29 10:20 queuedata.json
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc       100 Dec  3 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 18:22:02] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 12:35 run_atlas
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc       105 Dec  3 12:35 job.xml
[2025-12-03 18:22:02] -rw-r--r-- 2 boinc boinc 376303544 Dec  3 12:35 EVNT.47531050._000560.pool.root.1
[2025-12-03 18:22:02] -rw-r--r-- 2 boinc boinc    590122 Dec  3 12:35 input.tar.gz
[2025-12-03 18:22:02] -rw-r--r-- 2 boinc boinc     15847 Dec  3 12:35 start_atlas.sh
[2025-12-03 18:22:02] drwxrwx--x 2 boinc boinc      4096 Dec  3 12:35 shared
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc         0 Dec  3 12:35 boinc_setup_complete
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc      6371 Dec  3 12:35 init_data.xml
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc         0 Dec  3 12:35 boinc_lockfile
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc      2880 Dec  3 12:35 pandaJob.out
[2025-12-03 18:22:02] -rw------- 1 boinc boinc    985783 Dec  3 12:35 agis_schedconf.cvmfs.json
[2025-12-03 18:22:02] drwx------ 5 boinc boinc      4096 Dec  3 12:35 pilot3
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc       531 Dec  3 18:17 boinc_task_state.xml
[2025-12-03 18:22:02] -rw------- 1 boinc boinc        95 Dec  3 18:20 pilot_heartbeat.json
[2025-12-03 18:22:02] -rw------- 1 boinc boinc 699372796 Dec  3 18:20 HITS.47531058._001760.pool.root.1
[2025-12-03 18:22:02] -rw------- 1 boinc boinc      1025 Dec  3 18:20 memory_monitor_summary.json
[2025-12-03 18:22:02] -rw------- 1 boinc boinc   1516240 Dec  3 18:21 agis_ddmendpoints.agis.ALL.json
[2025-12-03 18:22:02] -rw------- 1 boinc boinc   1305261 Dec  3 18:21 log.47531058._001760.job.log.tgz.1
[2025-12-03 18:22:02] -rw------- 1 boinc boinc     28191 Dec  3 18:21 heartbeat.json
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc      8192 Dec  3 18:21 boinc_mmap_file
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc        28 Dec  3 18:21 wrapper_checkpoint.txt
[2025-12-03 18:22:02] -rw------- 1 boinc boinc      4628 Dec  3 18:22 pilotlog.txt
[2025-12-03 18:22:02] -rw------- 1 boinc boinc   2932999 Dec  3 18:22 log.47531058._001760.job.log.1
[2025-12-03 18:22:02] -rw------- 1 boinc boinc       353 Dec  3 18:22 output.list
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc       620 Dec  3 18:22 runtime_log
[2025-12-03 18:22:02] -rw------- 1 boinc boinc   4280320 Dec  3 18:22 result.tar.gz
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc      8898 Dec  3 18:22 runtime_log.err
[2025-12-03 18:22:02] -rw------- 1 boinc boinc       665 Dec  3 18:22 dwPODmyHWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJ0OKDmpPkCsm.diag
[2025-12-03 18:22:02] -rw-r--r-- 1 boinc boinc     10323 Dec  3 18:22 stderr.txt
[2025-12-03 18:22:02] HITS file was successfully produced:
[2025-12-03 18:22:02] -rw------- 1 boinc boinc 699372796 Dec  3 18:20 shared/HITS.pool.root.1
[2025-12-03 18:22:02]  *** Contents of shared directory: ***
[2025-12-03 18:22:02] total 1055252
[2025-12-03 18:22:02] -rw-r--r-- 2 boinc boinc 376303544 Dec  3 12:35 ATLAS.root_0
[2025-12-03 18:22:02] -rw-r--r-- 2 boinc boinc    590122 Dec  3 12:35 input.tar.gz
[2025-12-03 18:22:02] -rw-r--r-- 2 boinc boinc     15847 Dec  3 12:35 start_atlas.sh
[2025-12-03 18:22:02] -rw------- 1 boinc boinc 699372796 Dec  3 18:20 HITS.pool.root.1
[2025-12-03 18:22:02] -rw------- 1 boinc boinc   4280320 Dec  3 18:22 result.tar.gz
18:22:04 (3110502): run_atlas exited; CPU time 80825.627064
18:22:04 (3110502): called boinc_finish(0)

</stderr_txt>
]]>

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