Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:23:45 (27380): wrapper (7.7.26015): starting
03:23:45 (27380): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 03:23:45] Arguments: --nthreads 8
[2025-12-01 03:23:45] Threads: 8
[2025-12-01 03:23:45] Checking for CVMFS
[2025-12-01 03:23:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 03:23:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 03:23:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 03:23:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 03:23:45] 2.11.2.0 7040 124638 141932 153511 1 80 9312884 18432001 1713 130560 0 90972863 99.976 5124924 31427 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 03:23:45] CVMFS is ok
[2025-12-01 03:23:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 03:23:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 03:23:45] Further information can be found at the LHC@home message board.
[2025-12-01 03:23:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 03:23:45] Checking for apptainer binary...
[2025-12-01 03:23:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 03:23:45] Running /usr/bin/apptainer --version
[2025-12-01 03:23:45] apptainer version 1.3.2-1.el7
[2025-12-01 03:23:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 03:23:46] c-206-7.aglt2.org
[2025-12-01 03:23:46] apptainer works
[2025-12-01 03:23:46] Set ATHENA_PROC_NUMBER=8
[2025-12-01 03:23:46] Set ATHENA_CORE_NUMBER=8
[2025-12-01 03:23:46] Starting ATLAS job with PandaID=6900972810
[2025-12-01 03:23:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:12:58 (4186): wrapper (7.7.26015): starting
07:12:58 (4186): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 07:12:58] Arguments: --nthreads 8
[2025-12-01 07:12:58] Threads: 8
[2025-12-01 07:12:58] This job has been restarted, cleaning up previous attempt
[2025-12-01 07:12:58] Checking for CVMFS
[2025-12-01 07:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 07:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 07:12:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 07:12:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 07:12:59] 2.11.2.0 7040 124867 140032 153516 0 65 9339373 18432001 1 130560 0 91344806 99.976 5131715 31431 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 07:12:59] CVMFS is ok
[2025-12-01 07:12:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 07:12:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 07:12:59] Further information can be found at the LHC@home message board.
[2025-12-01 07:12:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 07:12:59] Checking for apptainer binary...
[2025-12-01 07:12:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 07:12:59] Running /usr/bin/apptainer --version
[2025-12-01 07:12:59] apptainer version 1.3.2-1.el7
[2025-12-01 07:12:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 07:13:00] c-206-7.aglt2.org
[2025-12-01 07:13:00] apptainer works
[2025-12-01 07:13:00] Set ATHENA_PROC_NUMBER=8
[2025-12-01 07:13:00] Set ATHENA_CORE_NUMBER=8
[2025-12-01 07:13:00] Starting ATLAS job with PandaID=6900972810
[2025-12-01 07:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 23:42:57]  *** The last 200 lines of the pilot log: ***
[2025-12-01 23:42:57] 2025-12-02 04:42:22,909 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 23:42:57] 2025-12-02 04:42:22,914 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2178.375
[2025-12-01 23:42:57] 2025-12-02 04:42:22,917 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6900972810/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 23:42:57] 2025-12-02 04:42:22,918 | INFO     | extracted standard info from prmon json
[2025-12-01 23:42:57] 2025-12-02 04:42:22,918 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 23:42:57] 2025-12-02 04:42:22,918 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 23:42:57] 2025-12-02 04:42:22,931 | INFO     | fitting pss+swap vs Time
[2025-12-01 23:42:57] 2025-12-02 04:42:22,933 | INFO     | sum of square deviations: 285638581969.5598
[2025-12-01 23:42:57] 2025-12-02 04:42:22,951 | INFO     | sum of deviations: 1947107495876.79
[2025-12-01 23:42:57] 2025-12-02 04:42:22,951 | INFO     | mean x: 1764620869.696814
[2025-12-01 23:42:57] 2025-12-02 04:42:22,951 | INFO     | mean y: 3382339.2230215827
[2025-12-01 23:42:57] 2025-12-02 04:42:22,952 | INFO     | intersect: -12025477694.585182
[2025-12-01 23:42:57] 2025-12-02 04:42:22,953 | INFO     | chi2: 5.269378557360358
[2025-12-01 23:42:57] 2025-12-02 04:42:22,954 | INFO     | sum of square deviations: 281257906617.12
[2025-12-01 23:42:57] 2025-12-02 04:42:22,972 | INFO     | sum of deviations: 2267367620856.4146
[2025-12-01 23:42:57] 2025-12-02 04:42:22,973 | INFO     | mean x: 1764620717.2004132
[2025-12-01 23:42:57] 2025-12-02 04:42:22,973 | INFO     | mean y: 3393475.972107438
[2025-12-01 23:42:57] 2025-12-02 04:42:22,973 | INFO     | intersect: -14222140395.754078
[2025-12-01 23:42:57] 2025-12-02 04:42:22,974 | INFO     | chi2: 2.8056682414153506
[2025-12-01 23:42:57] 2025-12-02 04:42:22,974 | INFO     | current chi2=2.8056682414153506 (change=46.75523478007961 %)
[2025-12-01 23:42:57] 2025-12-02 04:42:22,975 | INFO     | sum of square deviations: 276922196439.0616
[2025-12-01 23:42:57] 2025-12-02 04:42:22,993 | INFO     | sum of deviations: 2292575514974.2876
[2025-12-01 23:42:57] 2025-12-02 04:42:22,993 | INFO     | mean x: 1764620564.7030115
[2025-12-01 23:42:57] 2025-12-02 04:42:22,994 | INFO     | mean y: 3394357.2107995846
[2025-12-01 23:42:57] 2025-12-02 04:42:22,994 | INFO     | intersect: -14605495619.39484
[2025-12-01 23:42:57] 2025-12-02 04:42:22,995 | INFO     | chi2: 2.687359078984892
[2025-12-01 23:42:57] 2025-12-02 04:42:22,995 | INFO     | current chi2=2.687359078984892 (change=4.216790876556969 %)
[2025-12-01 23:42:57] 2025-12-02 04:42:22,995 | INFO     | right removable region: 962
[2025-12-01 23:42:57] 2025-12-02 04:42:22,996 | INFO     | sum of square deviations: 281257552146.51953
[2025-12-01 23:42:57] 2025-12-02 04:42:23,014 | INFO     | sum of deviations: 1626179676219.7705
[2025-12-01 23:42:57] 2025-12-02 04:42:23,014 | INFO     | mean x: 1764621022.1993802
[2025-12-01 23:42:57] 2025-12-02 04:42:23,015 | INFO     | mean y: 3393495.9493801654
[2025-12-01 23:42:57] 2025-12-02 04:42:23,015 | INFO     | intersect: -10199322202.279734
[2025-12-01 23:42:57] 2025-12-02 04:42:23,016 | INFO     | chi2: 2.871718131077686
[2025-12-01 23:42:57] 2025-12-02 04:42:23,016 | INFO     | current chi2=2.871718131077686 (change=45.5017683808953 %)
[2025-12-01 23:42:57] 2025-12-02 04:42:23,017 | INFO     | sum of square deviations: 276921605715.869
[2025-12-01 23:42:57] 2025-12-02 04:42:23,035 | INFO     | sum of deviations: 1539536484984.9185
[2025-12-01 23:42:57] 2025-12-02 04:42:23,035 | INFO     | mean x: 1764621174.7009346
[2025-12-01 23:42:57] 2025-12-02 04:42:23,035 | INFO     | mean y: 3396542.7601246107
[2025-12-01 23:42:57] 2025-12-02 04:42:23,035 | INFO     | intersect: -9806956367.790524
[2025-12-01 23:42:57] 2025-12-02 04:42:23,036 | INFO     | chi2: 2.7932242446368236
[2025-12-01 23:42:57] 2025-12-02 04:42:23,036 | INFO     | current chi2=2.7932242446368236 (change=2.7333423009522724 %)
[2025-12-01 23:42:57] 2025-12-02 04:42:23,036 | INFO     | left removable region: 20
[2025-12-01 23:42:57] 2025-12-02 04:42:23,037 | INFO     | sum of square deviations: 259197631604.96088
[2025-12-01 23:42:57] 2025-12-02 04:42:23,055 | INFO     | sum of deviations: 1761851058068.0635
[2025-12-01 23:42:57] 2025-12-02 04:42:23,055 | INFO     | mean x: 1764621144.2112527
[2025-12-01 23:42:57] 2025-12-02 04:42:23,055 | INFO     | mean y: 3413042.5222929935
[2025-12-01 23:42:57] 2025-12-02 04:42:23,055 | INFO     | intersect: -11991293895.06366
[2025-12-01 23:42:57] 2025-12-02 04:42:23,056 | INFO     | chi2: 0.1495879689754503
[2025-12-01 23:42:57] 2025-12-02 04:42:23,056 | INFO     | current memory leak: 6.80 B/s (using 942 data points, chi2=0.15)
[2025-12-01 23:42:57] 2025-12-02 04:42:23,057 | INFO     | could have reported an average CPU frequency of 2566 MHz (36 samples)
[2025-12-01 23:42:57] 2025-12-02 04:42:23,057 | INFO     | ..............................
[2025-12-01 23:42:57] 2025-12-02 04:42:23,057 | INFO     | . Timing measurements:
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | . get job = 0 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | . initial setup = 2 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | . payload setup = 10 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | . stage-in = 0 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | . payload execution = 59311 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | . stage-out = 3 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | . log creation = 0 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,058 | INFO     | ..............................
[2025-12-01 23:42:57] 2025-12-02 04:42:23,247 | INFO     | 
[2025-12-01 23:42:57] 2025-12-02 04:42:23,247 | INFO     | job summary report
[2025-12-01 23:42:57] 2025-12-02 04:42:23,247 | INFO     | --------------------------------------------------
[2025-12-01 23:42:57] 2025-12-02 04:42:23,247 | INFO     | PanDA job id: 6900972810
[2025-12-01 23:42:57] 2025-12-02 04:42:23,247 | INFO     | task id: 47531058
[2025-12-01 23:42:57] 2025-12-02 04:42:23,247 | INFO     | errors: (none)
[2025-12-01 23:42:57] 2025-12-02 04:42:23,248 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 23:42:57] 2025-12-02 04:42:23,248 | INFO     | pilot state: finished 
[2025-12-01 23:42:57] 2025-12-02 04:42:23,248 | INFO     | transexitcode: 0
[2025-12-01 23:42:57] 2025-12-02 04:42:23,248 | INFO     | exeerrorcode: 0
[2025-12-01 23:42:57] 2025-12-02 04:42:23,248 | INFO     | exeerrordiag: 
[2025-12-01 23:42:57] 2025-12-02 04:42:23,248 | INFO     | exitcode: 0
[2025-12-01 23:42:57] 2025-12-02 04:42:23,248 | INFO     | exitmsg: OK
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | cpuconsumptiontime: 455956 s
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | nevents: 1000
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | neventsw: 0
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | pid: 4475
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | pgrp: 4475
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | corecount: 8
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | event service: False
[2025-12-01 23:42:57] 2025-12-02 04:42:23,249 | INFO     | sizes: {0: 2284454, 4: 2284716, 11: 2284744, 59325: 2356026, 59329: 2365076, 59334: 2365266}
[2025-12-01 23:42:57] 2025-12-02 04:42:23,250 | INFO     | --------------------------------------------------
[2025-12-01 23:42:57] 2025-12-02 04:42:23,250 | INFO     | 
[2025-12-01 23:42:57] 2025-12-02 04:42:23,250 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-01 23:42:57] 2025-12-02 04:42:23,268 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,268 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,269 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,269 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,270 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,270 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,270 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,270 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,270 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,271 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,271 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,271 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,271 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,271 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 23:42:57] 2025-12-02 04:42:23,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,272 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 23:42:57] 2025-12-02 04:42:23,272 | INFO     | job 6900972810 has completed (purged errors)
[2025-12-01 23:42:57] 2025-12-02 04:42:23,272 | INFO     | overall cleanup function is called
[2025-12-01 23:42:57] 2025-12-02 04:42:23,680 | INFO     | PID=15350 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 23:42:57] 2025-12-02 04:42:23,680 | INFO     | .. there are 3 such processes running
[2025-12-01 23:42:57] 2025-12-02 04:42:24,290 | INFO     | --- collectZombieJob: --- 10, [4475]
[2025-12-01 23:42:57] 2025-12-02 04:42:24,290 | INFO     | zombie collector waiting for pid 4475
[2025-12-01 23:42:57] 2025-12-02 04:42:24,290 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 23:42:57] 2025-12-02 04:42:24,290 | INFO     | collected zombie processes
[2025-12-01 23:42:57] 2025-12-02 04:42:24,290 | INFO     | will attempt to kill all subprocesses of pid=4475
[2025-12-01 23:42:57] 2025-12-02 04:42:24,407 | INFO     | process IDs to be killed: [4475] (in reverse order)
[2025-12-01 23:42:57] 2025-12-02 04:42:24,452 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 23:42:57] 2025-12-02 04:42:24,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 23:42:57] 2025-12-02 04:42:24,455 | INFO     | did not find any defunct processes belonging to 4475
[2025-12-01 23:42:57] 2025-12-02 04:42:24,458 | INFO     | did not find any defunct processes belonging to 4475
[2025-12-01 23:42:57] 2025-12-02 04:42:24,459 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 23:42:57] 2025-12-02 04:42:24,460 | INFO     | ready for new job
[2025-12-01 23:42:57] 2025-12-02 04:42:24,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 23:42:57] 2025-12-02 04:42:24,463 | INFO     | ***************************************
[2025-12-01 23:42:57] 2025-12-02 04:42:24,463 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 23:42:57] 2025-12-02 04:42:24,463 | INFO     | ***************************************
[2025-12-01 23:42:57] 2025-12-02 04:42:24,463 | INFO     | 
[2025-12-01 23:42:57] 2025-12-02 04:42:24,464 | INFO     | architecture information:
[2025-12-01 23:42:57] 2025-12-02 04:42:24,465 | INFO     | executing command: cat /etc/os-release
[2025-12-01 23:42:57] 2025-12-02 04:42:24,478 | INFO     | cat /etc/os-release:
[2025-12-01 23:42:57] NAME="CentOS Linux"
[2025-12-01 23:42:57] VERSION="7 (Core)"
[2025-12-01 23:42:57] ID="centos"
[2025-12-01 23:42:57] ID_LIKE="rhel fedora"
[2025-12-01 23:42:57] VERSION_ID="7"
[2025-12-01 23:42:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 23:42:57] ANSI_COLOR="0;31"
[2025-12-01 23:42:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 23:42:57] HOME_URL="https://www.centos.org/"
[2025-12-01 23:42:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 23:42:57] 
[2025-12-01 23:42:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 23:42:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 23:42:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 23:42:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 23:42:57] 
[2025-12-01 23:42:57] 2025-12-02 04:42:24,478 | INFO     | ***************************************
[2025-12-01 23:42:57] 2025-12-02 04:42:24,981 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-01 23:42:57] 2025-12-02 04:42:24,993 | INFO     | sufficient remaining disk space (25653411840 B)
[2025-12-01 23:42:57] 2025-12-02 04:42:24,994 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 23:42:57] 2025-12-02 04:42:24,994 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 23:42:57] 2025-12-02 04:42:24,994 | INFO     | update_server=False
[2025-12-01 23:42:57] 2025-12-02 04:42:24,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 23:42:57] 2025-12-02 04:42:24,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 23:42:57] 2025-12-02 04:42:24,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 23:42:57] 2025-12-02 04:42:24,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 23:42:57] 2025-12-02 04:42:24,995 | INFO     | aborting loop
[2025-12-01 23:42:57] 2025-12-02 04:42:25,182 | INFO     | all job control threads have been joined
[2025-12-01 23:42:57] 2025-12-02 04:42:25,187 | INFO     | all data control threads have been joined
[2025-12-01 23:42:57] 2025-12-02 04:42:25,810 | INFO     | all payload control threads have been joined
[2025-12-01 23:42:57] 2025-12-02 04:42:25,999 | INFO     | [job] retrieve thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,000 | INFO     | [job] queue monitor thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,000 | INFO     | [job] job monitor thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,160 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,184 | INFO     | [job] control thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,192 | INFO     | [data] control thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 23:42:57] 2025-12-02 04:42:26,265 | INFO     | [payload] validate_post thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,598 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,774 | INFO     | [job] validate thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,816 | INFO     | [payload] control thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,892 | INFO     | [data] copytool_in thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,899 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:26,960 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:27,277 | INFO     | [payload] failed_post thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:28,264 | INFO     | [data] copytool_out thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:28,997 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 23:42:57] 2025-12-02 04:42:51,366 | INFO     | [monitor] cgroup control has ended
[2025-12-01 23:42:57] 2025-12-02 04:42:52,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140103069488960)>', '<ExcThread(monitor, started 140102328100608)>']
[2025-12-01 23:42:57] 2025-12-02 04:42:54,760 | INFO     | 59353s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-01 23:42:57] 2025-12-02 04:42:55,896 | INFO     | PID=15350 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 23:42:57] 2025-12-02 04:42:55,896 | INFO     | .. there are 3 such processes running
[2025-12-01 23:42:57] 2025-12-02 04:42:55,896 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 23:42:57] 2025-12-02 04:42:55,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 23:42:57] 2025-12-02 04:42:55,897 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 23:42:57] 2025-12-02 04:42:55,897 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 23:42:57] 2025-12-02 04:42:55,897 | INFO     | [monitor] control thread has ended
[2025-12-01 23:42:57] 2025-12-02 04:42:57,110 | INFO     | all workflow threads have been joined
[2025-12-01 23:42:57] 2025-12-02 04:42:57,110 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 23:42:57] 2025-12-02 04:42:57,110 | INFO     | traces error code: 0
[2025-12-01 23:42:57] 2025-12-02 04:42:57,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 23:42:57] 2025-12-02 04:42:57,203 [wrapper] ==== pilot stdout END ====
[2025-12-01 23:42:57] 2025-12-02 04:42:57,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 23:42:57] 2025-12-02 04:42:57,208 [wrapper] pilotpid: 15350
[2025-12-01 23:42:57] 2025-12-02 04:42:57,211 [wrapper] Pilot exit status: 0
[2025-12-01 23:42:57] 2025-12-02 04:42:57,218 [wrapper] pandaids: 6900972810 6900972810
[2025-12-01 23:42:57] 2025-12-02 04:42:57,247 [wrapper] cleanup supervisor_pilot 27758 15352
[2025-12-01 23:42:57] 2025-12-02 04:42:57,250 [wrapper] Test setup, not cleaning
[2025-12-01 23:42:57] 2025-12-02 04:42:57,252 [wrapper] apfmon messages muted
[2025-12-01 23:42:57] 2025-12-02 04:42:57,255 [wrapper] ==== wrapper stdout END ====
[2025-12-01 23:42:57] 2025-12-02 04:42:57,257 [wrapper] ==== wrapper stderr END ====
[2025-12-01 23:42:57]  *** Error codes and diagnostics ***
[2025-12-01 23:42:57]     "exeErrorCode": 0,
[2025-12-01 23:42:57]     "exeErrorDiag": "",
[2025-12-01 23:42:57]     "pilotErrorCode": 0,
[2025-12-01 23:42:57]     "pilotErrorDiag": "",
[2025-12-01 23:42:57]  *** Listing of results directory ***
[2025-12-01 23:42:57] total 1440420
[2025-12-01 23:42:57] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:19 queuedata.json
[2025-12-01 23:42:57] -rwx------ 1 boincer umatlas     36292 Nov 29 04:19 runpilot2-wrapper.sh
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas       100 Dec  1 03:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 23:42:57] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 03:23 run_atlas
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas       105 Dec  1 03:23 job.xml
[2025-12-01 23:42:57] -rw-r--r-- 3 boincer umatlas 378519762 Dec  1 03:23 EVNT.47531050._000518.pool.root.1
[2025-12-01 23:42:57] -rw-r--r-- 3 boincer umatlas 378519762 Dec  1 03:23 ATLAS.root_0
[2025-12-01 23:42:57] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 03:23 start_atlas.sh
[2025-12-01 23:42:57] drwxrwx--x 2 boincer umatlas      4096 Dec  1 03:23 shared
[2025-12-01 23:42:57] -rw-r--r-- 2 boincer umatlas    590122 Dec  1 03:23 input.tar.gz
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas         0 Dec  1 03:23 boinc_lockfile
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas      2881 Dec  1 07:13 pandaJob.out
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas        57 Dec  1 07:13 setup.sh.local
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas    992117 Dec  1 07:13 agis_schedconf.cvmfs.json
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas       533 Dec  1 23:34 boinc_task_state.xml
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas      5952 Dec  1 23:39 init_data.xml
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas 692997088 Dec  1 23:41 HITS.47531058._001340.pool.root.1
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas      1062 Dec  1 23:42 memory_monitor_summary.json
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas   1516240 Dec  1 23:42 agis_ddmendpoints.agis.ALL.json
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas   2266231 Dec  1 23:42 log.47531058._001340.job.log.tgz.1
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas        96 Dec  1 23:42 pilot_heartbeat.json
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas     28171 Dec  1 23:42 heartbeat.json
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 23:42 boinc_mmap_file
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas        29 Dec  1 23:42 wrapper_checkpoint.txt
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas      4937 Dec  1 23:42 pilotlog.txt
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas   8226318 Dec  1 23:42 log.47531058._001340.job.log.1
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas       353 Dec  1 23:42 output.list
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas       620 Dec  1 23:42 runtime_log
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas  10536960 Dec  1 23:42 result.tar.gz
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas      9423 Dec  1 23:42 runtime_log.err
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas       792 Dec  1 23:42 mnKNDmmHWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlgLKDmlQRyXo.diag
[2025-12-01 23:42:57] -rw-r--r-- 1 boincer umatlas     23488 Dec  1 23:42 stderr.txt
[2025-12-01 23:42:57] HITS file was successfully produced:
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas 692997088 Dec  1 23:41 shared/HITS.pool.root.1
[2025-12-01 23:42:57]  *** Contents of shared directory: ***
[2025-12-01 23:42:57] total 1057300
[2025-12-01 23:42:57] -rw-r--r-- 3 boincer umatlas 378519762 Dec  1 03:23 ATLAS.root_0
[2025-12-01 23:42:57] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 03:23 start_atlas.sh
[2025-12-01 23:42:57] -rw-r--r-- 2 boincer umatlas    590122 Dec  1 03:23 input.tar.gz
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas 692997088 Dec  1 23:41 HITS.pool.root.1
[2025-12-01 23:42:57] -rw------- 1 boincer umatlas  10536960 Dec  1 23:42 result.tar.gz
23:42:58 (4186): run_atlas exited; CPU time 454437.791061
23:42:58 (4186): called boinc_finish(0)

</stderr_txt>
]]>

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