Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:41:20 (26528): wrapper (7.7.26015): starting
03:41:20 (26528): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 03:41:20] Arguments: --nthreads 8
[2025-12-01 03:41:20] Threads: 8
[2025-12-01 03:41:20] Checking for CVMFS
[2025-12-01 03:41:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 03:41:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 03:41:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 03:41:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 03:41:20] 2.11.2.0 7040 124656 140956 153511 0 88 9313949 18432001 1858 130560 0 91059591 99.976 5125006 31427 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 03:41:20] CVMFS is ok
[2025-12-01 03:41:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 03:41:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 03:41:20] Further information can be found at the LHC@home message board.
[2025-12-01 03:41:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 03:41:20] Checking for apptainer binary...
[2025-12-01 03:41:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 03:41:20] Running /usr/bin/apptainer --version
[2025-12-01 03:41:21] apptainer version 1.3.2-1.el7
[2025-12-01 03:41:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 03:41:21] c-206-7.aglt2.org
[2025-12-01 03:41:21] apptainer works
[2025-12-01 03:41:21] Set ATHENA_PROC_NUMBER=8
[2025-12-01 03:41:21] Set ATHENA_CORE_NUMBER=8
[2025-12-01 03:41:21] Starting ATLAS job with PandaID=6896912354
[2025-12-01 03:41:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:12:58 (4187): wrapper (7.7.26015): starting
07:12:58 (4187): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 07:12:58] Arguments: --nthreads 8
[2025-12-01 07:12:58] Threads: 8
[2025-12-01 07:12:58] This job has been restarted, cleaning up previous attempt
[2025-12-01 07:12:58] Checking for CVMFS
[2025-12-01 07:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 07:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 07:12:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 07:12:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 07:12:59] 2.11.2.0 7040 124867 140032 153516 0 65 9339373 18432001 1 130560 0 91344806 99.976 5131715 31431 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 07:12:59] CVMFS is ok
[2025-12-01 07:12:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 07:12:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 07:12:59] Further information can be found at the LHC@home message board.
[2025-12-01 07:12:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 07:12:59] Checking for apptainer binary...
[2025-12-01 07:12:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 07:12:59] Running /usr/bin/apptainer --version
[2025-12-01 07:12:59] apptainer version 1.3.2-1.el7
[2025-12-01 07:12:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 07:13:00] c-206-7.aglt2.org
[2025-12-01 07:13:00] apptainer works
[2025-12-01 07:13:00] Set ATHENA_PROC_NUMBER=8
[2025-12-01 07:13:00] Set ATHENA_CORE_NUMBER=8
[2025-12-01 07:13:00] Starting ATLAS job with PandaID=6896912354
[2025-12-01 07:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 00:02:58]  *** The last 200 lines of the pilot log: ***
[2025-12-02 00:02:58] 2025-12-02 05:02:18,609 | INFO     | time since job start (60545s) is within the limit (172800.0s)
[2025-12-02 00:02:58] 2025-12-02 05:02:19,216 | INFO     | monitor loop #4340: job 0:6896912354 is in state 'finished'
[2025-12-02 00:02:58] 2025-12-02 05:02:19,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:02:58] 2025-12-02 05:02:19,950 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 00:02:58] 2025-12-02 05:02:19,956 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2450.2083333333335
[2025-12-02 00:02:58] 2025-12-02 05:02:19,960 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896912354/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 00:02:58] 2025-12-02 05:02:19,961 | INFO     | extracted standard info from prmon json
[2025-12-02 00:02:58] 2025-12-02 05:02:19,961 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 00:02:58] 2025-12-02 05:02:19,962 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 00:02:58] 2025-12-02 05:02:19,987 | INFO     | fitting pss+swap vs Time
[2025-12-02 00:02:58] 2025-12-02 05:02:19,989 | INFO     | sum of square deviations: 302701169143.09265
[2025-12-02 00:02:58] 2025-12-02 05:02:20,022 | INFO     | sum of deviations: 1952403520302.2053
[2025-12-02 00:02:58] 2025-12-02 05:02:20,022 | INFO     | mean x: 1764621449.969758
[2025-12-02 00:02:58] 2025-12-02 05:02:20,022 | INFO     | mean y: 3374380.040322581
[2025-12-02 00:02:58] 2025-12-02 05:02:20,022 | INFO     | intersect: -11378323089.69459
[2025-12-02 00:02:58] 2025-12-02 05:02:20,024 | INFO     | chi2: 6.140015149000628
[2025-12-02 00:02:58] 2025-12-02 05:02:20,025 | INFO     | sum of square deviations: 298147216581.98376
[2025-12-02 00:02:58] 2025-12-02 05:02:20,057 | INFO     | sum of deviations: 2329938400934.862
[2025-12-02 00:02:58] 2025-12-02 05:02:20,057 | INFO     | mean x: 1764621297.4721377
[2025-12-02 00:02:58] 2025-12-02 05:02:20,057 | INFO     | mean y: 3387017.667679838
[2025-12-02 00:02:58] 2025-12-02 05:02:20,058 | INFO     | intersect: -13786642522.847164
[2025-12-02 00:02:58] 2025-12-02 05:02:20,059 | INFO     | chi2: 3.102659999854262
[2025-12-02 00:02:58] 2025-12-02 05:02:20,059 | INFO     | current chi2=3.102659999854262 (change=49.46820285355057 %)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,061 | INFO     | sum of square deviations: 293639171858.36304
[2025-12-02 00:02:58] 2025-12-02 05:02:20,093 | INFO     | sum of deviations: 2425790779929.11
[2025-12-02 00:02:58] 2025-12-02 05:02:20,093 | INFO     | mean x: 1764621144.9745417
[2025-12-02 00:02:58] 2025-12-02 05:02:20,093 | INFO     | mean y: 3390253.2443991853
[2025-12-02 00:02:58] 2025-12-02 05:02:20,093 | INFO     | intersect: -14574370869.212185
[2025-12-02 00:02:58] 2025-12-02 05:02:20,095 | INFO     | chi2: 2.724608064807435
[2025-12-02 00:02:58] 2025-12-02 05:02:20,095 | INFO     | current chi2=2.724608064807435 (change=12.184768394364355 %)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,095 | INFO     | right removable region: 981
[2025-12-02 00:02:58] 2025-12-02 05:02:20,097 | INFO     | sum of square deviations: 298146932321.98376
[2025-12-02 00:02:58] 2025-12-02 05:02:20,129 | INFO     | sum of deviations: 1626224027363.042
[2025-12-02 00:02:58] 2025-12-02 05:02:20,129 | INFO     | mean x: 1764621602.4721377
[2025-12-02 00:02:58] 2025-12-02 05:02:20,129 | INFO     | mean y: 3385288.474164134
[2025-12-02 00:02:58] 2025-12-02 05:02:20,129 | INFO     | intersect: -9621634250.700447
[2025-12-02 00:02:58] 2025-12-02 05:02:20,131 | INFO     | chi2: 3.7604992965062496
[2025-12-02 00:02:58] 2025-12-02 05:02:20,131 | INFO     | current chi2=3.7604992965062496 (change=38.75423422826045 %)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,132 | INFO     | sum of square deviations: 293638663301.3118
[2025-12-02 00:02:58] 2025-12-02 05:02:20,165 | INFO     | sum of deviations: 1537344471037.46
[2025-12-02 00:02:58] 2025-12-02 05:02:20,165 | INFO     | mean x: 1764621754.9735234
[2025-12-02 00:02:58] 2025-12-02 05:02:20,166 | INFO     | mean y: 3388294.4022403257
[2025-12-02 00:02:58] 2025-12-02 05:02:20,166 | INFO     | intersect: -9235284392.570333
[2025-12-02 00:02:58] 2025-12-02 05:02:20,167 | INFO     | chi2: 3.679720990466785
[2025-12-02 00:02:58] 2025-12-02 05:02:20,167 | INFO     | current chi2=3.679720990466785 (change=2.1480739569480254 %)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,168 | INFO     | left removable region: 20
[2025-12-02 00:02:58] 2025-12-02 05:02:20,169 | INFO     | sum of square deviations: 275200608187.8546
[2025-12-02 00:02:58] 2025-12-02 05:02:20,200 | INFO     | sum of deviations: 1877778587846.1057
[2025-12-02 00:02:58] 2025-12-02 05:02:20,201 | INFO     | mean x: 1764621724.4797087
[2025-12-02 00:02:58] 2025-12-02 05:02:20,201 | INFO     | mean y: 3408829.672216441
[2025-12-02 00:02:58] 2025-12-02 05:02:20,201 | INFO     | intersect: -12037149189.786058
[2025-12-02 00:02:58] 2025-12-02 05:02:20,202 | INFO     | chi2: 0.19313222923151802
[2025-12-02 00:02:58] 2025-12-02 05:02:20,203 | INFO     | current memory leak: 6.82 B/s (using 961 data points, chi2=0.19)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,204 | INFO     | could have reported an average CPU frequency of 2572 MHz (36 samples)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,204 | INFO     | ..............................
[2025-12-02 00:02:58] 2025-12-02 05:02:20,204 | INFO     | . Timing measurements:
[2025-12-02 00:02:58] 2025-12-02 05:02:20,204 | INFO     | . get job = 0 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,204 | INFO     | . initial setup = 2 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,205 | INFO     | . payload setup = 10 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,205 | INFO     | . stage-in = 0 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,205 | INFO     | . payload execution = 60506 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,205 | INFO     | . stage-out = 3 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,205 | INFO     | . log creation = 0 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,205 | INFO     | ..............................
[2025-12-02 00:02:58] 2025-12-02 05:02:20,360 | INFO     | 
[2025-12-02 00:02:58] 2025-12-02 05:02:20,360 | INFO     | job summary report
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | --------------------------------------------------
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | PanDA job id: 6896912354
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | task id: 47538121
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | errors: (none)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | pilot state: finished 
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | transexitcode: 0
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | exeerrorcode: 0
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | exeerrordiag: 
[2025-12-02 00:02:58] 2025-12-02 05:02:20,361 | INFO     | exitcode: 0
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | exitmsg: OK
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | cpuconsumptiontime: 469953 s
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | nevents: 1000
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | neventsw: 0
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | pid: 4373
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | pgrp: 4373
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | corecount: 8
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | event service: False
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | sizes: {0: 2284450, 4: 2284712, 11: 2284740, 60520: 2356080, 60521: 2356079, 60526: 2365313, 60531: 2365503}
[2025-12-02 00:02:58] 2025-12-02 05:02:20,362 | INFO     | --------------------------------------------------
[2025-12-02 00:02:58] 2025-12-02 05:02:20,363 | INFO     | 
[2025-12-02 00:02:58] 2025-12-02 05:02:20,363 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-02 00:02:58] 2025-12-02 05:02:20,379 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,379 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,379 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,379 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,379 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | job 6896912354 has completed (purged errors)
[2025-12-02 00:02:58] 2025-12-02 05:02:20,381 | INFO     | overall cleanup function is called
[2025-12-02 00:02:58] 2025-12-02 05:02:21,395 | INFO     | --- collectZombieJob: --- 10, [4373]
[2025-12-02 00:02:58] 2025-12-02 05:02:21,395 | INFO     | zombie collector waiting for pid 4373
[2025-12-02 00:02:58] 2025-12-02 05:02:21,395 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 00:02:58] 2025-12-02 05:02:21,395 | INFO     | collected zombie processes
[2025-12-02 00:02:58] 2025-12-02 05:02:21,395 | INFO     | will attempt to kill all subprocesses of pid=4373
[2025-12-02 00:02:58] 2025-12-02 05:02:21,567 | INFO     | process IDs to be killed: [4373] (in reverse order)
[2025-12-02 00:02:58] 2025-12-02 05:02:21,617 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 00:02:58] 2025-12-02 05:02:21,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 00:02:58] 2025-12-02 05:02:21,622 | INFO     | did not find any defunct processes belonging to 4373
[2025-12-02 00:02:58] 2025-12-02 05:02:21,627 | INFO     | did not find any defunct processes belonging to 4373
[2025-12-02 00:02:58] 2025-12-02 05:02:21,629 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 00:02:58] 2025-12-02 05:02:21,629 | INFO     | ready for new job
[2025-12-02 00:02:58] 2025-12-02 05:02:21,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 00:02:58] 2025-12-02 05:02:21,634 | INFO     | ***************************************
[2025-12-02 00:02:58] 2025-12-02 05:02:21,634 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 00:02:58] 2025-12-02 05:02:21,634 | INFO     | ***************************************
[2025-12-02 00:02:58] 2025-12-02 05:02:21,634 | INFO     | 
[2025-12-02 00:02:58] 2025-12-02 05:02:21,635 | INFO     | architecture information:
[2025-12-02 00:02:58] 2025-12-02 05:02:21,636 | INFO     | executing command: cat /etc/os-release
[2025-12-02 00:02:58] 2025-12-02 05:02:21,654 | INFO     | cat /etc/os-release:
[2025-12-02 00:02:58] NAME="CentOS Linux"
[2025-12-02 00:02:58] VERSION="7 (Core)"
[2025-12-02 00:02:58] ID="centos"
[2025-12-02 00:02:58] ID_LIKE="rhel fedora"
[2025-12-02 00:02:58] VERSION_ID="7"
[2025-12-02 00:02:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 00:02:58] ANSI_COLOR="0;31"
[2025-12-02 00:02:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 00:02:58] HOME_URL="https://www.centos.org/"
[2025-12-02 00:02:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 00:02:58] 
[2025-12-02 00:02:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 00:02:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 00:02:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 00:02:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 00:02:58] 
[2025-12-02 00:02:58] 2025-12-02 05:02:21,655 | INFO     | ***************************************
[2025-12-02 00:02:58] 2025-12-02 05:02:22,158 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-02 00:02:58] 2025-12-02 05:02:22,178 | INFO     | sufficient remaining disk space (27058503680 B)
[2025-12-02 00:02:58] 2025-12-02 05:02:22,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 00:02:58] 2025-12-02 05:02:22,178 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 00:02:58] 2025-12-02 05:02:22,178 | INFO     | update_server=False
[2025-12-02 00:02:58] 2025-12-02 05:02:22,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 00:02:58] 2025-12-02 05:02:22,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 00:02:58] 2025-12-02 05:02:22,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:02:58] 2025-12-02 05:02:22,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 00:02:58] 2025-12-02 05:02:22,658 | INFO     | all data control threads have been joined
[2025-12-02 00:02:58] 2025-12-02 05:02:22,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:02:58] 2025-12-02 05:02:22,726 | INFO     | aborting loop
[2025-12-02 00:02:58] 2025-12-02 05:02:23,184 | INFO     | [job] retrieve thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,185 | INFO     | [job] queue monitor thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,338 | INFO     | all payload control threads have been joined
[2025-12-02 00:02:58] 2025-12-02 05:02:23,371 | INFO     | [payload] validate_post thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,381 | INFO     | [data] copytool_in thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,397 | INFO     | [payload] failed_post thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,463 | INFO     | all job control threads have been joined
[2025-12-02 00:02:58] 2025-12-02 05:02:23,600 | INFO     | [job] validate thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,600 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,616 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,663 | INFO     | [data] control thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,731 | INFO     | [job] job monitor thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:23,913 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:24,344 | INFO     | [payload] control thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:24,469 | INFO     | [job] control thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:24,587 | INFO     | [data] copytool_out thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:26,185 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 00:02:58] 2025-12-02 05:02:51,827 | INFO     | PID=15349 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 00:02:58] 2025-12-02 05:02:51,827 | INFO     | .. there are 3 such processes running
[2025-12-02 00:02:58] 2025-12-02 05:02:51,828 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 00:02:58] 2025-12-02 05:02:51,828 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 00:02:58] 2025-12-02 05:02:51,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 00:02:58] 2025-12-02 05:02:53,344 | INFO     | [monitor] cgroup control has ended
[2025-12-02 00:02:58] 2025-12-02 05:02:53,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757290334016)>', '<ExcThread(monitor, started 139756524517120)>']
[2025-12-02 00:02:58] 2025-12-02 05:02:53,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 00:02:58] 2025-12-02 05:02:53,838 | INFO     | [monitor] control thread has ended
[2025-12-02 00:02:58] 2025-12-02 05:02:58,630 | INFO     | all workflow threads have been joined
[2025-12-02 00:02:58] 2025-12-02 05:02:58,630 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 00:02:58] 2025-12-02 05:02:58,630 | INFO     | traces error code: 0
[2025-12-02 00:02:58] 2025-12-02 05:02:58,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 00:02:58] 2025-12-02 05:02:58,753 [wrapper] ==== pilot stdout END ====
[2025-12-02 00:02:58] 2025-12-02 05:02:58,756 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 00:02:58] 2025-12-02 05:02:58,758 [wrapper] pilotpid: 15349
[2025-12-02 00:02:58] 2025-12-02 05:02:58,760 [wrapper] Pilot exit status: 0
[2025-12-02 00:02:58] 2025-12-02 05:02:58,769 [wrapper] pandaids: 6896912354 6896912354
[2025-12-02 00:02:58] 2025-12-02 05:02:58,809 [wrapper] cleanup supervisor_pilot   807 15351
[2025-12-02 00:02:58] 2025-12-02 05:02:58,811 [wrapper] Test setup, not cleaning
[2025-12-02 00:02:58] 2025-12-02 05:02:58,813 [wrapper] apfmon messages muted
[2025-12-02 00:02:58] 2025-12-02 05:02:58,816 [wrapper] ==== wrapper stdout END ====
[2025-12-02 00:02:58] 2025-12-02 05:02:58,818 [wrapper] ==== wrapper stderr END ====
[2025-12-02 00:02:58]  *** Error codes and diagnostics ***
[2025-12-02 00:02:58]     "exeErrorCode": 0,
[2025-12-02 00:02:58]     "exeErrorDiag": "",
[2025-12-02 00:02:58]     "pilotErrorCode": 0,
[2025-12-02 00:02:58]     "pilotErrorDiag": "",
[2025-12-02 00:02:58]  *** Listing of results directory ***
[2025-12-02 00:02:58] total 1460884
[2025-12-02 00:02:58] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-02 00:02:58] -rwx------ 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 05:32 queuedata.json
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas       100 Dec  1 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 00:02:58] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 03:41 run_atlas
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas       105 Dec  1 03:41 job.xml
[2025-12-02 00:02:58] -rw-r--r-- 3 boincer umatlas 378709772 Dec  1 03:41 EVNT.47528880._000014.pool.root.1
[2025-12-02 00:02:58] -rw-r--r-- 3 boincer umatlas 378709772 Dec  1 03:41 ATLAS.root_0
[2025-12-02 00:02:58] -rw-r--r-- 2 boincer umatlas    590122 Dec  1 03:41 input.tar.gz
[2025-12-02 00:02:58] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 03:41 start_atlas.sh
[2025-12-02 00:02:58] drwxrwx--x 2 boincer umatlas      4096 Dec  1 03:41 shared
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas         0 Dec  1 03:41 boinc_lockfile
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas      2879 Dec  1 07:13 pandaJob.out
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas        57 Dec  1 07:13 setup.sh.local
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas    992117 Dec  1 07:13 agis_schedconf.cvmfs.json
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas       533 Dec  1 23:52 boinc_task_state.xml
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas      5952 Dec  2 00:01 init_data.xml
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas 713230122 Dec  2 00:01 HITS.47538121._000134.pool.root.1
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas      1066 Dec  2 00:02 memory_monitor_summary.json
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas   1516240 Dec  2 00:02 agis_ddmendpoints.agis.ALL.json
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas   2277543 Dec  2 00:02 log.47538121._000134.job.log.tgz.1
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas     27818 Dec  2 00:02 heartbeat.json
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 00:02 boinc_mmap_file
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas        29 Dec  2 00:02 wrapper_checkpoint.txt
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas        96 Dec  2 00:02 pilot_heartbeat.json
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas      4821 Dec  2 00:02 pilotlog.txt
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas   8388322 Dec  2 00:02 log.47538121._000134.job.log.1
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas       353 Dec  2 00:02 output.list
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas       620 Dec  2 00:02 runtime_log
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas  10700800 Dec  2 00:02 result.tar.gz
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas      9423 Dec  2 00:02 runtime_log.err
[2025-12-02 00:02:58] -rw------- 1 boincer umatlas       792 Dec  2 00:02 7SgMDmttAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQWOKDmxf86Ro.diag
[2025-12-02 00:02:58] -rw-r--r-- 1 boincer umatlas     23434 Dec  2 00:02 stderr.txt
[2025-12-02 00:02:58] HITS file was successfully produced:
[2025-12-02 00:02:59] -rw------- 1 boincer umatlas 713230122 Dec  2 00:01 shared/HITS.pool.root.1
[2025-12-02 00:02:59]  *** Contents of shared directory: ***
[2025-12-02 00:02:59] total 1077408
[2025-12-02 00:02:59] -rw-r--r-- 3 boincer umatlas 378709772 Dec  1 03:41 ATLAS.root_0
[2025-12-02 00:02:59] -rw-r--r-- 2 boincer umatlas    590122 Dec  1 03:41 input.tar.gz
[2025-12-02 00:02:59] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 03:41 start_atlas.sh
[2025-12-02 00:02:59] -rw------- 1 boincer umatlas 713230122 Dec  2 00:01 HITS.pool.root.1
[2025-12-02 00:02:59] -rw------- 1 boincer umatlas  10700800 Dec  2 00:02 result.tar.gz
00:03:00 (4187): run_atlas exited; CPU time 468770.009650
00:03:00 (4187): called boinc_finish(0)

</stderr_txt>
]]>

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