Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:41:07 (368058): wrapper (7.7.26015): starting
10:41:07 (368058): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 10:41:07] Arguments: --nthreads 12
[2025-12-02 10:41:07] Threads: 12
[2025-12-02 10:41:07] Checking for CVMFS
[2025-12-02 10:41:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 10:41:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 10:41:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 10:41:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 10:41:07] 2.13.3.0 4869 815 50044 153560 3 68 6545704 10240000 582 130560 0 3375128 99.995 145420 1378 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 10:41:07] CVMFS is ok
[2025-12-02 10:41:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 10:41:07] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 10:41:07] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 10:41:07] Further information can be found at the LHC@home message board.
[2025-12-02 10:41:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 10:41:07] Checking for apptainer binary...
[2025-12-02 10:41:07] apptainer is not installed, using version from CVMFS
[2025-12-02 10:41:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 10:41:08] pots
[2025-12-02 10:41:08] apptainer works
[2025-12-02 10:41:08] Set ATHENA_PROC_NUMBER=12
[2025-12-02 10:41:08] Set ATHENA_CORE_NUMBER=12
[2025-12-02 10:41:08] Starting ATLAS job with PandaID=6897309555
[2025-12-02 10:41:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 11:59:27]  *** The last 200 lines of the pilot log: ***
[2025-12-02 11:59:27] 2025-12-02 16:58:00,673 | INFO     | time since job start (4606s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:02,462 | INFO     | monitor loop #362: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:02,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:02,678 | INFO     | time since job start (4608s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:03,794 | INFO     | PID=371788 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 11:59:27] 2025-12-02 16:58:04,794 | INFO     | time since job start (4610s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:04,965 | INFO     | monitor loop #363: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:04,965 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:06,800 | INFO     | time since job start (4612s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:07,469 | INFO     | monitor loop #364: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:07,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:08,805 | INFO     | time since job start (4614s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:09,972 | INFO     | monitor loop #365: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:09,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:10,810 | INFO     | time since job start (4616s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:12,476 | INFO     | monitor loop #366: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:12,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:12,816 | INFO     | time since job start (4618s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:14,817 | INFO     | time since job start (4620s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:14,979 | INFO     | monitor loop #367: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:14,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:16,823 | INFO     | time since job start (4622s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:17,482 | INFO     | monitor loop #368: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:17,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:18,829 | INFO     | time since job start (4624s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:19,986 | INFO     | monitor loop #369: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:19,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:20,834 | INFO     | time since job start (4626s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:22,489 | INFO     | monitor loop #370: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:22,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:22,839 | INFO     | time since job start (4628s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:24,845 | INFO     | time since job start (4630s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:24,992 | INFO     | monitor loop #371: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:24,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:25,926 | INFO     | PID=371788 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 11:59:27] 2025-12-02 16:58:26,926 | INFO     | time since job start (4632s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:27,495 | INFO     | monitor loop #372: job 0:6897309555 is in state 'finished'
[2025-12-02 11:59:27] 2025-12-02 16:58:27,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:59:27] 2025-12-02 16:58:28,932 | INFO     | time since job start (4634s) is within the limit (172800.0s)
[2025-12-02 11:59:27] 2025-12-02 16:58:29,294 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 11:59:27] 2025-12-02 16:58:29,296 | INFO     | found 14 cores (14 cores per socket, 1 socket) , CPU MHz: 2612.9790714285714
[2025-12-02 11:59:27] 2025-12-02 16:58:29,297 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6897309555/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 11:59:27] 2025-12-02 16:58:29,297 | INFO     | extracted standard info from prmon json
[2025-12-02 11:59:27] 2025-12-02 16:58:29,297 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | fitting pss+swap vs Time
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | sum of square deviations: 93240818.0
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | sum of deviations: -2065144813.0
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | mean x: 1764692411.0
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | mean y: 4163680.0149253733
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | intersect: 39089464059.051865
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | chi2: 0.9980657701387614
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | current memory leak: -22.15 B/s (using 67 data points, chi2=1.00)
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | could have reported an average CPU frequency of 3451 MHz (6 samples)
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | ..............................
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | . Timing measurements:
[2025-12-02 11:59:27] 2025-12-02 16:58:29,298 | INFO     | . get job = 0 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,299 | INFO     | . initial setup = 2 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,299 | INFO     | . payload setup = 3 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,299 | INFO     | . stage-in = 0 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,299 | INFO     | . payload execution = 4478 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,299 | INFO     | . stage-out = 0 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,299 | INFO     | . log creation = 0 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,299 | INFO     | ..............................
[2025-12-02 11:59:27] 2025-12-02 16:58:29,318 | INFO     | 
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | job summary report
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | --------------------------------------------------
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | PanDA job id: 6897309555
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | task id: 47531058
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | errors: (none)
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | pilot state: finished 
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | transexitcode: 0
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | exeerrorcode: 0
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | exeerrordiag: 
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | exitcode: 0
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | exitmsg: OK
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | cpuconsumptiontime: 48996 s
[2025-12-02 11:59:27] 2025-12-02 16:58:29,319 | INFO     | nevents: 1000
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | neventsw: 0
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | pid: 379033
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | pgrp: 379033
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | corecount: 12
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | event service: False
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | sizes: {0: 2284336, 2: 2284712, 11: 2284740, 4485: 2330712, 4486: 2339720, 4488: 2339776, 4622: 2340150}
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | --------------------------------------------------
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | 
[2025-12-02 11:59:27] 2025-12-02 16:58:29,320 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | job 6897309555 has completed (purged errors)
[2025-12-02 11:59:27] 2025-12-02 16:58:29,344 | INFO     | overall cleanup function is called
[2025-12-02 11:59:27] 2025-12-02 16:58:30,353 | INFO     | --- collectZombieJob: --- 10, [379033]
[2025-12-02 11:59:27] 2025-12-02 16:58:30,354 | INFO     | zombie collector waiting for pid 379033
[2025-12-02 11:59:27] 2025-12-02 16:58:30,354 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 11:59:27] 2025-12-02 16:58:30,354 | INFO     | collected zombie processes
[2025-12-02 11:59:27] 2025-12-02 16:58:30,354 | INFO     | will attempt to kill all subprocesses of pid=379033
[2025-12-02 11:59:27] 2025-12-02 16:58:30,411 | INFO     | process IDs to be killed: [379033] (in reverse order)
[2025-12-02 11:59:27] 2025-12-02 16:58:30,466 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 11:59:27] 2025-12-02 16:58:30,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 11:59:27] 2025-12-02 16:58:30,469 | INFO     | did not find any defunct processes belonging to 379033
[2025-12-02 11:59:27] 2025-12-02 16:58:30,470 | INFO     | did not find any defunct processes belonging to 379033
[2025-12-02 11:59:27] 2025-12-02 16:58:30,471 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 11:59:27] 2025-12-02 16:58:30,471 | INFO     | ready for new job
[2025-12-02 11:59:27] 2025-12-02 16:58:30,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 11:59:27] 2025-12-02 16:58:30,472 | INFO     | ***************************************
[2025-12-02 11:59:27] 2025-12-02 16:58:30,472 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 11:59:27] 2025-12-02 16:58:30,472 | INFO     | ***************************************
[2025-12-02 11:59:27] 2025-12-02 16:58:30,472 | INFO     | 
[2025-12-02 11:59:27] 2025-12-02 16:58:30,472 | INFO     | architecture information:
[2025-12-02 11:59:27] 2025-12-02 16:58:30,473 | INFO     | executing command: cat /etc/os-release
[2025-12-02 11:59:27] 2025-12-02 16:58:30,481 | INFO     | cat /etc/os-release:
[2025-12-02 11:59:27] NAME="CentOS Linux"
[2025-12-02 11:59:27] VERSION="7 (Core)"
[2025-12-02 11:59:27] ID="centos"
[2025-12-02 11:59:27] ID_LIKE="rhel fedora"
[2025-12-02 11:59:27] VERSION_ID="7"
[2025-12-02 11:59:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 11:59:27] ANSI_COLOR="0;31"
[2025-12-02 11:59:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 11:59:27] HOME_URL="https://www.centos.org/"
[2025-12-02 11:59:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 11:59:27] 
[2025-12-02 11:59:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 11:59:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 11:59:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 11:59:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 11:59:27] 
[2025-12-02 11:59:27] 2025-12-02 16:58:30,481 | INFO     | ***************************************
[2025-12-02 11:59:27] 2025-12-02 16:58:30,983 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-12-02 11:59:27] 2025-12-02 16:58:31,001 | INFO     | sufficient remaining disk space (397050642432 B)
[2025-12-02 11:59:27] 2025-12-02 16:58:31,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 11:59:27] 2025-12-02 16:58:31,002 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 11:59:27] 2025-12-02 16:58:31,002 | INFO     | update_server=False
[2025-12-02 11:59:27] 2025-12-02 16:58:31,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 11:59:27] 2025-12-02 16:58:31,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 11:59:27] 2025-12-02 16:58:31,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 11:59:27] 2025-12-02 16:58:31,004 | INFO     | aborting loop
[2025-12-02 11:59:27] 2025-12-02 16:58:31,661 | INFO     | all job control threads have been joined
[2025-12-02 11:59:27] 2025-12-02 16:58:31,861 | INFO     | all data control threads have been joined
[2025-12-02 11:59:27] 2025-12-02 16:58:31,940 | INFO     | all payload control threads have been joined
[2025-12-02 11:59:27] 2025-12-02 16:58:31,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 11:59:27] 2025-12-02 16:58:32,008 | INFO     | [job] retrieve thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,008 | INFO     | [job] job monitor thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,009 | INFO     | [job] queue monitor thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,075 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,317 | INFO     | [payload] failed_post thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 11:59:27] 2025-12-02 16:58:32,496 | INFO     | [job] validate thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,667 | INFO     | [job] control thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,684 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,708 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,866 | INFO     | [data] control thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:32,945 | INFO     | [payload] control thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:33,282 | INFO     | [data] copytool_in thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:33,358 | INFO     | [payload] validate_post thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:33,996 | INFO     | [data] copytool_out thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:36,460 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:58:41,867 | INFO     | job.realtimelogging is not enabled
[2025-12-02 11:59:27] 2025-12-02 16:58:42,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 11:59:27] 2025-12-02 16:59:02,099 | INFO     | PID=371788 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 11:59:27] 2025-12-02 16:59:02,099 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 11:59:27] 2025-12-02 16:59:02,099 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 11:59:27] 2025-12-02 16:59:02,099 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 11:59:27] 2025-12-02 16:59:21,942 | INFO     | [monitor] cgroup control has ended
[2025-12-02 11:59:27] 2025-12-02 16:59:22,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137831674783552)>', '<ExcThread(monitor, started 137831196387072)>']
[2025-12-02 11:59:27] 2025-12-02 16:59:23,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 11:59:27] 2025-12-02 16:59:23,204 | INFO     | [monitor] control thread has ended
[2025-12-02 11:59:27] 2025-12-02 16:59:27,774 | INFO     | all workflow threads have been joined
[2025-12-02 11:59:27] 2025-12-02 16:59:27,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 11:59:27] 2025-12-02 16:59:27,774 | INFO     | traces error code: 0
[2025-12-02 11:59:27] 2025-12-02 16:59:27,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 11:59:27] 2025-12-02 16:59:27,829 [wrapper] ==== pilot stdout END ====
[2025-12-02 11:59:27] 2025-12-02 16:59:27,832 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 11:59:27] 2025-12-02 16:59:27,834 [wrapper] pilotpid: 371788
[2025-12-02 11:59:27] 2025-12-02 16:59:27,838 [wrapper] Pilot exit status: 0
[2025-12-02 11:59:27] 2025-12-02 16:59:27,846 [wrapper] pandaids: 6897309555
[2025-12-02 11:59:27] 2025-12-02 16:59:27,864 [wrapper] cleanup supervisor_pilot  415941 371789
[2025-12-02 11:59:27] 2025-12-02 16:59:27,867 [wrapper] Test setup, not cleaning
[2025-12-02 11:59:27] 2025-12-02 16:59:27,869 [wrapper] apfmon messages muted
[2025-12-02 11:59:27] 2025-12-02 16:59:27,871 [wrapper] ==== wrapper stdout END ====
[2025-12-02 11:59:27] 2025-12-02 16:59:27,873 [wrapper] ==== wrapper stderr END ====
[2025-12-02 11:59:27]  *** Error codes and diagnostics ***
[2025-12-02 11:59:27]     "exeErrorCode": 0,
[2025-12-02 11:59:27]     "exeErrorDiag": "",
[2025-12-02 11:59:27]     "pilotErrorCode": 0,
[2025-12-02 11:59:27]     "pilotErrorDiag": "",
[2025-12-02 11:59:27]  *** Listing of results directory ***
[2025-12-02 11:59:27] total 1062808
[2025-12-02 11:59:27] -rw-r--r-- 1 root root    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-02 11:59:27] -rwx------ 1 4871 1028     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-02 11:59:27] -rw-r--r-- 1 root root      5112 Nov 28 05:32 queuedata.json
[2025-12-02 11:59:27] -rw-r--r-- 1 root root       100 Dec  2 10:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 11:59:27] -rwxr-xr-x 1 root root      7986 Dec  2 10:41 run_atlas
[2025-12-02 11:59:27] -rw-r--r-- 1 root root       105 Dec  2 10:41 job.xml
[2025-12-02 11:59:27] -rw-r--r-- 2 root root 377326400 Dec  2 10:41 EVNT.47531050._000470.pool.root.1
[2025-12-02 11:59:27] -rw-r--r-- 1 root root      9318 Dec  2 10:41 init_data.xml
[2025-12-02 11:59:27] drwxrwx--x 2 root root      4096 Dec  2 10:41 shared
[2025-12-02 11:59:27] -rw-r--r-- 2 root root    590119 Dec  2 10:41 input.tar.gz
[2025-12-02 11:59:27] -rw-r--r-- 2 root root     15847 Dec  2 10:41 start_atlas.sh
[2025-12-02 11:59:27] -rw-r--r-- 1 root root         0 Dec  2 10:41 boinc_lockfile
[2025-12-02 11:59:27] -rw-r--r-- 1 root root      2875 Dec  2 10:41 pandaJob.out
[2025-12-02 11:59:27] -rw------- 1 root root    989202 Dec  2 10:41 agis_schedconf.cvmfs.json
[2025-12-02 11:59:27] -rw------- 1 root root   1516240 Dec  2 10:41 agis_ddmendpoints.agis.ALL.json
[2025-12-02 11:59:27] drwxr-xr-x 5  320  320      4096 Dec  2 10:41 pilot3
[2025-12-02 11:59:27] -rw-r--r-- 1 root root       530 Dec  2 11:52 boinc_task_state.xml
[2025-12-02 11:59:27] -rw------- 1 root root 701826179 Dec  2 11:56 HITS.47531058._000851.pool.root.1
[2025-12-02 11:59:27] -rw------- 1 root root      1041 Dec  2 11:56 memory_monitor_summary.json
[2025-12-02 11:59:27] -rw------- 1 root root   1927183 Dec  2 11:56 log.47531058._000851.job.log.tgz.1
[2025-12-02 11:59:27] -rw------- 1 root root     27761 Dec  2 11:58 heartbeat.json
[2025-12-02 11:59:27] -rw-r--r-- 1 root root      8192 Dec  2 11:58 boinc_mmap_file
[2025-12-02 11:59:27] -rw-r--r-- 1 root root        27 Dec  2 11:58 wrapper_checkpoint.txt
[2025-12-02 11:59:27] -rw------- 1 root root        95 Dec  2 11:59 pilot_heartbeat.json
[2025-12-02 11:59:27] -rw------- 1 root root      4827 Dec  2 11:59 pilotlog.txt
[2025-12-02 11:59:27] -rw------- 1 root root    678858 Dec  2 11:59 log.47531058._000851.job.log.1
[2025-12-02 11:59:27] -rw------- 1 root root       353 Dec  2 11:59 output.list
[2025-12-02 11:59:27] -rw-r--r-- 1 root root       620 Dec  2 11:59 runtime_log
[2025-12-02 11:59:27] -rw------- 1 root root   2641920 Dec  2 11:59 result.tar.gz
[2025-12-02 11:59:27] -rw-r--r-- 1 root root      8861 Dec  2 11:59 runtime_log.err
[2025-12-02 11:59:27] -rw------- 1 root root       646 Dec  2 11:59 0MBLDmgtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZELKDmLbcwgn.diag
[2025-12-02 11:59:27] -rw-r--r-- 1 root root     22708 Dec  2 11:59 stderr.txt
[2025-12-02 11:59:27] HITS file was successfully produced:
[2025-12-02 11:59:27] -rw------- 1 root root 701826179 Dec  2 11:56 shared/HITS.pool.root.1
[2025-12-02 11:59:27]  *** Contents of shared directory: ***
[2025-12-02 11:59:27] total 1057048
[2025-12-02 11:59:27] -rw-r--r-- 2 root root 377326400 Dec  2 10:41 ATLAS.root_0
[2025-12-02 11:59:27] -rw-r--r-- 2 root root    590119 Dec  2 10:41 input.tar.gz
[2025-12-02 11:59:27] -rw-r--r-- 2 root root     15847 Dec  2 10:41 start_atlas.sh
[2025-12-02 11:59:27] -rw------- 1 root root 701826179 Dec  2 11:56 HITS.pool.root.1
[2025-12-02 11:59:27] -rw------- 1 root root   2641920 Dec  2 11:59 result.tar.gz
11:59:29 (368058): run_atlas exited; CPU time 48946.461053
11:59:29 (368058): called boinc_finish(0)

</stderr_txt>
]]>

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