Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:11:55 (511665): wrapper (7.7.26015): starting
02:11:55 (511665): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 02:11:55] Arguments: --nthreads 8
[2025-12-01 02:11:55] Threads: 8
[2025-12-01 02:11:55] Checking for CVMFS
[2025-12-01 02:11:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 02:11:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 02:11:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 02:11:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 02:11:57] 2.13.3.0 10079 35236 407076 153509 2 228 30681502 32935937 39481 16776704 0 389071599 99.796 197123521 28434 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 02:11:57] CVMFS is ok
[2025-12-01 02:11:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 02:11:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 02:11:57] Further information can be found at the LHC@home message board.
[2025-12-01 02:11:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 02:11:57] Checking for apptainer binary...
[2025-12-01 02:11:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 02:11:57] Running /usr/bin/apptainer --version
[2025-12-01 02:11:57] apptainer version 1.4.4-1.el9
[2025-12-01 02:11:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 02:11:58] lc-12-33.aglt2.org
[2025-12-01 02:11:58] apptainer works
[2025-12-01 02:11:58] Set ATHENA_PROC_NUMBER=8
[2025-12-01 02:11:58] Set ATHENA_CORE_NUMBER=8
[2025-12-01 02:11:58] Starting ATLAS job with PandaID=6896597949
[2025-12-01 02:11:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 08:40:09]  *** The last 200 lines of the pilot log: ***
[2025-12-02 08:40:09] 2025-12-02 13:38:28,900 | INFO     | time since job start (109510s) is within the limit (172800.0s)
[2025-12-02 08:40:09] 2025-12-02 13:38:30,093 | INFO     | monitor loop #4831: job 0:6896597949 is in state 'finished'
[2025-12-02 08:40:09] 2025-12-02 13:38:30,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:40:09] 2025-12-02 13:38:30,908 | INFO     | time since job start (109512s) is within the limit (172800.0s)
[2025-12-02 08:40:09] 2025-12-02 13:38:32,598 | INFO     | monitor loop #4832: job 0:6896597949 is in state 'finished'
[2025-12-02 08:40:09] 2025-12-02 13:38:32,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:40:09] 2025-12-02 13:38:32,925 | INFO     | time since job start (109514s) is within the limit (172800.0s)
[2025-12-02 08:40:09] 2025-12-02 13:38:34,945 | INFO     | time since job start (109516s) is within the limit (172800.0s)
[2025-12-02 08:40:09] 2025-12-02 13:38:35,103 | INFO     | monitor loop #4833: job 0:6896597949 is in state 'finished'
[2025-12-02 08:40:09] 2025-12-02 13:38:35,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:40:09] 2025-12-02 13:38:36,954 | INFO     | time since job start (109518s) is within the limit (172800.0s)
[2025-12-02 08:40:09] 2025-12-02 13:38:37,647 | INFO     | monitor loop #4834: job 0:6896597949 is in state 'finished'
[2025-12-02 08:40:09] 2025-12-02 13:38:37,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:40:09] 2025-12-02 13:38:38,961 | INFO     | time since job start (109520s) is within the limit (172800.0s)
[2025-12-02 08:40:09] 2025-12-02 13:38:39,587 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 08:40:09] 2025-12-02 13:38:39,609 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2691.790968749999
[2025-12-02 08:40:09] 2025-12-02 13:38:39,662 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896597949/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 08:40:09] 2025-12-02 13:38:39,663 | INFO     | extracted standard info from prmon json
[2025-12-02 08:40:09] 2025-12-02 13:38:39,673 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 08:40:09] 2025-12-02 13:38:39,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 08:40:09] 2025-12-02 13:38:39,762 | INFO     | fitting pss+swap vs Time
[2025-12-02 08:40:09] 2025-12-02 13:38:39,787 | INFO     | sum of square deviations: 1781359614566.2634
[2025-12-02 08:40:09] 2025-12-02 13:38:40,084 | INFO     | sum of deviations: 4746411723165.235
[2025-12-02 08:40:09] 2025-12-02 13:38:40,084 | INFO     | mean x: 1764628017.8950307
[2025-12-02 08:40:09] 2025-12-02 13:38:40,085 | INFO     | mean y: 3396836.3204913456
[2025-12-02 08:40:09] 2025-12-02 13:38:40,085 | INFO     | intersect: -4698433744.475605
[2025-12-02 08:40:09] 2025-12-02 13:38:40,091 | INFO     | chi2: 28.993371982748837
[2025-12-02 08:40:09] 2025-12-02 13:38:40,103 | INFO     | sum of square deviations: 1766483630652.6968
[2025-12-02 08:40:09] 2025-12-02 13:38:40,240 | INFO     | monitor loop #4835: job 0:6896597949 is in state 'finished'
[2025-12-02 08:40:09] 2025-12-02 13:38:40,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:40:09] 2025-12-02 13:38:40,411 | INFO     | sum of deviations: 5460566570109.075
[2025-12-02 08:40:09] 2025-12-02 13:38:40,412 | INFO     | mean x: 1764627865.405935
[2025-12-02 08:40:09] 2025-12-02 13:38:40,412 | INFO     | mean y: 3404156.0688689807
[2025-12-02 08:40:09] 2025-12-02 13:38:40,412 | INFO     | intersect: -5451425859.513124
[2025-12-02 08:40:09] 2025-12-02 13:38:40,434 | INFO     | chi2: 25.7180418549564
[2025-12-02 08:40:09] 2025-12-02 13:38:40,435 | INFO     | current chi2=25.7180418549564 (change=11.296823735236003 %)
[2025-12-02 08:40:09] 2025-12-02 13:38:40,435 | INFO     | right removable region: 1785
[2025-12-02 08:40:09] 2025-12-02 13:38:40,437 | INFO     | sum of square deviations: 1766479375292.6978
[2025-12-02 08:40:09] 2025-12-02 13:38:40,789 | INFO     | sum of deviations: 3866083997068.1973
[2025-12-02 08:40:09] 2025-12-02 13:38:40,789 | INFO     | mean x: 1764628170.405935
[2025-12-02 08:40:09] 2025-12-02 13:38:40,789 | INFO     | mean y: 3405858.3583426652
[2025-12-02 08:40:09] 2025-12-02 13:38:40,789 | INFO     | intersect: -3858626626.0298257
[2025-12-02 08:40:09] 2025-12-02 13:38:40,791 | INFO     | chi2: 24.50778676944142
[2025-12-02 08:40:09] 2025-12-02 13:38:40,792 | INFO     | current chi2=24.50778676944142 (change=15.47107116749427 %)
[2025-12-02 08:40:09] 2025-12-02 13:38:40,792 | INFO     | left removable region: 10
[2025-12-02 08:40:09] 2025-12-02 13:38:40,794 | INFO     | sum of square deviations: 1734040038937.336
[2025-12-02 08:40:09] 2025-12-02 13:38:40,988 | INFO     | time since job start (109522s) is within the limit (172800.0s)
[2025-12-02 08:40:09] 2025-12-02 13:38:41,004 | INFO     | sum of deviations: 3953747758334.5957
[2025-12-02 08:40:09] 2025-12-02 13:38:41,005 | INFO     | mean x: 1764628139.9301407
[2025-12-02 08:40:09] 2025-12-02 13:38:41,005 | INFO     | mean y: 3422541.5047887326
[2025-12-02 08:40:09] 2025-12-02 13:38:41,005 | INFO     | intersect: -4020068494.3876467
[2025-12-02 08:40:09] 2025-12-02 13:38:41,017 | INFO     | chi2: 17.318497111972754
[2025-12-02 08:40:09] 2025-12-02 13:38:41,018 | INFO     | current memory leak: 2.28 B/s (using 1775 data points, chi2=17.32)
[2025-12-02 08:40:09] 2025-12-02 13:38:41,019 | INFO     | could have reported an average CPU frequency of 2683 MHz (63 samples)
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | ..............................
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | . Timing measurements:
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | . get job = 0 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | . initial setup = 8 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | . payload setup = 101 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | . stage-in = 0 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | . payload execution = 109274 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,020 | INFO     | . stage-out = 20 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,030 | INFO     | . log creation = 3 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,031 | INFO     | ..............................
[2025-12-02 08:40:09] 2025-12-02 13:38:41,851 | INFO     | 
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | job summary report
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | --------------------------------------------------
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | PanDA job id: 6896597949
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | task id: 47538113
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | errors: (none)
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | pilot state: finished 
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | transexitcode: 0
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | exeerrorcode: 0
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | exeerrordiag: 
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | exitcode: 0
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | exitmsg: OK
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | cpuconsumptiontime: 224340 s
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | nevents: 1000
[2025-12-02 08:40:09] 2025-12-02 13:38:41,852 | INFO     | neventsw: 0
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | pid: 534989
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | pgrp: 534989
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | corecount: 8
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | event service: False
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | sizes: {0: 2284227, 1: 2284283, 2: 2284311, 3: 2284538, 4: 2284538, 16: 2284566, 27: 2284722, 38: 2284750, 41: 2285040, 49: 2285068, 109379: 2375208, 109380: 23754
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | --------------------------------------------------
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | 
[2025-12-02 08:40:09] 2025-12-02 13:38:41,853 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,972 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 08:40:09] 2025-12-02 13:38:41,973 | INFO     | job 6896597949 has completed (purged errors)
[2025-12-02 08:40:09] 2025-12-02 13:38:41,973 | INFO     | overall cleanup function is called
[2025-12-02 08:40:09] 2025-12-02 13:38:43,049 | INFO     | --- collectZombieJob: --- 10, [534989]
[2025-12-02 08:40:09] 2025-12-02 13:38:43,050 | INFO     | zombie collector waiting for pid 534989
[2025-12-02 08:40:09] 2025-12-02 13:38:43,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 08:40:09] 2025-12-02 13:38:43,050 | INFO     | collected zombie processes
[2025-12-02 08:40:09] 2025-12-02 13:38:43,050 | INFO     | will attempt to kill all subprocesses of pid=534989
[2025-12-02 08:40:09] 2025-12-02 13:38:47,663 | INFO     | process IDs to be killed: [534989] (in reverse order)
[2025-12-02 08:40:09] 2025-12-02 13:38:49,178 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 08:40:09] 2025-12-02 13:38:49,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 08:40:09] 2025-12-02 13:38:49,429 | INFO     | did not find any defunct processes belonging to 534989
[2025-12-02 08:40:09] 2025-12-02 13:38:49,737 | INFO     | did not find any defunct processes belonging to 534989
[2025-12-02 08:40:09] 2025-12-02 13:38:49,843 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 08:40:09] 2025-12-02 13:38:49,843 | INFO     | ready for new job
[2025-12-02 08:40:09] 2025-12-02 13:38:49,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 08:40:09] 2025-12-02 13:38:49,887 | INFO     | ***************************************
[2025-12-02 08:40:09] 2025-12-02 13:38:49,888 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 08:40:09] 2025-12-02 13:38:49,888 | INFO     | ***************************************
[2025-12-02 08:40:09] 2025-12-02 13:38:49,888 | INFO     | 
[2025-12-02 08:40:09] 2025-12-02 13:38:49,956 | INFO     | architecture information:
[2025-12-02 08:40:09] 2025-12-02 13:38:49,985 | INFO     | executing command: cat /etc/os-release
[2025-12-02 08:40:09] 2025-12-02 13:38:50,141 | INFO     | cat /etc/os-release:
[2025-12-02 08:40:09] NAME="CentOS Linux"
[2025-12-02 08:40:09] VERSION="7 (Core)"
[2025-12-02 08:40:09] ID="centos"
[2025-12-02 08:40:09] ID_LIKE="rhel fedora"
[2025-12-02 08:40:09] VERSION_ID="7"
[2025-12-02 08:40:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 08:40:09] ANSI_COLOR="0;31"
[2025-12-02 08:40:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 08:40:09] HOME_URL="https://www.centos.org/"
[2025-12-02 08:40:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 08:40:09] 
[2025-12-02 08:40:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 08:40:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 08:40:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 08:40:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 08:40:09] 
[2025-12-02 08:40:09] 2025-12-02 13:38:50,142 | INFO     | ***************************************
[2025-12-02 08:40:09] 2025-12-02 13:38:50,645 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-02 08:40:09] 2025-12-02 13:38:50,763 | INFO     | sufficient remaining disk space (71361888256 B)
[2025-12-02 08:40:09] 2025-12-02 13:38:50,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 08:40:09] 2025-12-02 13:38:50,764 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 08:40:09] 2025-12-02 13:38:50,764 | INFO     | update_server=False
[2025-12-02 08:40:09] 2025-12-02 13:38:50,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 08:40:09] 2025-12-02 13:38:50,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 08:40:09] 2025-12-02 13:38:50,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:40:09] 2025-12-02 13:38:50,789 | INFO     | all job control threads have been joined
[2025-12-02 08:40:09] 2025-12-02 13:38:51,196 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 08:40:09] 2025-12-02 13:38:51,395 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:40:09] 2025-12-02 13:38:51,396 | INFO     | aborting loop
[2025-12-02 08:40:09] 2025-12-02 13:38:51,770 | INFO     | [job] retrieve thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:51,794 | INFO     | [job] queue monitor thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:51,800 | INFO     | [job] control thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:51,903 | INFO     | all data control threads have been joined
[2025-12-02 08:40:09] 2025-12-02 13:38:52,154 | INFO     | all payload control threads have been joined
[2025-12-02 08:40:09] 2025-12-02 13:38:52,228 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,317 | INFO     | [payload] validate_post thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,422 | INFO     | [job] job monitor thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,464 | INFO     | [data] copytool_in thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,517 | INFO     | [job] validate thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,625 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,632 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,633 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,771 | INFO     | [data] copytool_out thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:52,909 | INFO     | [data] control thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:53,160 | INFO     | [payload] control thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:53,343 | INFO     | [payload] failed_post thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:38:55,205 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 08:40:09] 2025-12-02 13:39:20,435 | INFO     | PID=518999 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 08:40:09] 2025-12-02 13:39:20,435 | INFO     | .. there are 101 such processes running
[2025-12-02 08:40:09] 2025-12-02 13:39:20,436 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 08:40:09] 2025-12-02 13:39:20,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 08:40:09] 2025-12-02 13:39:20,436 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 08:40:09] 2025-12-02 13:39:42,121 | INFO     | [monitor] cgroup control has ended
[2025-12-02 08:40:09] 2025-12-02 13:39:42,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139743576069952)>', '<ExcThread(monitor, started 139742817523456)>']
[2025-12-02 08:40:09] 2025-12-02 13:39:43,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 08:40:09] 2025-12-02 13:39:43,738 | INFO     | [monitor] control thread has ended
[2025-12-02 08:40:09] 2025-12-02 13:39:47,876 | INFO     | all workflow threads have been joined
[2025-12-02 08:40:09] 2025-12-02 13:39:47,877 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 08:40:09] 2025-12-02 13:39:47,877 | INFO     | traces error code: 0
[2025-12-02 08:40:09] 2025-12-02 13:39:47,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 08:40:09] 2025-12-02 13:39:48,770 [wrapper] ==== pilot stdout END ====
[2025-12-02 08:40:09] 2025-12-02 13:39:48,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 08:40:09] 2025-12-02 13:39:48,837 [wrapper] pilotpid: 518999
[2025-12-02 08:40:09] 2025-12-02 13:39:48,867 [wrapper] Pilot exit status: 0
[2025-12-02 08:40:09] 2025-12-02 13:39:49,054 [wrapper] pandaids: 6896597949
[2025-12-02 08:40:09] 2025-12-02 13:39:49,344 [wrapper] cleanup supervisor_pilot 1377853 519000
[2025-12-02 08:40:09] 2025-12-02 13:39:49,357 [wrapper] Test setup, not cleaning
[2025-12-02 08:40:09] 2025-12-02 13:39:49,373 [wrapper] apfmon messages muted
[2025-12-02 08:40:09] 2025-12-02 13:39:49,426 [wrapper] ==== wrapper stdout END ====
[2025-12-02 08:40:09] 2025-12-02 13:39:49,440 [wrapper] ==== wrapper stderr END ====
[2025-12-02 08:40:09]  *** Error codes and diagnostics ***
[2025-12-02 08:40:09]     "exeErrorCode": 0,
[2025-12-02 08:40:09]     "exeErrorDiag": "",
[2025-12-02 08:40:09]     "pilotErrorCode": 0,
[2025-12-02 08:40:09]     "pilotErrorDiag": "",
[2025-12-02 08:40:09]  *** Listing of results directory ***
[2025-12-02 08:40:09] total 1088516
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-02 08:40:09] -rwx------. 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 05:32 queuedata.json
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas       100 Dec  1 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 08:40:09] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  1 02:11 run_atlas
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas       105 Dec  1 02:11 job.xml
[2025-12-02 08:40:09] -rw-r--r--. 2 boincer umatlas 375840559 Dec  1 02:11 EVNT.47528871._000161.pool.root.1
[2025-12-02 08:40:09] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 02:11 start_atlas.sh
[2025-12-02 08:40:09] drwxrwx--x. 2 boincer umatlas      4096 Dec  1 02:11 shared
[2025-12-02 08:40:09] -rw-r--r--. 2 boincer umatlas    590125 Dec  1 02:11 input.tar.gz
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas         0 Dec  1 02:11 boinc_lockfile
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas      2881 Dec  1 02:11 pandaJob.out
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas        57 Dec  1 02:11 setup.sh.local
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas    992513 Dec  1 02:13 agis_schedconf.cvmfs.json
[2025-12-02 08:40:09] drwx------. 5 boincer umatlas      4096 Dec  1 02:13 pilot3
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas       533 Dec  2 07:43 boinc_task_state.xml
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas 706782474 Dec  2 08:36 HITS.47538113._001573.pool.root.1
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas      6885 Dec  2 08:37 init_data.xml
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas      1071 Dec  2 08:37 memory_monitor_summary.json
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas   1516240 Dec  2 08:37 agis_ddmendpoints.agis.ALL.json
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas   2641780 Dec  2 08:37 log.47538113._001573.job.log.tgz.1
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas     28044 Dec  2 08:38 heartbeat.json
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas        95 Dec  2 08:39 pilot_heartbeat.json
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas      4824 Dec  2 08:39 pilotlog.txt
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas  11390936 Dec  2 08:39 log.47538113._001573.job.log.1
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas       353 Dec  2 08:39 output.list
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas       620 Dec  2 08:39 runtime_log
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas  14069760 Dec  2 08:39 result.tar.gz
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas      9344 Dec  2 08:39 runtime_log.err
[2025-12-02 08:40:09] -rw-------. 1 boincer umatlas       663 Dec  2 08:39 7dSNDmitAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqUOKDmbeuySo.diag
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas        29 Dec  2 08:40 wrapper_checkpoint.txt
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 08:40 boinc_mmap_file
[2025-12-02 08:40:09] -rw-r--r--. 1 boincer umatlas     21818 Dec  2 08:40 stderr.txt
[2025-12-02 08:40:10] HITS file was successfully produced:
[2025-12-02 08:40:10] -rw-------. 1 boincer umatlas 706782474 Dec  2 08:36 shared/HITS.pool.root.1
[2025-12-02 08:40:10]  *** Contents of shared directory: ***
[2025-12-02 08:40:10] total 1071596
[2025-12-02 08:40:10] -rw-r--r--. 2 boincer umatlas 375840559 Dec  1 02:11 ATLAS.root_0
[2025-12-02 08:40:10] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 02:11 start_atlas.sh
[2025-12-02 08:40:10] -rw-r--r--. 2 boincer umatlas    590125 Dec  1 02:11 input.tar.gz
[2025-12-02 08:40:10] -rw-------. 1 boincer umatlas 706782474 Dec  2 08:36 HITS.pool.root.1
[2025-12-02 08:40:10] -rw-------. 1 boincer umatlas  14069760 Dec  2 08:39 result.tar.gz
08:40:11 (511665): run_atlas exited; CPU time 228920.135024
08:40:11 (511665): called boinc_finish(0)

</stderr_txt>
]]>

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