Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
07:55:18 (3500429): wrapper (7.7.26015): starting
07:55:18 (3500429): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 07:55:18] Arguments: --nthreads 4
[2025-12-02 07:55:18] Threads: 4
[2025-12-02 07:55:18] Checking for CVMFS
[2025-12-02 07:55:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 07:55:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 07:55:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 07:55:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 07:55:18] 2.12.7.0 3613689 14888 50224 153546 1 110 4310980 6144001 5687 130560 1 47781577 99.985 1181872 693 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 07:55:18] CVMFS is ok
[2025-12-02 07:55:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 07:55:18] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 07:55:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 07:55:18] Further information can be found at the LHC@home message board.
[2025-12-02 07:55:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 07:55:18] Checking for apptainer binary...
[2025-12-02 07:55:18] apptainer is not installed, using version from CVMFS
[2025-12-02 07:55:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 07:55:18] biggy
[2025-12-02 07:55:18] apptainer works
[2025-12-02 07:55:18] Set ATHENA_PROC_NUMBER=4
[2025-12-02 07:55:18] Set ATHENA_CORE_NUMBER=4
[2025-12-02 07:55:18] Starting ATLAS job with PandaID=6898177915
[2025-12-02 07:55:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 14:02:05]  *** The last 200 lines of the pilot log: ***
[2025-12-02 14:02:05] 2025-12-02 13:01:04,654 | INFO     | monitor loop #1642: job 0:6898177915 is in state 'finished'
[2025-12-02 14:02:05] 2025-12-02 13:01:04,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:02:05] 2025-12-02 13:01:05,862 | INFO     | time since job start (21941s) is within the limit (172800.0s)
[2025-12-02 14:02:05] 2025-12-02 13:01:07,157 | INFO     | monitor loop #1643: job 0:6898177915 is in state 'finished'
[2025-12-02 14:02:05] 2025-12-02 13:01:07,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:02:05] 2025-12-02 13:01:07,515 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-02 14:02:05] 2025-12-02 13:01:07,627 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:02:05] 2025-12-02 13:01:07,627 | INFO     | job 6898177915 has state=finished
[2025-12-02 14:02:05] 2025-12-02 13:01:07,628 | INFO     | preparing for final server update for job 6898177915 in state='finished'
[2025-12-02 14:02:05] 2025-12-02 13:01:07,628 | INFO     | this job has now completed (state=finished)
[2025-12-02 14:02:05] 2025-12-02 13:01:07,628 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-02 14:02:05] 2025-12-02 13:01:07,628 | INFO     | log transfer has been attempted: DONE
[2025-12-02 14:02:05] 2025-12-02 13:01:07,628 | INFO     | job 6898177915 has finished - writing final server update
[2025-12-02 14:02:05] 2025-12-02 13:01:07,628 | INFO     | total number of processed events: 1000 (read)
[2025-12-02 14:02:05] 2025-12-02 13:01:07,629 | INFO     | executing command: lscpu
[2025-12-02 14:02:05] 2025-12-02 13:01:07,646 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 14:02:05] 2025-12-02 13:01:07,867 | INFO     | time since job start (21943s) is within the limit (172800.0s)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,600 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 14:02:05] 2025-12-02 13:01:09,602 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5130.789875
[2025-12-02 14:02:05] 2025-12-02 13:01:09,605 | INFO     | using path: /single_8TB/boinc-client/slots/6/PanDA_Pilot-6898177915/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,608 | INFO     | extracted standard info from prmon json
[2025-12-02 14:02:05] 2025-12-02 13:01:09,608 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 14:02:05] 2025-12-02 13:01:09,608 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 14:02:05] 2025-12-02 13:01:09,611 | INFO     | fitting pss+swap vs Time
[2025-12-02 14:02:05] 2025-12-02 13:01:09,611 | INFO     | sum of square deviations: 14467136370.0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,612 | INFO     | sum of deviations: 747050738132.0001
[2025-12-02 14:02:05] 2025-12-02 13:01:09,613 | INFO     | mean x: 1764669492.5
[2025-12-02 14:02:05] 2025-12-02 13:01:09,613 | INFO     | mean y: 2415485.7
[2025-12-02 14:02:05] 2025-12-02 13:01:09,613 | INFO     | intersect: -91121191371.62218
[2025-12-02 14:02:05] 2025-12-02 13:01:09,613 | INFO     | chi2: 18.9027645407879
[2025-12-02 14:02:05] 2025-12-02 13:01:09,613 | INFO     | sum of square deviations: 13872669410.0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,614 | INFO     | sum of deviations: 716349979019.0001
[2025-12-02 14:02:05] 2025-12-02 13:01:09,614 | INFO     | mean x: 1764669340.0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,614 | INFO     | mean y: 2407390.8647887325
[2025-12-02 14:02:05] 2025-12-02 13:01:09,614 | INFO     | intersect: -91120707225.65173
[2025-12-02 14:02:05] 2025-12-02 13:01:09,614 | INFO     | chi2: 16.435512189982628
[2025-12-02 14:02:05] 2025-12-02 13:01:09,614 | INFO     | current chi2=16.435512189982628 (change=13.052336051065428 %)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,614 | INFO     | right removable region: 354
[2025-12-02 14:02:05] 2025-12-02 13:01:09,615 | INFO     | sum of square deviations: 13872669410.0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | sum of deviations: 684529267592.0001
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | mean x: 1764669645.0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | mean y: 2431440.138028169
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | intersect: -87072952823.17693
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | chi2: 17.51408139477023
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | current chi2=17.51408139477023 (change=7.346455292405535 %)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | left removable region: 10
[2025-12-02 14:02:05] 2025-12-02 13:01:09,616 | INFO     | sum of square deviations: 12622636670.0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | sum of deviations: 609242689849.4999
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | mean x: 1764669614.5
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | mean y: 2418752.694767442
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | intersect: -85170916323.07907
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | chi2: 14.403709615942065
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | current memory leak: 48.27 B/s (using 344 data points, chi2=14.40)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | could have reported an average CPU frequency of 5079 MHz (16 samples)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | ..............................
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | . Timing measurements:
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | . get job = 0 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,618 | INFO     | . initial setup = 1 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,619 | INFO     | . payload setup = 3 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,619 | INFO     | . stage-in = 0 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,619 | INFO     | . payload execution = 21916 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,619 | INFO     | . stage-out = 3 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,619 | INFO     | . log creation = 0 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,619 | INFO     | ..............................
[2025-12-02 14:02:05] 2025-12-02 13:01:09,655 | INFO     | 
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | job summary report
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | --------------------------------------------------
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | PanDA job id: 6898177915
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | task id: 47556161
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | errors: (none)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | pilot state: finished 
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | transexitcode: 0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | exeerrorcode: 0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | exeerrordiag: 
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | exitcode: 0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | exitmsg: OK
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | cpuconsumptiontime: 82643 s
[2025-12-02 14:02:05] 2025-12-02 13:01:09,656 | INFO     | nevents: 1000
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | neventsw: 0
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | pid: 3510973
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | pgrp: 3510973
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | corecount: 4
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | event service: False
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | sizes: {0: 2284274, 3: 2284536, 11: 2284564, 21923: 2320192, 21927: 2329206, 21930: 2329262, 21932: 2329636}
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | --------------------------------------------------
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | 
[2025-12-02 14:02:05] 2025-12-02 13:01:09,657 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/6
[2025-12-02 14:02:05] 2025-12-02 13:01:09,669 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,670 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 14:02:05] 2025-12-02 13:01:09,671 | INFO     | job 6898177915 has completed (purged errors)
[2025-12-02 14:02:05] 2025-12-02 13:01:09,671 | INFO     | overall cleanup function is called
[2025-12-02 14:02:05] 2025-12-02 13:01:10,681 | INFO     | --- collectZombieJob: --- 10, [3510973]
[2025-12-02 14:02:05] 2025-12-02 13:01:10,681 | INFO     | zombie collector waiting for pid 3510973
[2025-12-02 14:02:05] 2025-12-02 13:01:10,681 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 14:02:05] 2025-12-02 13:01:10,681 | INFO     | collected zombie processes
[2025-12-02 14:02:05] 2025-12-02 13:01:10,681 | INFO     | will attempt to kill all subprocesses of pid=3510973
[2025-12-02 14:02:05] 2025-12-02 13:01:10,789 | INFO     | process IDs to be killed: [3510973] (in reverse order)
[2025-12-02 14:02:05] 2025-12-02 13:01:10,835 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 14:02:05] 2025-12-02 13:01:10,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 14:02:05] 2025-12-02 13:01:10,839 | INFO     | did not find any defunct processes belonging to 3510973
[2025-12-02 14:02:05] 2025-12-02 13:01:10,842 | INFO     | did not find any defunct processes belonging to 3510973
[2025-12-02 14:02:05] 2025-12-02 13:01:10,843 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:02:05] 2025-12-02 13:01:10,843 | INFO     | ready for new job
[2025-12-02 14:02:05] 2025-12-02 13:01:10,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 14:02:05] 2025-12-02 13:01:10,844 | INFO     | ***************************************
[2025-12-02 14:02:05] 2025-12-02 13:01:10,844 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 14:02:05] 2025-12-02 13:01:10,844 | INFO     | ***************************************
[2025-12-02 14:02:05] 2025-12-02 13:01:10,844 | INFO     | 
[2025-12-02 14:02:05] 2025-12-02 13:01:10,845 | INFO     | architecture information:
[2025-12-02 14:02:05] 2025-12-02 13:01:10,845 | INFO     | executing command: cat /etc/os-release
[2025-12-02 14:02:05] 2025-12-02 13:01:10,852 | INFO     | cat /etc/os-release:
[2025-12-02 14:02:05] NAME="CentOS Linux"
[2025-12-02 14:02:05] VERSION="7 (Core)"
[2025-12-02 14:02:05] ID="centos"
[2025-12-02 14:02:05] ID_LIKE="rhel fedora"
[2025-12-02 14:02:05] VERSION_ID="7"
[2025-12-02 14:02:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 14:02:05] ANSI_COLOR="0;31"
[2025-12-02 14:02:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 14:02:05] HOME_URL="https://www.centos.org/"
[2025-12-02 14:02:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 14:02:05] 
[2025-12-02 14:02:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 14:02:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 14:02:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 14:02:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 14:02:05] 
[2025-12-02 14:02:05] 2025-12-02 13:01:10,853 | INFO     | ***************************************
[2025-12-02 14:02:05] 2025-12-02 13:01:11,355 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/6
[2025-12-02 14:02:05] 2025-12-02 13:01:11,363 | INFO     | sufficient remaining disk space (956200648704 B)
[2025-12-02 14:02:05] 2025-12-02 13:01:11,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 14:02:05] 2025-12-02 13:01:11,364 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 14:02:05] 2025-12-02 13:01:11,364 | INFO     | update_server=False
[2025-12-02 14:02:05] 2025-12-02 13:01:11,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 14:02:05] 2025-12-02 13:01:11,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:02:05] 2025-12-02 13:01:11,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:02:05] 2025-12-02 13:01:11,364 | INFO     | aborting loop
[2025-12-02 14:02:05] 2025-12-02 13:01:11,652 | INFO     | all payload control threads have been joined
[2025-12-02 14:02:05] 2025-12-02 13:01:11,961 | INFO     | all data control threads have been joined
[2025-12-02 14:02:05] 2025-12-02 13:01:12,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 14:02:05] 2025-12-02 13:01:12,366 | INFO     | [job] queue monitor thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:12,369 | INFO     | [job] retrieve thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:12,369 | INFO     | [job] job monitor thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:12,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:12,568 | INFO     | [payload] validate_post thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:12,657 | INFO     | [payload] control thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:12,697 | INFO     | all job control threads have been joined
[2025-12-02 14:02:05] 2025-12-02 13:01:12,966 | INFO     | [data] copytool_in thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:12,966 | INFO     | [data] control thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:13,158 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:13,171 | INFO     | [job] validate thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:13,460 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:13,460 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:13,483 | INFO     | [payload] failed_post thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:13,557 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 14:02:05] 2025-12-02 13:01:13,702 | INFO     | [job] control thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:14,092 | INFO     | [data] copytool_out thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:17,562 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 14:02:05] 2025-12-02 13:01:41,066 | INFO     | PID=3504280 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 14:02:05] 2025-12-02 13:01:41,066 | INFO     | .. there are 3 such processes running
[2025-12-02 14:02:05] 2025-12-02 13:01:41,066 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 14:02:05] 2025-12-02 13:01:41,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 14:02:05] 2025-12-02 13:01:41,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 14:02:05] 2025-12-02 13:01:58,381 | INFO     | [monitor] cgroup control has ended
[2025-12-02 14:02:05] 2025-12-02 13:02:00,407 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140296910554944)>', '<ExcThread(monitor, started 140296197216000)>']
[2025-12-02 14:02:05] 2025-12-02 13:02:01,166 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 14:02:05] 2025-12-02 13:02:01,166 | INFO     | [monitor] control thread has ended
[2025-12-02 14:02:05] 2025-12-02 13:02:05,432 | INFO     | all workflow threads have been joined
[2025-12-02 14:02:05] 2025-12-02 13:02:05,432 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 14:02:05] 2025-12-02 13:02:05,432 | INFO     | traces error code: 0
[2025-12-02 14:02:05] 2025-12-02 13:02:05,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 14:02:05] 2025-12-02 13:02:05,498 [wrapper] ==== pilot stdout END ====
[2025-12-02 14:02:05] 2025-12-02 13:02:05,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 14:02:05] 2025-12-02 13:02:05,501 [wrapper] pilotpid: 3504280
[2025-12-02 14:02:05] 2025-12-02 13:02:05,503 [wrapper] Pilot exit status: 0
[2025-12-02 14:02:05] 2025-12-02 13:02:05,508 [wrapper] pandaids: 6898177915
[2025-12-02 14:02:05] 2025-12-02 13:02:05,539 [wrapper] cleanup supervisor_pilot 3788375 3504281
[2025-12-02 14:02:05] 2025-12-02 13:02:05,540 [wrapper] Test setup, not cleaning
[2025-12-02 14:02:05] 2025-12-02 13:02:05,542 [wrapper] apfmon messages muted
[2025-12-02 14:02:05] 2025-12-02 13:02:05,543 [wrapper] ==== wrapper stdout END ====
[2025-12-02 14:02:05] 2025-12-02 13:02:05,544 [wrapper] ==== wrapper stderr END ====
[2025-12-02 14:02:05]  *** Error codes and diagnostics ***
[2025-12-02 14:02:05]     "exeErrorCode": 0,
[2025-12-02 14:02:05]     "exeErrorDiag": "",
[2025-12-02 14:02:05]     "pilotErrorCode": 0,
[2025-12-02 14:02:05]     "pilotErrorDiag": "",
[2025-12-02 14:02:05]  *** Listing of results directory ***
[2025-12-02 14:02:05] total 1302560
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc    576529 Nov 26 04:33 pilot3.tar.gz
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc      5112 Nov 26 05:06 queuedata.json
[2025-12-02 14:02:05] -rwx------ 1 boinc boinc     36292 Nov 26 05:06 runpilot2-wrapper.sh
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc       100 Dec  2 07:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 14:02:05] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 07:55 run_atlas
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc       105 Dec  2 07:55 job.xml
[2025-12-02 14:02:05] -rw-r--r-- 2 boinc boinc 410363405 Dec  2 07:55 EVNT.47483658._002472.pool.root.1
[2025-12-02 14:02:05] drwxrwx--x 2 boinc boinc         5 Dec  2 07:55 shared
[2025-12-02 14:02:05] -rw-r--r-- 2 boinc boinc    590103 Dec  2 07:55 input.tar.gz
[2025-12-02 14:02:05] -rw-r--r-- 2 boinc boinc     15847 Dec  2 07:55 start_atlas.sh
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc      6807 Dec  2 07:55 init_data.xml
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc         0 Dec  2 07:55 boinc_setup_complete
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc         0 Dec  2 07:55 boinc_lockfile
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc      2785 Dec  2 07:55 pandaJob.out
[2025-12-02 14:02:05] -rw------- 1 boinc boinc    990257 Dec  2 07:55 agis_schedconf.cvmfs.json
[2025-12-02 14:02:05] drwx------ 5 boinc boinc        22 Dec  2 07:55 pilot3
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc       532 Dec  2 13:57 boinc_task_state.xml
[2025-12-02 14:02:05] -rw------- 1 boinc boinc 914044997 Dec  2 14:00 HITS.47556161._004542.pool.root.1
[2025-12-02 14:02:05] -rw------- 1 boinc boinc        95 Dec  2 14:00 pilot_heartbeat.json
[2025-12-02 14:02:05] -rw------- 1 boinc boinc      1063 Dec  2 14:00 memory_monitor_summary.json
[2025-12-02 14:02:05] -rw------- 1 boinc boinc   1516240 Dec  2 14:01 agis_ddmendpoints.agis.ALL.json
[2025-12-02 14:02:05] -rw------- 1 boinc boinc   1212163 Dec  2 14:01 log.47556161._004542.job.log.tgz.1
[2025-12-02 14:02:05] -rw------- 1 boinc boinc      8602 Dec  2 14:01 heartbeat.json
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc        28 Dec  2 14:01 wrapper_checkpoint.txt
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc      8192 Dec  2 14:01 boinc_mmap_file
[2025-12-02 14:02:05] -rw------- 1 boinc boinc      4834 Dec  2 14:02 pilotlog.txt
[2025-12-02 14:02:05] -rw------- 1 boinc boinc   3167274 Dec  2 14:02 log.47556161._004542.job.log.1
[2025-12-02 14:02:05] -rw------- 1 boinc boinc       353 Dec  2 14:02 output.list
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc       620 Dec  2 14:02 runtime_log
[2025-12-02 14:02:05] -rw------- 1 boinc boinc   4403200 Dec  2 14:02 result.tar.gz
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc      8940 Dec  2 14:02 runtime_log.err
[2025-12-02 14:02:05] -rw------- 1 boinc boinc       661 Dec  2 14:02 ysXLDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTvMKDmXT9k2m.diag
[2025-12-02 14:02:05] -rw-r--r-- 1 boinc boinc     21872 Dec  2 14:02 stderr.txt
[2025-12-02 14:02:05] HITS file was successfully produced:
[2025-12-02 14:02:05] -rw------- 1 boinc boinc 914044997 Dec  2 14:00 shared/HITS.pool.root.1
[2025-12-02 14:02:05]  *** Contents of shared directory: ***
[2025-12-02 14:02:05] total 1294984
[2025-12-02 14:02:05] -rw-r--r-- 2 boinc boinc 410363405 Dec  2 07:55 ATLAS.root_0
[2025-12-02 14:02:05] -rw-r--r-- 2 boinc boinc    590103 Dec  2 07:55 input.tar.gz
[2025-12-02 14:02:05] -rw-r--r-- 2 boinc boinc     15847 Dec  2 07:55 start_atlas.sh
[2025-12-02 14:02:05] -rw------- 1 boinc boinc 914044997 Dec  2 14:00 HITS.pool.root.1
[2025-12-02 14:02:05] -rw------- 1 boinc boinc   4403200 Dec  2 14:02 result.tar.gz
14:02:07 (3500429): run_atlas exited; CPU time 82568.137580
14:02:07 (3500429): called boinc_finish(0)

</stderr_txt>
]]>

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