Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:19 (4054804): wrapper (7.7.26015): starting
00:03:19 (4054804): wrapper: running run_atlas (--nthreads 9)
[2025-12-02 00:03:19] Arguments: --nthreads 9
[2025-12-02 00:03:19] Threads: 9
[2025-12-02 00:03:19] Checking for CVMFS
[2025-12-02 00:03:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:03:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:03:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:03:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:03:23] 2.13.3.0 11502 38199 385224 153544 3 321 27029807 32935937 36697 16776704 0 385170483 99.633 355898104 35216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 00:03:23] CVMFS is ok
[2025-12-02 00:03:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:03:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:03:23] Further information can be found at the LHC@home message board.
[2025-12-02 00:03:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:03:23] Checking for apptainer binary...
[2025-12-02 00:03:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:03:23] Running /usr/bin/apptainer --version
[2025-12-02 00:03:23] apptainer version 1.4.4-1.el9
[2025-12-02 00:03:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:03:24] c7-2-15.aglt2.org
[2025-12-02 00:03:24] apptainer works
[2025-12-02 00:03:24] Set ATHENA_PROC_NUMBER=9
[2025-12-02 00:03:24] Set ATHENA_CORE_NUMBER=9
[2025-12-02 00:03:24] Starting ATLAS job with PandaID=6900298825
[2025-12-02 00:03:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 12:47:35]  *** The last 200 lines of the pilot log: ***
[2025-12-03 12:47:35] 2025-12-03 17:46:13,258 | INFO     | time since job start (132060s) is within the limit (172800.0s)
[2025-12-03 12:47:35] 2025-12-03 17:46:14,003 | INFO     | monitor loop #5907: job 0:6900298825 is in state 'finished'
[2025-12-03 12:47:35] 2025-12-03 17:46:14,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:47:35] 2025-12-03 17:46:15,264 | INFO     | time since job start (132062s) is within the limit (172800.0s)
[2025-12-03 12:47:35] 2025-12-03 17:46:16,507 | INFO     | monitor loop #5908: job 0:6900298825 is in state 'finished'
[2025-12-03 12:47:35] 2025-12-03 17:46:16,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:47:35] 2025-12-03 17:46:17,274 | INFO     | time since job start (132064s) is within the limit (172800.0s)
[2025-12-03 12:47:35] 2025-12-03 17:46:19,014 | INFO     | monitor loop #5909: job 0:6900298825 is in state 'finished'
[2025-12-03 12:47:35] 2025-12-03 17:46:19,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:47:35] 2025-12-03 17:46:19,282 | INFO     | time since job start (132066s) is within the limit (172800.0s)
[2025-12-03 12:47:35] 2025-12-03 17:46:21,297 | INFO     | time since job start (132068s) is within the limit (172800.0s)
[2025-12-03 12:47:35] 2025-12-03 17:46:21,519 | INFO     | monitor loop #5910: job 0:6900298825 is in state 'finished'
[2025-12-03 12:47:35] 2025-12-03 17:46:21,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:47:35] 2025-12-03 17:46:23,307 | INFO     | time since job start (132070s) is within the limit (172800.0s)
[2025-12-03 12:47:35] 2025-12-03 17:46:24,032 | INFO     | monitor loop #5911: job 0:6900298825 is in state 'finished'
[2025-12-03 12:47:35] 2025-12-03 17:46:24,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:47:35] 2025-12-03 17:46:25,009 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 12:47:35] 2025-12-03 17:46:25,018 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3188.9573333333324
[2025-12-03 12:47:35] 2025-12-03 17:46:25,049 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6900298825/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 12:47:35] 2025-12-03 17:46:25,054 | INFO     | extracted standard info from prmon json
[2025-12-03 12:47:35] 2025-12-03 17:46:25,054 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 12:47:35] 2025-12-03 17:46:25,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 12:47:35] 2025-12-03 17:46:25,109 | INFO     | fitting pss+swap vs Time
[2025-12-03 12:47:35] 2025-12-03 17:46:25,111 | INFO     | sum of square deviations: 3129237627934.84
[2025-12-03 12:47:35] 2025-12-03 17:46:25,323 | INFO     | time since job start (132072s) is within the limit (172800.0s)
[2025-12-03 12:47:35] 2025-12-03 17:46:25,553 | INFO     | sum of deviations: 14628936199976.596
[2025-12-03 12:47:35] 2025-12-03 17:46:25,554 | INFO     | mean x: 1764718039.9768627
[2025-12-03 12:47:35] 2025-12-03 17:46:25,554 | INFO     | mean y: 3093102.3114298936
[2025-12-03 12:47:35] 2025-12-03 17:46:25,554 | INFO     | intersect: -8246822911.515449
[2025-12-03 12:47:35] 2025-12-03 17:46:25,556 | INFO     | chi2: 28.978958569150933
[2025-12-03 12:47:35] 2025-12-03 17:46:25,557 | INFO     | sum of square deviations: 3107568180370.256
[2025-12-03 12:47:35] 2025-12-03 17:46:25,697 | INFO     | sum of deviations: 15442239415242.586
[2025-12-03 12:47:35] 2025-12-03 17:46:25,697 | INFO     | mean x: 1764717887.4814472
[2025-12-03 12:47:35] 2025-12-03 17:46:25,698 | INFO     | mean y: 3098825.701762523
[2025-12-03 12:47:35] 2025-12-03 17:46:25,698 | INFO     | intersect: -8766200683.473528
[2025-12-03 12:47:35] 2025-12-03 17:46:25,699 | INFO     | chi2: 25.589496321200286
[2025-12-03 12:47:35] 2025-12-03 17:46:25,699 | INFO     | current chi2=25.589496321200286 (change=11.696287290181788 %)
[2025-12-03 12:47:35] 2025-12-03 17:46:25,700 | INFO     | right removable region: 2155
[2025-12-03 12:47:35] 2025-12-03 17:46:25,705 | INFO     | sum of square deviations: 3107565574450.2554
[2025-12-03 12:47:35] 2025-12-03 17:46:25,933 | INFO     | sum of deviations: 13642165044995.277
[2025-12-03 12:47:35] 2025-12-03 17:46:25,934 | INFO     | mean x: 1764718192.4814472
[2025-12-03 12:47:35] 2025-12-03 17:46:25,934 | INFO     | mean y: 3100045.8687384045
[2025-12-03 12:47:35] 2025-12-03 17:46:25,934 | INFO     | intersect: -7743985659.312741
[2025-12-03 12:47:35] 2025-12-03 17:46:25,943 | INFO     | chi2: 24.168492856590838
[2025-12-03 12:47:35] 2025-12-03 17:46:25,944 | INFO     | current chi2=24.168492856590838 (change=16.599857103495072 %)
[2025-12-03 12:47:35] 2025-12-03 17:46:25,944 | INFO     | left removable region: 10
[2025-12-03 12:47:35] 2025-12-03 17:46:25,946 | INFO     | sum of square deviations: 3060242845383.8506
[2025-12-03 12:47:35] 2025-12-03 17:46:26,231 | INFO     | sum of deviations: 13738816088645.611
[2025-12-03 12:47:35] 2025-12-03 17:46:26,231 | INFO     | mean x: 1764718161.9916084
[2025-12-03 12:47:35] 2025-12-03 17:46:26,231 | INFO     | mean y: 3113664.0326340324
[2025-12-03 12:47:35] 2025-12-03 17:46:26,231 | INFO     | intersect: -7919505389.70273
[2025-12-03 12:47:35] 2025-12-03 17:46:26,233 | INFO     | chi2: 15.805642880593345
[2025-12-03 12:47:35] 2025-12-03 17:46:26,233 | INFO     | current memory leak: 4.49 B/s (using 2145 data points, chi2=15.81)
[2025-12-03 12:47:35] 2025-12-03 17:46:26,238 | INFO     | could have reported an average CPU frequency of 3247 MHz (75 samples)
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | ..............................
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . Timing measurements:
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . get job = 1 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . initial setup = 7 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . payload setup = 86 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . stage-in = 0 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . payload execution = 131836 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . stage-out = 7 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | . log creation = 2 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,239 | INFO     | ..............................
[2025-12-03 12:47:35] 2025-12-03 17:46:26,397 | INFO     | 
[2025-12-03 12:47:35] 2025-12-03 17:46:26,397 | INFO     | job summary report
[2025-12-03 12:47:35] 2025-12-03 17:46:26,397 | INFO     | --------------------------------------------------
[2025-12-03 12:47:35] 2025-12-03 17:46:26,397 | INFO     | PanDA job id: 6900298825
[2025-12-03 12:47:35] 2025-12-03 17:46:26,397 | INFO     | task id: 47556173
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | errors: (none)
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | pilot state: finished 
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | transexitcode: 0
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | exeerrorcode: 0
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | exeerrordiag: 
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | exitcode: 0
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | exitmsg: OK
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | cpuconsumptiontime: 202735 s
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | nevents: 1000
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | neventsw: 0
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | pid: 4152777
[2025-12-03 12:47:35] 2025-12-03 17:46:26,398 | INFO     | pgrp: 4152777
[2025-12-03 12:47:35] 2025-12-03 17:46:26,399 | INFO     | corecount: 9
[2025-12-03 12:47:35] 2025-12-03 17:46:26,399 | INFO     | event service: False
[2025-12-03 12:47:35] 2025-12-03 17:46:26,399 | INFO     | sizes: {0: 2284091, 1: 2284175, 2: 2284346, 3: 2284374, 14: 2284402, 25: 2284430, 36: 2284586, 48: 2284614, 52: 2284904, 59: 2284932, 131926: 2366801, 131927: 2367
[2025-12-03 12:47:35] 2025-12-03 17:46:26,399 | INFO     | --------------------------------------------------
[2025-12-03 12:47:35] 2025-12-03 17:46:26,399 | INFO     | 
[2025-12-03 12:47:35] 2025-12-03 17:46:26,399 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-12-03 12:47:35] 2025-12-03 17:46:26,458 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,458 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,458 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,458 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,459 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 12:47:35] 2025-12-03 17:46:26,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,460 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 12:47:35] 2025-12-03 17:46:26,460 | INFO     | job 6900298825 has completed (purged errors)
[2025-12-03 12:47:35] 2025-12-03 17:46:26,460 | INFO     | overall cleanup function is called
[2025-12-03 12:47:35] 2025-12-03 17:46:27,492 | INFO     | --- collectZombieJob: --- 10, [4152777]
[2025-12-03 12:47:35] 2025-12-03 17:46:27,492 | INFO     | zombie collector waiting for pid 4152777
[2025-12-03 12:47:35] 2025-12-03 17:46:27,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 12:47:35] 2025-12-03 17:46:27,492 | INFO     | collected zombie processes
[2025-12-03 12:47:35] 2025-12-03 17:46:27,492 | INFO     | will attempt to kill all subprocesses of pid=4152777
[2025-12-03 12:47:35] 2025-12-03 17:46:29,580 | INFO     | process IDs to be killed: [4152777] (in reverse order)
[2025-12-03 12:47:35] 2025-12-03 17:46:29,934 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 12:47:35] 2025-12-03 17:46:29,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 12:47:35] 2025-12-03 17:46:29,971 | INFO     | did not find any defunct processes belonging to 4152777
[2025-12-03 12:47:35] 2025-12-03 17:46:30,019 | INFO     | did not find any defunct processes belonging to 4152777
[2025-12-03 12:47:35] 2025-12-03 17:46:30,034 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 12:47:35] 2025-12-03 17:46:30,034 | INFO     | ready for new job
[2025-12-03 12:47:35] 2025-12-03 17:46:30,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 12:47:35] 2025-12-03 17:46:30,045 | INFO     | ***************************************
[2025-12-03 12:47:35] 2025-12-03 17:46:30,045 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 12:47:35] 2025-12-03 17:46:30,045 | INFO     | ***************************************
[2025-12-03 12:47:35] 2025-12-03 17:46:30,045 | INFO     | 
[2025-12-03 12:47:35] 2025-12-03 17:46:30,050 | INFO     | architecture information:
[2025-12-03 12:47:35] 2025-12-03 17:46:30,050 | INFO     | executing command: cat /etc/os-release
[2025-12-03 12:47:35] 2025-12-03 17:46:30,091 | INFO     | cat /etc/os-release:
[2025-12-03 12:47:35] NAME="CentOS Linux"
[2025-12-03 12:47:35] VERSION="7 (Core)"
[2025-12-03 12:47:35] ID="centos"
[2025-12-03 12:47:35] ID_LIKE="rhel fedora"
[2025-12-03 12:47:35] VERSION_ID="7"
[2025-12-03 12:47:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 12:47:35] ANSI_COLOR="0;31"
[2025-12-03 12:47:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 12:47:35] HOME_URL="https://www.centos.org/"
[2025-12-03 12:47:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 12:47:35] 
[2025-12-03 12:47:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 12:47:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 12:47:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 12:47:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 12:47:35] 
[2025-12-03 12:47:35] 2025-12-03 17:46:30,091 | INFO     | ***************************************
[2025-12-03 12:47:35] 2025-12-03 17:46:30,595 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-12-03 12:47:35] 2025-12-03 17:46:30,678 | INFO     | sufficient remaining disk space (70386712576 B)
[2025-12-03 12:47:35] 2025-12-03 17:46:30,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 12:47:35] 2025-12-03 17:46:30,678 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 12:47:35] 2025-12-03 17:46:30,678 | INFO     | update_server=False
[2025-12-03 12:47:35] 2025-12-03 17:46:30,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 12:47:35] 2025-12-03 17:46:30,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:47:35] 2025-12-03 17:46:30,679 | INFO     | aborting loop
[2025-12-03 12:47:35] 2025-12-03 17:46:30,910 | INFO     | all data control threads have been joined
[2025-12-03 12:47:35] 2025-12-03 17:46:31,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 12:47:35] 2025-12-03 17:46:31,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:47:35] 2025-12-03 17:46:31,685 | INFO     | [job] retrieve thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:31,685 | INFO     | [job] job monitor thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:31,690 | INFO     | all payload control threads have been joined
[2025-12-03 12:47:35] 2025-12-03 17:46:31,856 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:31,856 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:31,856 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:31,929 | INFO     | [data] control thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:32,000 | INFO     | all job control threads have been joined
[2025-12-03 12:47:35] 2025-12-03 17:46:32,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 12:47:35] 2025-12-03 17:46:32,053 | INFO     | [payload] validate_post thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:32,443 | INFO     | [job] queue monitor thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:32,677 | INFO     | [data] copytool_in thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:32,707 | INFO     | [payload] control thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:32,822 | INFO     | [job] validate thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:33,012 | INFO     | [job] control thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:33,185 | INFO     | [payload] failed_post thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:33,186 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:34,017 | INFO     | [data] copytool_out thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:46:35,425 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 12:47:35] 2025-12-03 17:47:00,133 | INFO     | PID=4081902 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 12:47:35] 2025-12-03 17:47:00,133 | INFO     | .. there are 39 such processes running
[2025-12-03 12:47:35] 2025-12-03 17:47:00,134 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 12:47:35] 2025-12-03 17:47:00,134 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 12:47:35] 2025-12-03 17:47:00,134 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 12:47:35] 2025-12-03 17:47:26,878 | INFO     | [monitor] cgroup control has ended
[2025-12-03 12:47:35] 2025-12-03 17:47:28,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647874651968)>', '<ExcThread(monitor, started 139647162246912)>']
[2025-12-03 12:47:35] 2025-12-03 17:47:29,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 12:47:35] 2025-12-03 17:47:29,342 | INFO     | [monitor] control thread has ended
[2025-12-03 12:47:35] 2025-12-03 17:47:33,422 | INFO     | all workflow threads have been joined
[2025-12-03 12:47:35] 2025-12-03 17:47:33,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 12:47:35] 2025-12-03 17:47:33,423 | INFO     | traces error code: 0
[2025-12-03 12:47:35] 2025-12-03 17:47:33,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 12:47:35] 2025-12-03 17:47:34,089 [wrapper] ==== pilot stdout END ====
[2025-12-03 12:47:35] 2025-12-03 17:47:34,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 12:47:35] 2025-12-03 17:47:34,094 [wrapper] pilotpid: 4081902
[2025-12-03 12:47:35] 2025-12-03 17:47:34,095 [wrapper] Pilot exit status: 0
[2025-12-03 12:47:35] 2025-12-03 17:47:34,107 [wrapper] pandaids: 6900298825
[2025-12-03 12:47:35] 2025-12-03 17:47:34,587 [wrapper] cleanup supervisor_pilot  410671 4081903
[2025-12-03 12:47:35] 2025-12-03 17:47:34,593 [wrapper] Test setup, not cleaning
[2025-12-03 12:47:35] 2025-12-03 17:47:34,610 [wrapper] apfmon messages muted
[2025-12-03 12:47:35] 2025-12-03 17:47:34,627 [wrapper] ==== wrapper stdout END ====
[2025-12-03 12:47:35] 2025-12-03 17:47:34,649 [wrapper] ==== wrapper stderr END ====
[2025-12-03 12:47:35]  *** Error codes and diagnostics ***
[2025-12-03 12:47:35]     "exeErrorCode": 0,
[2025-12-03 12:47:35]     "exeErrorDiag": "",
[2025-12-03 12:47:35]     "pilotErrorCode": 0,
[2025-12-03 12:47:35]     "pilotErrorDiag": "",
[2025-12-03 12:47:35]  *** Listing of results directory ***
[2025-12-03 12:47:35] total 1326216
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-12-03 12:47:35] -rwx------. 1 boincer umatlas     36292 Nov 27 20:02 runpilot2-wrapper.sh
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 20:05 queuedata.json
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas       100 Dec  2 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 12:47:35] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 00:03 run_atlas
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas       105 Dec  2 00:03 job.xml
[2025-12-03 12:47:35] -rw-r--r--. 2 boincer umatlas 410915112 Dec  2 00:03 EVNT.47483658._003446.pool.root.1
[2025-12-03 12:47:35] -rw-r--r--. 2 boincer umatlas    590102 Dec  2 00:03 input.tar.gz
[2025-12-03 12:47:35] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 00:03 shared
[2025-12-03 12:47:35] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:03 start_atlas.sh
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas         0 Dec  2 00:03 boinc_lockfile
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas      2788 Dec  2 00:03 pandaJob.out
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas        57 Dec  2 00:03 setup.sh.local
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas    992001 Dec  2 00:05 agis_schedconf.cvmfs.json
[2025-12-03 12:47:35] drwx------. 5 boincer umatlas      4096 Dec  2 00:05 pilot3
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas       534 Dec  3 12:28 boinc_task_state.xml
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas      6949 Dec  3 12:39 init_data.xml
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas 909413018 Dec  3 12:44 HITS.47556173._004022.pool.root.1
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas      1069 Dec  3 12:45 memory_monitor_summary.json
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas   1516240 Dec  3 12:45 agis_ddmendpoints.agis.ALL.json
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas   2902288 Dec  3 12:45 log.47556173._004022.job.log.tgz.1
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas      8637 Dec  3 12:46 heartbeat.json
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas        95 Dec  3 12:47 pilot_heartbeat.json
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas      4825 Dec  3 12:47 pilotlog.txt
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas        30 Dec  3 12:47 wrapper_checkpoint.txt
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas  13992584 Dec  3 12:47 log.47556173._004022.job.log.1
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas       353 Dec  3 12:47 output.list
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 12:47 boinc_mmap_file
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas       620 Dec  3 12:47 runtime_log
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas  16916480 Dec  3 12:47 result.tar.gz
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas      9357 Dec  3 12:47 runtime_log.err
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas       668 Dec  3 12:47 gvZMDmO31i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRJOKDmpRyhQm.diag
[2025-12-03 12:47:35] -rw-r--r--. 1 boincer umatlas     21836 Dec  3 12:47 stderr.txt
[2025-12-03 12:47:35] HITS file was successfully produced:
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas 909413018 Dec  3 12:44 shared/HITS.pool.root.1
[2025-12-03 12:47:35]  *** Contents of shared directory: ***
[2025-12-03 12:47:35] total 1306512
[2025-12-03 12:47:35] -rw-r--r--. 2 boincer umatlas 410915112 Dec  2 00:03 ATLAS.root_0
[2025-12-03 12:47:35] -rw-r--r--. 2 boincer umatlas    590102 Dec  2 00:03 input.tar.gz
[2025-12-03 12:47:35] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:03 start_atlas.sh
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas 909413018 Dec  3 12:44 HITS.pool.root.1
[2025-12-03 12:47:35] -rw-------. 1 boincer umatlas  16916480 Dec  3 12:47 result.tar.gz
12:47:37 (4054804): run_atlas exited; CPU time 205631.034711
12:47:37 (4054804): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN