Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:22:44 (4088239): wrapper (7.7.26015): starting
05:22:44 (4088239): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 05:22:44] Arguments: --nthreads 9
[2025-12-01 05:22:44] Threads: 9
[2025-12-01 05:22:44] Checking for CVMFS
[2025-12-01 05:22:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 05:22:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 05:22:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 05:22:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 05:22:46] 2.13.2.0 5678 39976 180824 153512 2 385 20091839 39288832 8657 16776704 0 33463311 99.781 21621740 37727 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 05:22:46] CVMFS is ok
[2025-12-01 05:22:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 05:22:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 05:22:46] Further information can be found at the LHC@home message board.
[2025-12-01 05:22:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 05:22:46] Checking for apptainer binary...
[2025-12-01 05:22:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 05:22:46] Running /usr/bin/apptainer --version
[2025-12-01 05:22:46] apptainer version 1.4.4-1.el9
[2025-12-01 05:22:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 05:22:47] c-210-21.aglt2.org
[2025-12-01 05:22:47] apptainer works
[2025-12-01 05:22:47] Set ATHENA_PROC_NUMBER=9
[2025-12-01 05:22:47] Set ATHENA_CORE_NUMBER=9
[2025-12-01 05:22:47] Starting ATLAS job with PandaID=6893883826
[2025-12-01 05:22:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 05:07:58]  *** The last 200 lines of the pilot log: ***
[2025-12-02 05:07:58] 2025-12-02 10:07:08,332 | INFO     | time since job start (85372s) is within the limit (172800.0s)
[2025-12-02 05:07:58] 2025-12-02 10:07:09,598 | INFO     | monitor loop #5375: job 0:6893883826 is in state 'finished'
[2025-12-02 05:07:58] 2025-12-02 10:07:09,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:07:58] 2025-12-02 10:07:10,392 | INFO     | time since job start (85374s) is within the limit (172800.0s)
[2025-12-02 05:07:58] 2025-12-02 10:07:12,114 | INFO     | monitor loop #5376: job 0:6893883826 is in state 'finished'
[2025-12-02 05:07:58] 2025-12-02 10:07:12,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:07:58] 2025-12-02 10:07:12,399 | INFO     | time since job start (85376s) is within the limit (172800.0s)
[2025-12-02 05:07:58] 2025-12-02 10:07:14,406 | INFO     | time since job start (85378s) is within the limit (172800.0s)
[2025-12-02 05:07:58] 2025-12-02 10:07:14,648 | INFO     | monitor loop #5377: job 0:6893883826 is in state 'finished'
[2025-12-02 05:07:58] 2025-12-02 10:07:14,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:07:58] 2025-12-02 10:07:16,413 | INFO     | time since job start (85380s) is within the limit (172800.0s)
[2025-12-02 05:07:58] 2025-12-02 10:07:17,157 | INFO     | monitor loop #5378: job 0:6893883826 is in state 'finished'
[2025-12-02 05:07:58] 2025-12-02 10:07:17,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:07:58] 2025-12-02 10:07:18,419 | INFO     | time since job start (85382s) is within the limit (172800.0s)
[2025-12-02 05:07:58] 2025-12-02 10:07:19,662 | INFO     | monitor loop #5379: job 0:6893883826 is in state 'finished'
[2025-12-02 05:07:58] 2025-12-02 10:07:19,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:07:58] 2025-12-02 10:07:19,715 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 05:07:58] 2025-12-02 10:07:19,726 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1846250000003
[2025-12-02 05:07:58] 2025-12-02 10:07:19,741 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893883826/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 05:07:58] 2025-12-02 10:07:19,742 | INFO     | extracted standard info from prmon json
[2025-12-02 05:07:58] 2025-12-02 10:07:19,742 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 05:07:58] 2025-12-02 10:07:19,742 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 05:07:58] 2025-12-02 10:07:19,796 | INFO     | fitting pss+swap vs Time
[2025-12-02 05:07:58] 2025-12-02 10:07:19,802 | INFO     | sum of square deviations: 845428106283.9088
[2025-12-02 05:07:58] 2025-12-02 10:07:19,895 | INFO     | sum of deviations: 5302391527853.442
[2025-12-02 05:07:58] 2025-12-02 10:07:19,895 | INFO     | mean x: 1764627420.9613457
[2025-12-02 05:07:58] 2025-12-02 10:07:19,895 | INFO     | mean y: 3122155.3414459554
[2025-12-02 05:07:58] 2025-12-02 10:07:19,896 | INFO     | intersect: -11064342265.555344
[2025-12-02 05:07:58] 2025-12-02 10:07:19,902 | INFO     | chi2: 23.520917928941195
[2025-12-02 05:07:58] 2025-12-02 10:07:19,904 | INFO     | sum of square deviations: 836385250525.3954
[2025-12-02 05:07:58] 2025-12-02 10:07:20,007 | INFO     | sum of deviations: 5887740736945.556
[2025-12-02 05:07:58] 2025-12-02 10:07:20,007 | INFO     | mean x: 1764627268.4791667
[2025-12-02 05:07:58] 2025-12-02 10:07:20,008 | INFO     | mean y: 3132024.209051724
[2025-12-02 05:07:58] 2025-12-02 10:07:20,008 | INFO     | intersect: -12418975907.062134
[2025-12-02 05:07:58] 2025-12-02 10:07:20,010 | INFO     | chi2: 19.409042095881084
[2025-12-02 05:07:58] 2025-12-02 10:07:20,010 | INFO     | current chi2=19.409042095881084 (change=17.481783004738407 %)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,010 | INFO     | right removable region: 1391
[2025-12-02 05:07:58] 2025-12-02 10:07:20,016 | INFO     | sum of square deviations: 836381022615.396
[2025-12-02 05:07:58] 2025-12-02 10:07:20,113 | INFO     | sum of deviations: 4678840146349.319
[2025-12-02 05:07:58] 2025-12-02 10:07:20,113 | INFO     | mean x: 1764627573.4791667
[2025-12-02 05:07:58] 2025-12-02 10:07:20,113 | INFO     | mean y: 3132666.269396552
[2025-12-02 05:07:58] 2025-12-02 10:07:20,113 | INFO     | intersect: -9868457088.757795
[2025-12-02 05:07:58] 2025-12-02 10:07:20,115 | INFO     | chi2: 19.07837725131238
[2025-12-02 05:07:58] 2025-12-02 10:07:20,122 | INFO     | current chi2=19.07837725131238 (change=18.887616083054798 %)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,122 | INFO     | left removable region: 10
[2025-12-02 05:07:58] 2025-12-02 10:07:20,124 | INFO     | sum of square deviations: 816710004100.5474
[2025-12-02 05:07:58] 2025-12-02 10:07:20,261 | INFO     | sum of deviations: 4830816726599.065
[2025-12-02 05:07:58] 2025-12-02 10:07:20,262 | INFO     | mean x: 1764627543.018103
[2025-12-02 05:07:58] 2025-12-02 10:07:20,262 | INFO     | mean y: 3153263.437364229
[2025-12-02 05:07:58] 2025-12-02 10:07:20,262 | INFO     | intersect: -10434569071.57615
[2025-12-02 05:07:58] 2025-12-02 10:07:20,264 | INFO     | chi2: 11.301561450266497
[2025-12-02 05:07:58] 2025-12-02 10:07:20,264 | INFO     | current memory leak: 5.91 B/s (using 1381 data points, chi2=11.30)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,265 | INFO     | could have reported an average CPU frequency of 2586 MHz (50 samples)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,265 | INFO     | ..............................
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . Timing measurements:
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . get job = 0 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . initial setup = 5 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . payload setup = 67 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . stage-in = 0 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . payload execution = 85198 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . stage-out = 7 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | . log creation = 1 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,266 | INFO     | ..............................
[2025-12-02 05:07:58] 2025-12-02 10:07:20,427 | INFO     | time since job start (85384s) is within the limit (172800.0s)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | 
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | job summary report
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | --------------------------------------------------
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | PanDA job id: 6893883826
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | task id: 47523449
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | errors: (none)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 05:07:58] 2025-12-02 10:07:20,625 | INFO     | pilot state: finished 
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | transexitcode: 0
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | exeerrorcode: 0
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | exeerrordiag: 
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | exitcode: 0
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | exitmsg: OK
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | cpuconsumptiontime: 313564 s
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | nevents: 1000
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | neventsw: 0
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | pid: 4100954
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | pgrp: 4100954
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | corecount: 9
[2025-12-02 05:07:58] 2025-12-02 10:07:20,626 | INFO     | event service: False
[2025-12-02 05:07:58] 2025-12-02 10:07:20,627 | INFO     | sizes: {0: 2283430, 1: 2284115, 2: 2284314, 3: 2284314, 14: 2284342, 24: 2284370, 34: 2284788, 35: 2284816, 85270: 2349904, 85271: 2349903, 85279: 2358953, 85281: 
[2025-12-02 05:07:58] 2025-12-02 10:07:20,627 | INFO     | --------------------------------------------------
[2025-12-02 05:07:58] 2025-12-02 10:07:20,627 | INFO     | 
[2025-12-02 05:07:58] 2025-12-02 10:07:20,627 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-02 05:07:58] 2025-12-02 10:07:20,678 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,678 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,678 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 05:07:58] 2025-12-02 10:07:20,681 | INFO     | job 6893883826 has completed (purged errors)
[2025-12-02 05:07:58] 2025-12-02 10:07:20,681 | INFO     | overall cleanup function is called
[2025-12-02 05:07:58] 2025-12-02 10:07:21,732 | INFO     | --- collectZombieJob: --- 10, [4100954]
[2025-12-02 05:07:58] 2025-12-02 10:07:21,732 | INFO     | zombie collector waiting for pid 4100954
[2025-12-02 05:07:58] 2025-12-02 10:07:21,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 05:07:58] 2025-12-02 10:07:21,732 | INFO     | collected zombie processes
[2025-12-02 05:07:58] 2025-12-02 10:07:21,732 | INFO     | will attempt to kill all subprocesses of pid=4100954
[2025-12-02 05:07:58] 2025-12-02 10:07:23,159 | INFO     | process IDs to be killed: [4100954] (in reverse order)
[2025-12-02 05:07:58] 2025-12-02 10:07:23,231 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 05:07:58] 2025-12-02 10:07:23,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 05:07:58] 2025-12-02 10:07:23,248 | INFO     | did not find any defunct processes belonging to 4100954
[2025-12-02 05:07:58] 2025-12-02 10:07:23,260 | INFO     | did not find any defunct processes belonging to 4100954
[2025-12-02 05:07:58] 2025-12-02 10:07:23,268 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 05:07:58] 2025-12-02 10:07:23,268 | INFO     | ready for new job
[2025-12-02 05:07:58] 2025-12-02 10:07:23,268 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 05:07:58] 2025-12-02 10:07:23,278 | INFO     | ***************************************
[2025-12-02 05:07:58] 2025-12-02 10:07:23,278 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 05:07:58] 2025-12-02 10:07:23,282 | INFO     | ***************************************
[2025-12-02 05:07:58] 2025-12-02 10:07:23,283 | INFO     | 
[2025-12-02 05:07:58] 2025-12-02 10:07:23,285 | INFO     | architecture information:
[2025-12-02 05:07:58] 2025-12-02 10:07:23,285 | INFO     | executing command: cat /etc/os-release
[2025-12-02 05:07:58] 2025-12-02 10:07:23,449 | INFO     | cat /etc/os-release:
[2025-12-02 05:07:58] NAME="CentOS Linux"
[2025-12-02 05:07:58] VERSION="7 (Core)"
[2025-12-02 05:07:58] ID="centos"
[2025-12-02 05:07:58] ID_LIKE="rhel fedora"
[2025-12-02 05:07:58] VERSION_ID="7"
[2025-12-02 05:07:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 05:07:58] ANSI_COLOR="0;31"
[2025-12-02 05:07:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 05:07:58] HOME_URL="https://www.centos.org/"
[2025-12-02 05:07:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 05:07:58] 
[2025-12-02 05:07:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 05:07:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 05:07:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 05:07:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 05:07:58] 
[2025-12-02 05:07:58] 2025-12-02 10:07:23,449 | INFO     | ***************************************
[2025-12-02 05:07:58] 2025-12-02 10:07:23,953 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-02 05:07:58] 2025-12-02 10:07:24,015 | INFO     | sufficient remaining disk space (51119128576 B)
[2025-12-02 05:07:58] 2025-12-02 10:07:24,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 05:07:58] 2025-12-02 10:07:24,016 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 05:07:58] 2025-12-02 10:07:24,016 | INFO     | update_server=False
[2025-12-02 05:07:58] 2025-12-02 10:07:24,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 05:07:58] 2025-12-02 10:07:24,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:07:58] 2025-12-02 10:07:24,017 | INFO     | aborting loop
[2025-12-02 05:07:58] 2025-12-02 10:07:24,715 | INFO     | all data control threads have been joined
[2025-12-02 05:07:58] 2025-12-02 10:07:24,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 05:07:58] 2025-12-02 10:07:24,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 05:07:58] 2025-12-02 10:07:25,022 | INFO     | [job] retrieve thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:25,033 | INFO     | [job] job monitor thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:25,065 | INFO     | all job control threads have been joined
[2025-12-02 05:07:58] 2025-12-02 10:07:25,090 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:25,194 | INFO     | [payload] failed_post thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:25,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:07:58] 2025-12-02 10:07:25,507 | INFO     | all payload control threads have been joined
[2025-12-02 05:07:58] 2025-12-02 10:07:25,600 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:25,723 | INFO     | [data] control thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:25,834 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:25,859 | INFO     | [job] validate thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:26,059 | INFO     | [data] copytool_in thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:26,071 | INFO     | [job] control thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:26,235 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:26,438 | INFO     | [payload] validate_post thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:26,455 | INFO     | [job] queue monitor thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:26,513 | INFO     | [payload] control thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:26,782 | INFO     | [data] copytool_out thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:28,942 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 05:07:58] 2025-12-02 10:07:50,039 | INFO     | [monitor] cgroup control has ended
[2025-12-02 05:07:58] 2025-12-02 10:07:52,102 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032954361664)>', '<ExcThread(monitor, started 140032232908544)>']
[2025-12-02 05:07:58] 2025-12-02 10:07:54,184 | INFO     | PID=4092367 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 05:07:58] 2025-12-02 10:07:54,185 | INFO     | .. there are 7 such processes running
[2025-12-02 05:07:58] 2025-12-02 10:07:54,185 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 05:07:58] 2025-12-02 10:07:54,185 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 05:07:58] 2025-12-02 10:07:54,185 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 05:07:58] 2025-12-02 10:07:54,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 05:07:58] 2025-12-02 10:07:54,185 | INFO     | [monitor] control thread has ended
[2025-12-02 05:07:58] 2025-12-02 10:07:57,175 | INFO     | all workflow threads have been joined
[2025-12-02 05:07:58] 2025-12-02 10:07:57,175 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 05:07:58] 2025-12-02 10:07:57,175 | INFO     | traces error code: 0
[2025-12-02 05:07:58] 2025-12-02 10:07:57,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 05:07:58] 2025-12-02 10:07:57,470 [wrapper] ==== pilot stdout END ====
[2025-12-02 05:07:58] 2025-12-02 10:07:57,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 05:07:58] 2025-12-02 10:07:57,476 [wrapper] pilotpid: 4092367
[2025-12-02 05:07:58] 2025-12-02 10:07:57,479 [wrapper] Pilot exit status: 0
[2025-12-02 05:07:58] 2025-12-02 10:07:57,610 [wrapper] pandaids: 6893883826
[2025-12-02 05:07:58] 2025-12-02 10:07:57,743 [wrapper] cleanup supervisor_pilot 1811319 4092368
[2025-12-02 05:07:58] 2025-12-02 10:07:57,747 [wrapper] Test setup, not cleaning
[2025-12-02 05:07:58] 2025-12-02 10:07:57,750 [wrapper] apfmon messages muted
[2025-12-02 05:07:58] 2025-12-02 10:07:57,754 [wrapper] ==== wrapper stdout END ====
[2025-12-02 05:07:58] 2025-12-02 10:07:57,757 [wrapper] ==== wrapper stderr END ====
[2025-12-02 05:07:58]  *** Error codes and diagnostics ***
[2025-12-02 05:07:58]     "exeErrorCode": 0,
[2025-12-02 05:07:58]     "exeErrorDiag": "",
[2025-12-02 05:07:58]     "pilotErrorCode": 0,
[2025-12-02 05:07:58]     "pilotErrorDiag": "",
[2025-12-02 05:07:58]  *** Listing of results directory ***
[2025-12-02 05:07:58] total 1333744
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 16:12 pilot3.tar.gz
[2025-12-02 05:07:58] -rwx------. 1 boincer umatlas     36292 Nov 20 16:35 runpilot2-wrapper.sh
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 16:35 queuedata.json
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas       100 Dec  1 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 05:07:58] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  1 05:22 run_atlas
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas       105 Dec  1 05:22 job.xml
[2025-12-02 05:07:58] -rw-r--r--. 2 boincer umatlas 412395553 Dec  1 05:22 EVNT.47493127._000919.pool.root.1
[2025-12-02 05:07:58] -rw-r--r--. 2 boincer umatlas    590098 Dec  1 05:22 input.tar.gz
[2025-12-02 05:07:58] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 05:22 start_atlas.sh
[2025-12-02 05:07:58] drwxrwx--x. 2 boincer umatlas      4096 Dec  1 05:22 shared
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas         0 Dec  1 05:22 boinc_lockfile
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas      2782 Dec  1 05:22 pandaJob.out
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas        57 Dec  1 05:22 setup.sh.local
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas    992532 Dec  1 05:24 agis_schedconf.cvmfs.json
[2025-12-02 05:07:58] drwx------. 5 boincer umatlas      4096 Dec  1 05:24 pilot3
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas       533 Dec  2 04:42 boinc_task_state.xml
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas      6662 Dec  2 05:02 init_data.xml
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas 922039509 Dec  2 05:02 HITS.47523449._009181.pool.root.1
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas      1053 Dec  2 05:06 memory_monitor_summary.json
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas   1516240 Dec  2 05:06 agis_ddmendpoints.agis.ALL.json
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas   2575809 Dec  2 05:06 log.47523449._009181.job.log.tgz.1
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas        95 Dec  2 05:07 pilot_heartbeat.json
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas      8632 Dec  2 05:07 heartbeat.json
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 05:07 boinc_mmap_file
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas        29 Dec  2 05:07 wrapper_checkpoint.txt
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas      4823 Dec  2 05:07 pilotlog.txt
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas  11123141 Dec  2 05:07 log.47523449._009181.job.log.1
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas       353 Dec  2 05:07 output.list
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas       620 Dec  2 05:07 runtime_log
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas  13721600 Dec  2 05:07 result.tar.gz
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas      9343 Dec  2 05:07 runtime_log.err
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas       660 Dec  2 05:07 NFJMDmeURg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVZIKDmVLJiUo.diag
[2025-12-02 05:07:58] -rw-r--r--. 1 boincer umatlas     21812 Dec  2 05:07 stderr.txt
[2025-12-02 05:07:58] HITS file was successfully produced:
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas 922039509 Dec  2 05:02 shared/HITS.pool.root.1
[2025-12-02 05:07:58]  *** Contents of shared directory: ***
[2025-12-02 05:07:58] total 1317164
[2025-12-02 05:07:58] -rw-r--r--. 2 boincer umatlas 412395553 Dec  1 05:22 ATLAS.root_0
[2025-12-02 05:07:58] -rw-r--r--. 2 boincer umatlas    590098 Dec  1 05:22 input.tar.gz
[2025-12-02 05:07:58] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 05:22 start_atlas.sh
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas 922039509 Dec  2 05:02 HITS.pool.root.1
[2025-12-02 05:07:58] -rw-------. 1 boincer umatlas  13721600 Dec  2 05:07 result.tar.gz
05:08:00 (4088239): run_atlas exited; CPU time 314774.073708
05:08:00 (4088239): called boinc_finish(0)

</stderr_txt>
]]>

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