Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:37 (1504596): wrapper (7.7.26015): starting
00:09:37 (1504596): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 00:09:37] Arguments: --nthreads 8
[2025-12-01 00:09:37] Threads: 8
[2025-12-01 00:09:37] Checking for CVMFS
[2025-12-01 00:09:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:09:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:09:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:09:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:09:39] 2.13.3.0 7314 36750 314208 153505 0 1100 25643281 40960001 51779 16776704 0 552429567 99.755 344137919 49165 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 00:09:39] CVMFS is ok
[2025-12-01 00:09:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:09:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:09:39] Further information can be found at the LHC@home message board.
[2025-12-01 00:09:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:09:39] Checking for apptainer binary...
[2025-12-01 00:09:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:09:40] Running /usr/bin/apptainer --version
[2025-12-01 00:09:40] apptainer version 1.4.4-1.el9
[2025-12-01 00:09:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:09:40] c8-16-1.aglt2.org
[2025-12-01 00:09:40] apptainer works
[2025-12-01 00:09:40] Set ATHENA_PROC_NUMBER=8
[2025-12-01 00:09:40] Set ATHENA_CORE_NUMBER=8
[2025-12-01 00:09:41] Starting ATLAS job with PandaID=6898687174
[2025-12-01 00:09:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 17:54:00]  *** The last 200 lines of the pilot log: ***
[2025-12-01 17:54:00] 2025-12-01 22:53:12,871 | INFO     | monitor loop #3055: job 0:6898687174 is in state 'finished'
[2025-12-01 17:54:00] 2025-12-01 22:53:12,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 17:54:00] 2025-12-01 22:53:13,828 | INFO     | time since job start (63699s) is within the limit (172800.0s)
[2025-12-01 17:54:00] 2025-12-01 22:53:15,376 | INFO     | monitor loop #3056: job 0:6898687174 is in state 'finished'
[2025-12-01 17:54:00] 2025-12-01 22:53:15,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 17:54:00] 2025-12-01 22:53:15,837 | INFO     | time since job start (63701s) is within the limit (172800.0s)
[2025-12-01 17:54:00] 2025-12-01 22:53:17,881 | INFO     | monitor loop #3057: job 0:6898687174 is in state 'finished'
[2025-12-01 17:54:00] 2025-12-01 22:53:17,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 17:54:00] 2025-12-01 22:53:18,868 | INFO     | PID=1552424 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 17:54:00] 2025-12-01 22:53:18,869 | INFO     | .. there are 91 such processes running
[2025-12-01 17:54:00] 2025-12-01 22:53:19,869 | INFO     | time since job start (63705s) is within the limit (172800.0s)
[2025-12-01 17:54:00] 2025-12-01 22:53:20,404 | INFO     | monitor loop #3058: job 0:6898687174 is in state 'finished'
[2025-12-01 17:54:00] 2025-12-01 22:53:20,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 17:54:00] 2025-12-01 22:53:21,876 | INFO     | time since job start (63707s) is within the limit (172800.0s)
[2025-12-01 17:54:00] 2025-12-01 22:53:22,911 | INFO     | monitor loop #3059: job 0:6898687174 is in state 'finished'
[2025-12-01 17:54:00] 2025-12-01 22:53:22,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 17:54:00] 2025-12-01 22:53:23,885 | INFO     | time since job start (63709s) is within the limit (172800.0s)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,189 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-01 17:54:00] 2025-12-01 22:53:24,219 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3772.053695312499
[2025-12-01 17:54:00] 2025-12-01 22:53:24,279 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6898687174/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,280 | INFO     | extracted standard info from prmon json
[2025-12-01 17:54:00] 2025-12-01 22:53:24,280 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 17:54:00] 2025-12-01 22:53:24,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 17:54:00] 2025-12-01 22:53:24,326 | INFO     | fitting pss+swap vs Time
[2025-12-01 17:54:00] 2025-12-01 22:53:24,327 | INFO     | sum of square deviations: 348793843128.9844
[2025-12-01 17:54:00] 2025-12-01 22:53:24,370 | INFO     | sum of deviations: 2031407537438.4717
[2025-12-01 17:54:00] 2025-12-01 22:53:24,370 | INFO     | mean x: 1764597826.0538461
[2025-12-01 17:54:00] 2025-12-01 22:53:24,378 | INFO     | mean y: 2823400.795192308
[2025-12-01 17:54:00] 2025-12-01 22:53:24,378 | INFO     | intersect: -10274357217.521309
[2025-12-01 17:54:00] 2025-12-01 22:53:24,379 | INFO     | chi2: 21.42539374133776
[2025-12-01 17:54:00] 2025-12-01 22:53:24,379 | INFO     | sum of square deviations: 343788010466.2168
[2025-12-01 17:54:00] 2025-12-01 22:53:24,419 | INFO     | sum of deviations: 2367930108225.3613
[2025-12-01 17:54:00] 2025-12-01 22:53:24,420 | INFO     | mean x: 1764597673.5661836
[2025-12-01 17:54:00] 2025-12-01 22:53:24,420 | INFO     | mean y: 2833653.250241546
[2025-12-01 17:54:00] 2025-12-01 22:53:24,420 | INFO     | intersect: -12151295731.527704
[2025-12-01 17:54:00] 2025-12-01 22:53:24,420 | INFO     | chi2: 18.305306506404836
[2025-12-01 17:54:00] 2025-12-01 22:53:24,420 | INFO     | current chi2=18.305306506404836 (change=14.562566609513858 %)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,420 | INFO     | right removable region: 1034
[2025-12-01 17:54:00] 2025-12-01 22:53:24,445 | INFO     | sum of square deviations: 343786390306.2165
[2025-12-01 17:54:00] 2025-12-01 22:53:24,491 | INFO     | sum of deviations: 1633574910914.3625
[2025-12-01 17:54:00] 2025-12-01 22:53:24,491 | INFO     | mean x: 1764597978.5661836
[2025-12-01 17:54:00] 2025-12-01 22:53:24,491 | INFO     | mean y: 2835514.461835749
[2025-12-01 17:54:00] 2025-12-01 22:53:24,491 | INFO     | intersect: -8382030980.888178
[2025-12-01 17:54:00] 2025-12-01 22:53:24,492 | INFO     | chi2: 17.41971550540905
[2025-12-01 17:54:00] 2025-12-01 22:53:24,492 | INFO     | current chi2=17.41971550540905 (change=18.69593756029896 %)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,492 | INFO     | left removable region: 10
[2025-12-01 17:54:00] 2025-12-01 22:53:24,492 | INFO     | sum of square deviations: 332941065179.0
[2025-12-01 17:54:00] 2025-12-01 22:53:24,516 | INFO     | sum of deviations: 1648283229570.7656
[2025-12-01 17:54:00] 2025-12-01 22:53:24,516 | INFO     | mean x: 1764597948.09375
[2025-12-01 17:54:00] 2025-12-01 22:53:24,516 | INFO     | mean y: 2860671.88671875
[2025-12-01 17:54:00] 2025-12-01 22:53:24,516 | INFO     | intersect: -8733091449.892483
[2025-12-01 17:54:00] 2025-12-01 22:53:24,517 | INFO     | chi2: 9.531818123578486
[2025-12-01 17:54:00] 2025-12-01 22:53:24,517 | INFO     | current memory leak: 4.95 B/s (using 1024 data points, chi2=9.53)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,518 | INFO     | could have reported an average CPU frequency of 3794 MHz (38 samples)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,518 | INFO     | ..............................
[2025-12-01 17:54:00] 2025-12-01 22:53:24,518 | INFO     | . Timing measurements:
[2025-12-01 17:54:00] 2025-12-01 22:53:24,518 | INFO     | . get job = 0 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,518 | INFO     | . initial setup = 4 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,521 | INFO     | . payload setup = 82 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,521 | INFO     | . stage-in = 0 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,521 | INFO     | . payload execution = 63464 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,521 | INFO     | . stage-out = 7 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,521 | INFO     | . log creation = 1 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,521 | INFO     | ..............................
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | 
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | job summary report
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | --------------------------------------------------
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | PanDA job id: 6898687174
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | task id: 47556161
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | errors: (none)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | pilot state: finished 
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | transexitcode: 0
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | exeerrorcode: 0
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | exeerrordiag: 
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | exitcode: 0
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | exitmsg: OK
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | cpuconsumptiontime: 137079 s
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | nevents: 1000
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | neventsw: 0
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | pid: 1643969
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | pgrp: 1643969
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | corecount: 8
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | event service: False
[2025-12-01 17:54:00] 2025-12-01 22:53:24,634 | INFO     | sizes: {0: 2284146, 1: 2284345, 12: 2284345, 23: 2284373, 34: 2284401, 44: 2284429, 55: 2284585, 57: 2284875, 66: 2284903, 63551: 2337831, 63552: 2337830, 63559: 2
[2025-12-01 17:54:00] 2025-12-01 22:53:24,635 | INFO     | --------------------------------------------------
[2025-12-01 17:54:00] 2025-12-01 22:53:24,635 | INFO     | 
[2025-12-01 17:54:00] 2025-12-01 22:53:24,635 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-12-01 17:54:00] 2025-12-01 22:53:24,866 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,867 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 17:54:00] 2025-12-01 22:53:24,868 | INFO     | job 6898687174 has completed (purged errors)
[2025-12-01 17:54:00] 2025-12-01 22:53:24,868 | INFO     | overall cleanup function is called
[2025-12-01 17:54:00] 2025-12-01 22:53:25,971 | INFO     | --- collectZombieJob: --- 10, [1643969]
[2025-12-01 17:54:00] 2025-12-01 22:53:25,971 | INFO     | zombie collector waiting for pid 1643969
[2025-12-01 17:54:00] 2025-12-01 22:53:25,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 17:54:00] 2025-12-01 22:53:25,971 | INFO     | collected zombie processes
[2025-12-01 17:54:00] 2025-12-01 22:53:25,971 | INFO     | will attempt to kill all subprocesses of pid=1643969
[2025-12-01 17:54:00] 2025-12-01 22:53:27,944 | INFO     | process IDs to be killed: [1643969] (in reverse order)
[2025-12-01 17:54:00] 2025-12-01 22:53:28,354 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 17:54:00] 2025-12-01 22:53:28,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 17:54:00] 2025-12-01 22:53:28,530 | INFO     | did not find any defunct processes belonging to 1643969
[2025-12-01 17:54:00] 2025-12-01 22:53:28,690 | INFO     | did not find any defunct processes belonging to 1643969
[2025-12-01 17:54:00] 2025-12-01 22:53:28,710 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 17:54:00] 2025-12-01 22:53:28,710 | INFO     | ready for new job
[2025-12-01 17:54:00] 2025-12-01 22:53:28,710 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 17:54:00] 2025-12-01 22:53:28,722 | INFO     | ***************************************
[2025-12-01 17:54:00] 2025-12-01 22:53:28,722 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 17:54:00] 2025-12-01 22:53:28,722 | INFO     | ***************************************
[2025-12-01 17:54:00] 2025-12-01 22:53:28,722 | INFO     | 
[2025-12-01 17:54:00] 2025-12-01 22:53:28,727 | INFO     | architecture information:
[2025-12-01 17:54:00] 2025-12-01 22:53:28,734 | INFO     | executing command: cat /etc/os-release
[2025-12-01 17:54:00] 2025-12-01 22:53:28,829 | INFO     | cat /etc/os-release:
[2025-12-01 17:54:00] NAME="CentOS Linux"
[2025-12-01 17:54:00] VERSION="7 (Core)"
[2025-12-01 17:54:00] ID="centos"
[2025-12-01 17:54:00] ID_LIKE="rhel fedora"
[2025-12-01 17:54:00] VERSION_ID="7"
[2025-12-01 17:54:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 17:54:00] ANSI_COLOR="0;31"
[2025-12-01 17:54:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 17:54:00] HOME_URL="https://www.centos.org/"
[2025-12-01 17:54:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 17:54:00] 
[2025-12-01 17:54:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 17:54:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 17:54:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 17:54:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 17:54:00] 
[2025-12-01 17:54:00] 2025-12-01 22:53:28,829 | INFO     | ***************************************
[2025-12-01 17:54:00] 2025-12-01 22:53:29,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-12-01 17:54:00] 2025-12-01 22:53:29,386 | INFO     | sufficient remaining disk space (166301007872 B)
[2025-12-01 17:54:00] 2025-12-01 22:53:29,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 17:54:00] 2025-12-01 22:53:29,386 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 17:54:00] 2025-12-01 22:53:29,386 | INFO     | update_server=False
[2025-12-01 17:54:00] 2025-12-01 22:53:29,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 17:54:00] 2025-12-01 22:53:29,387 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 17:54:00] 2025-12-01 22:53:29,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 17:54:00] 2025-12-01 22:53:29,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 17:54:00] 2025-12-01 22:53:29,396 | INFO     | aborting loop
[2025-12-01 17:54:00] 2025-12-01 22:53:29,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 17:54:00] 2025-12-01 22:53:30,225 | INFO     | all data control threads have been joined
[2025-12-01 17:54:00] 2025-12-01 22:53:30,392 | INFO     | [job] retrieve thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:30,402 | INFO     | [job] job monitor thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:30,654 | INFO     | [job] queue monitor thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:30,681 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:30,729 | INFO     | all payload control threads have been joined
[2025-12-01 17:54:00] 2025-12-01 22:53:30,834 | INFO     | [payload] validate_post thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:30,931 | INFO     | all job control threads have been joined
[2025-12-01 17:54:00] 2025-12-01 22:53:30,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,003 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,094 | INFO     | [job] validate thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,174 | INFO     | [data] copytool_in thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,250 | INFO     | [data] control thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,398 | INFO     | [data] copytool_out thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,431 | INFO     | [payload] failed_post thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,740 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,744 | INFO     | [payload] control thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:31,937 | INFO     | [job] control thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:33,396 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 17:54:00] 2025-12-01 22:53:40,291 | INFO     | [monitor] cgroup control has ended
[2025-12-01 17:54:00] 2025-12-01 22:53:41,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139991486531392)>', '<ExcThread(monitor, started 139991128712960)>']
[2025-12-01 17:54:00] 2025-12-01 22:53:47,014 | INFO     | all workflow threads have been joined
[2025-12-01 17:54:00] 2025-12-01 22:53:47,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 17:54:00] 2025-12-01 22:53:47,014 | INFO     | traces error code: 0
[2025-12-01 17:54:00] 2025-12-01 22:53:47,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 17:54:00] 2025-12-01 22:53:58,374 | INFO     | PID=1552424 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 17:54:00] 2025-12-01 22:53:58,380 | INFO     | .. there are 91 such processes running
[2025-12-01 17:54:00] 2025-12-01 22:53:58,381 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 17:54:00] 2025-12-01 22:53:58,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 17:54:00] 2025-12-01 22:53:58,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 17:54:00] 2025-12-01 22:53:58,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 17:54:00] 2025-12-01 22:53:58,381 | INFO     | [monitor] control thread has ended
[2025-12-01 17:54:00] 2025-12-01 22:53:58,735 [wrapper] ==== pilot stdout END ====
[2025-12-01 17:54:00] 2025-12-01 22:53:58,779 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 17:54:00] 2025-12-01 22:53:58,850 [wrapper] pilotpid: 1552424
[2025-12-01 17:54:00] 2025-12-01 22:53:58,867 [wrapper] Pilot exit status: 0
[2025-12-01 17:54:00] 2025-12-01 22:53:58,992 [wrapper] pandaids: 6898687174
[2025-12-01 17:54:00] 2025-12-01 22:53:59,832 [wrapper] cleanup supervisor_pilot 2754895 1552425
[2025-12-01 17:54:00] 2025-12-01 22:53:59,848 [wrapper] Test setup, not cleaning
[2025-12-01 17:54:00] 2025-12-01 22:53:59,868 [wrapper] apfmon messages muted
[2025-12-01 17:54:00] 2025-12-01 22:53:59,909 [wrapper] ==== wrapper stdout END ====
[2025-12-01 17:54:00] 2025-12-01 22:53:59,953 [wrapper] ==== wrapper stderr END ====
[2025-12-01 17:54:00]  *** Error codes and diagnostics ***
[2025-12-01 17:54:00]     "exeErrorCode": 0,
[2025-12-01 17:54:00]     "exeErrorDiag": "",
[2025-12-01 17:54:00]     "pilotErrorCode": 0,
[2025-12-01 17:54:00]     "pilotErrorDiag": "",
[2025-12-01 17:54:00]  *** Listing of results directory ***
[2025-12-01 17:54:00] total 1318512
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-12-01 17:54:00] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas       100 Dec  1 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 17:54:00] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  1 00:09 run_atlas
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas       105 Dec  1 00:09 job.xml
[2025-12-01 17:54:00] -rw-r--r--. 2 boincer umatlas 409465485 Dec  1 00:09 EVNT.47483658._002665.pool.root.1
[2025-12-01 17:54:00] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:09 start_atlas.sh
[2025-12-01 17:54:00] drwxrwx--x. 2 boincer umatlas      4096 Dec  1 00:09 shared
[2025-12-01 17:54:00] -rw-r--r--. 2 boincer umatlas    590103 Dec  1 00:09 input.tar.gz
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas         0 Dec  1 00:09 boinc_lockfile
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas      2787 Dec  1 00:09 pandaJob.out
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas        57 Dec  1 00:09 setup.sh.local
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas    993248 Dec  1 00:11 agis_schedconf.cvmfs.json
[2025-12-01 17:54:00] drwx------. 5 boincer umatlas      4096 Dec  1 00:11 pilot3
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas       532 Dec  1 17:33 boinc_task_state.xml
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas      7174 Dec  1 17:45 init_data.xml
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas 918491680 Dec  1 17:52 HITS.47556161._006472.pool.root.1
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas      1071 Dec  1 17:52 memory_monitor_summary.json
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas   1516240 Dec  1 17:52 agis_ddmendpoints.agis.ALL.json
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas   2081502 Dec  1 17:52 log.47556161._006472.job.log.tgz.1
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas      8591 Dec  1 17:53 heartbeat.json
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas        95 Dec  1 17:53 pilot_heartbeat.json
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas       823 Dec  1 17:53 pilotlog.txt
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas   7057967 Dec  1 17:53 log.47556161._006472.job.log.1
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 17:54 boinc_mmap_file
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas        28 Dec  1 17:54 wrapper_checkpoint.txt
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas       353 Dec  1 17:54 output.list
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas       620 Dec  1 17:54 runtime_log
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas   9154560 Dec  1 17:54 result.tar.gz
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas      9356 Dec  1 17:54 runtime_log.err
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas       660 Dec  1 17:54 ksMLDmEgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7DNKDmB808Kn.diag
[2025-12-01 17:54:00] -rw-r--r--. 1 boincer umatlas     21894 Dec  1 17:54 stderr.txt
[2025-12-01 17:54:00] HITS file was successfully produced:
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas 918491680 Dec  1 17:52 shared/HITS.pool.root.1
[2025-12-01 17:54:00]  *** Contents of shared directory: ***
[2025-12-01 17:54:00] total 1306384
[2025-12-01 17:54:00] -rw-r--r--. 2 boincer umatlas 409465485 Dec  1 00:09 ATLAS.root_0
[2025-12-01 17:54:00] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:09 start_atlas.sh
[2025-12-01 17:54:00] -rw-r--r--. 2 boincer umatlas    590103 Dec  1 00:09 input.tar.gz
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas 918491680 Dec  1 17:52 HITS.pool.root.1
[2025-12-01 17:54:00] -rw-------. 1 boincer umatlas   9154560 Dec  1 17:54 result.tar.gz
17:54:02 (1504596): run_atlas exited; CPU time 138190.324612
17:54:02 (1504596): called boinc_finish(0)

</stderr_txt>
]]>

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