Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:58 (3249295): wrapper (7.7.26015): starting
00:05:58 (3249295): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 00:05:58] Arguments: --nthreads 8
[2025-12-01 00:05:58] Threads: 8
[2025-12-01 00:05:58] Checking for CVMFS
[2025-12-01 00:05:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:06:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:06:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:06:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:06:03] 2.13.2.0 6639 40597 397148 153505 2 185 23581259 40960001 18328 16776704 0 85099979 99.627 90252329 41019 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 00:06:03] CVMFS is ok
[2025-12-01 00:06:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:06:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:06:03] Further information can be found at the LHC@home message board.
[2025-12-01 00:06:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:06:03] Checking for apptainer binary...
[2025-12-01 00:06:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:06:03] Running /usr/bin/apptainer --version
[2025-12-01 00:06:04] apptainer version 1.4.4-1.el9
[2025-12-01 00:06:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:06:05] c-206-37.aglt2.org
[2025-12-01 00:06:05] apptainer works
[2025-12-01 00:06:06] Set ATHENA_PROC_NUMBER=8
[2025-12-01 00:06:06] Set ATHENA_CORE_NUMBER=8
[2025-12-01 00:06:06] Starting ATLAS job with PandaID=6893860148
[2025-12-01 00:06:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 19:07:49]  *** The last 200 lines of the pilot log: ***
[2025-12-02 19:07:49] 2025-12-03 00:07:02,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:07:49] 2025-12-03 00:07:04,335 | INFO     | time since job start (154679s) is within the limit (172800.0s)
[2025-12-02 19:07:49] 2025-12-03 00:07:04,987 | INFO     | monitor loop #9994: job 0:6893860148 is in state 'finished'
[2025-12-02 19:07:49] 2025-12-03 00:07:04,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:07:49] 2025-12-03 00:07:06,342 | INFO     | time since job start (154681s) is within the limit (172800.0s)
[2025-12-02 19:07:49] 2025-12-03 00:07:07,493 | INFO     | monitor loop #9995: job 0:6893860148 is in state 'finished'
[2025-12-02 19:07:49] 2025-12-03 00:07:07,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:07:49] 2025-12-03 00:07:08,352 | INFO     | time since job start (154683s) is within the limit (172800.0s)
[2025-12-02 19:07:49] 2025-12-03 00:07:10,002 | INFO     | monitor loop #9996: job 0:6893860148 is in state 'finished'
[2025-12-02 19:07:49] 2025-12-03 00:07:10,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:07:49] 2025-12-03 00:07:10,359 | INFO     | time since job start (154685s) is within the limit (172800.0s)
[2025-12-02 19:07:49] 2025-12-03 00:07:12,365 | INFO     | time since job start (154687s) is within the limit (172800.0s)
[2025-12-02 19:07:49] 2025-12-03 00:07:12,531 | INFO     | monitor loop #9997: job 0:6893860148 is in state 'finished'
[2025-12-02 19:07:49] 2025-12-03 00:07:12,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:07:49] 2025-12-03 00:07:13,934 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 19:07:49] 2025-12-03 00:07:13,938 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3287.204718749999
[2025-12-02 19:07:49] 2025-12-03 00:07:13,948 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6893860148/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 19:07:49] 2025-12-03 00:07:13,949 | INFO     | extracted standard info from prmon json
[2025-12-02 19:07:49] 2025-12-03 00:07:13,950 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 19:07:49] 2025-12-03 00:07:13,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 19:07:49] 2025-12-03 00:07:14,165 | INFO     | fitting pss+swap vs Time
[2025-12-02 19:07:49] 2025-12-03 00:07:14,168 | INFO     | sum of square deviations: 5021550849499.319
[2025-12-02 19:07:49] 2025-12-03 00:07:14,391 | INFO     | time since job start (154689s) is within the limit (172800.0s)
[2025-12-02 19:07:49] 2025-12-03 00:07:14,517 | INFO     | sum of deviations: 22310786962169.19
[2025-12-02 19:07:49] 2025-12-03 00:07:14,517 | INFO     | mean x: 1764643238.312253
[2025-12-02 19:07:49] 2025-12-03 00:07:14,517 | INFO     | mean y: 2891272.828853755
[2025-12-02 19:07:49] 2025-12-03 00:07:14,517 | INFO     | intersect: -7837431474.902065
[2025-12-02 19:07:49] 2025-12-03 00:07:14,520 | INFO     | chi2: 36.26771082364121
[2025-12-02 19:07:49] 2025-12-03 00:07:14,522 | INFO     | sum of square deviations: 4991838862885.387
[2025-12-02 19:07:49] 2025-12-03 00:07:14,666 | INFO     | sum of deviations: 23197858977937.95
[2025-12-02 19:07:49] 2025-12-03 00:07:14,666 | INFO     | mean x: 1764643085.8158417
[2025-12-02 19:07:49] 2025-12-03 00:07:14,666 | INFO     | mean y: 2895826.217029703
[2025-12-02 19:07:49] 2025-12-03 00:07:14,666 | INFO     | intersect: -8197677664.948774
[2025-12-02 19:07:49] 2025-12-03 00:07:14,668 | INFO     | chi2: 32.911497488174746
[2025-12-02 19:07:49] 2025-12-03 00:07:14,668 | INFO     | current chi2=32.911497488174746 (change=9.253998279038628 %)
[2025-12-02 19:07:49] 2025-12-03 00:07:14,668 | INFO     | right removable region: 2524
[2025-12-02 19:07:49] 2025-12-03 00:07:14,670 | INFO     | sum of square deviations: 4991836066035.383
[2025-12-02 19:07:49] 2025-12-03 00:07:14,821 | INFO     | sum of deviations: 21198792977985.95
[2025-12-02 19:07:49] 2025-12-03 00:07:14,821 | INFO     | mean x: 1764643390.8158417
[2025-12-02 19:07:49] 2025-12-03 00:07:14,821 | INFO     | mean y: 2896979.8514851485
[2025-12-02 19:07:49] 2025-12-03 00:07:14,821 | INFO     | intersect: -7491000942.078194
[2025-12-02 19:07:49] 2025-12-03 00:07:14,823 | INFO     | chi2: 31.07558924241927
[2025-12-02 19:07:49] 2025-12-03 00:07:14,823 | INFO     | current chi2=31.07558924241927 (change=14.316099536774296 %)
[2025-12-02 19:07:49] 2025-12-03 00:07:14,823 | INFO     | left removable region: 10
[2025-12-02 19:07:49] 2025-12-03 00:07:14,834 | INFO     | sum of square deviations: 4926879974286.438
[2025-12-02 19:07:49] 2025-12-03 00:07:14,963 | INFO     | sum of deviations: 21261038234716.113
[2025-12-02 19:07:49] 2025-12-03 00:07:14,964 | INFO     | mean x: 1764643360.3237867
[2025-12-02 19:07:49] 2025-12-03 00:07:14,964 | INFO     | mean y: 2907847.8794749402
[2025-12-02 19:07:49] 2025-12-03 00:07:14,964 | INFO     | intersect: -7612083820.334589
[2025-12-02 19:07:49] 2025-12-03 00:07:14,966 | INFO     | chi2: 22.636973037411916
[2025-12-02 19:07:49] 2025-12-03 00:07:14,966 | INFO     | current memory leak: 4.32 B/s (using 2514 data points, chi2=22.64)
[2025-12-02 19:07:49] 2025-12-03 00:07:14,967 | INFO     | could have reported an average CPU frequency of 3277 MHz (88 samples)
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | ..............................
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . Timing measurements:
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . get job = 1 s
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . initial setup = 16 s
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . payload setup = 143 s
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . stage-in = 0 s
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . payload execution = 154374 s
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . stage-out = 4 s
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | . log creation = 1 s
[2025-12-02 19:07:49] 2025-12-03 00:07:14,968 | INFO     | ..............................
[2025-12-02 19:07:49] 2025-12-03 00:07:15,597 | INFO     | 
[2025-12-02 19:07:49] 2025-12-03 00:07:15,597 | INFO     | job summary report
[2025-12-02 19:07:49] 2025-12-03 00:07:15,597 | INFO     | --------------------------------------------------
[2025-12-02 19:07:49] 2025-12-03 00:07:15,597 | INFO     | PanDA job id: 6893860148
[2025-12-02 19:07:49] 2025-12-03 00:07:15,597 | INFO     | task id: 47523449
[2025-12-02 19:07:49] 2025-12-03 00:07:15,597 | INFO     | errors: (none)
[2025-12-02 19:07:49] 2025-12-03 00:07:15,597 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | pilot state: finished 
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | transexitcode: 0
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | exeerrorcode: 0
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | exeerrordiag: 
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | exitcode: 0
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | exitmsg: OK
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | cpuconsumptiontime: 201077 s
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | nevents: 1000
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | neventsw: 0
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | pid: 3267161
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | pgrp: 3267161
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | corecount: 8
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | event service: False
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | sizes: {0: 2283487, 1: 2284088, 2: 2284200, 3: 2284371, 4: 2284399, 15: 2284427, 26: 2284583, 37: 2284611, 49: 2284639, 60: 2284667, 72: 2284695, 76: 2285265, 84: 
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | --------------------------------------------------
[2025-12-02 19:07:49] 2025-12-03 00:07:15,598 | INFO     | 
[2025-12-02 19:07:49] 2025-12-03 00:07:15,599 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-12-02 19:07:49] 2025-12-03 00:07:15,676 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 19:07:49] 2025-12-03 00:07:15,678 | INFO     | job 6893860148 has completed (purged errors)
[2025-12-02 19:07:49] 2025-12-03 00:07:15,679 | INFO     | overall cleanup function is called
[2025-12-02 19:07:49] 2025-12-03 00:07:16,162 | INFO     | PID=3254704 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-02 19:07:49] 2025-12-03 00:07:16,162 | INFO     | .. there are 18 such processes running
[2025-12-02 19:07:49] 2025-12-03 00:07:16,795 | INFO     | --- collectZombieJob: --- 10, [3267161]
[2025-12-02 19:07:49] 2025-12-03 00:07:16,795 | INFO     | zombie collector waiting for pid 3267161
[2025-12-02 19:07:49] 2025-12-03 00:07:16,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 19:07:49] 2025-12-03 00:07:16,795 | INFO     | collected zombie processes
[2025-12-02 19:07:49] 2025-12-03 00:07:16,795 | INFO     | will attempt to kill all subprocesses of pid=3267161
[2025-12-02 19:07:49] 2025-12-03 00:07:17,214 | INFO     | process IDs to be killed: [3267161] (in reverse order)
[2025-12-02 19:07:49] 2025-12-03 00:07:17,347 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 19:07:49] 2025-12-03 00:07:17,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 19:07:49] 2025-12-03 00:07:17,361 | INFO     | did not find any defunct processes belonging to 3267161
[2025-12-02 19:07:49] 2025-12-03 00:07:17,373 | INFO     | did not find any defunct processes belonging to 3267161
[2025-12-02 19:07:49] 2025-12-03 00:07:17,374 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 19:07:49] 2025-12-03 00:07:17,375 | INFO     | ready for new job
[2025-12-02 19:07:49] 2025-12-03 00:07:17,375 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 19:07:49] 2025-12-03 00:07:17,424 | INFO     | ***************************************
[2025-12-02 19:07:49] 2025-12-03 00:07:17,425 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 19:07:49] 2025-12-03 00:07:17,425 | INFO     | ***************************************
[2025-12-02 19:07:49] 2025-12-03 00:07:17,425 | INFO     | 
[2025-12-02 19:07:49] 2025-12-03 00:07:17,431 | INFO     | architecture information:
[2025-12-02 19:07:49] 2025-12-03 00:07:17,431 | INFO     | executing command: cat /etc/os-release
[2025-12-02 19:07:49] 2025-12-03 00:07:17,458 | INFO     | cat /etc/os-release:
[2025-12-02 19:07:49] NAME="CentOS Linux"
[2025-12-02 19:07:49] VERSION="7 (Core)"
[2025-12-02 19:07:49] ID="centos"
[2025-12-02 19:07:49] ID_LIKE="rhel fedora"
[2025-12-02 19:07:49] VERSION_ID="7"
[2025-12-02 19:07:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 19:07:49] ANSI_COLOR="0;31"
[2025-12-02 19:07:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 19:07:49] HOME_URL="https://www.centos.org/"
[2025-12-02 19:07:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 19:07:49] 
[2025-12-02 19:07:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 19:07:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 19:07:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 19:07:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 19:07:49] 
[2025-12-02 19:07:49] 2025-12-03 00:07:17,458 | INFO     | ***************************************
[2025-12-02 19:07:49] 2025-12-03 00:07:17,962 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-12-02 19:07:49] 2025-12-03 00:07:17,985 | INFO     | sufficient remaining disk space (82870009856 B)
[2025-12-02 19:07:49] 2025-12-03 00:07:17,985 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 19:07:49] 2025-12-03 00:07:17,985 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 19:07:49] 2025-12-03 00:07:17,985 | INFO     | update_server=False
[2025-12-02 19:07:49] 2025-12-03 00:07:17,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 19:07:49] 2025-12-03 00:07:17,985 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 19:07:49] 2025-12-03 00:07:17,986 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 19:07:49] 2025-12-03 00:07:18,178 | INFO     | all data control threads have been joined
[2025-12-02 19:07:49] 2025-12-03 00:07:18,178 | INFO     | all payload control threads have been joined
[2025-12-02 19:07:49] 2025-12-03 00:07:18,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:07:49] 2025-12-03 00:07:18,606 | INFO     | aborting loop
[2025-12-02 19:07:49] 2025-12-03 00:07:18,995 | INFO     | [job] retrieve thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,097 | INFO     | all job control threads have been joined
[2025-12-02 19:07:49] 2025-12-03 00:07:19,131 | INFO     | [payload] failed_post thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,166 | INFO     | [job] validate thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,185 | INFO     | [data] control thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,193 | INFO     | [payload] control thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,612 | INFO     | [job] job monitor thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,671 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,829 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,866 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:19,940 | INFO     | [data] copytool_in thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:20,000 | INFO     | [data] copytool_out thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:20,102 | INFO     | [job] control thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:20,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:07:49] 2025-12-03 00:07:20,211 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:20,391 | INFO     | [payload] validate_post thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:21,148 | INFO     | [job] queue monitor thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:22,005 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 19:07:49] 2025-12-03 00:07:35,867 | INFO     | [monitor] cgroup control has ended
[2025-12-02 19:07:49] 2025-12-03 00:07:36,075 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140293168514880)>', '<ExcThread(monitor, started 140292514621184)>']
[2025-12-02 19:07:49] 2025-12-03 00:07:41,101 | INFO     | all workflow threads have been joined
[2025-12-02 19:07:49] 2025-12-03 00:07:41,101 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 19:07:49] 2025-12-03 00:07:41,101 | INFO     | traces error code: 0
[2025-12-02 19:07:49] 2025-12-03 00:07:41,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 19:07:49] 2025-12-03 00:07:48,799 | INFO     | PID=3254704 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 19:07:49] 2025-12-03 00:07:48,799 | INFO     | .. there are 18 such processes running
[2025-12-02 19:07:49] 2025-12-03 00:07:48,800 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 19:07:49] 2025-12-03 00:07:48,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 19:07:49] 2025-12-03 00:07:48,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 19:07:49] 2025-12-03 00:07:48,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 19:07:49] 2025-12-03 00:07:48,800 | INFO     | [monitor] control thread has ended
[2025-12-02 19:07:49] 2025-12-03 00:07:49,129 [wrapper] ==== pilot stdout END ====
[2025-12-02 19:07:49] 2025-12-03 00:07:49,132 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 19:07:49] 2025-12-03 00:07:49,134 [wrapper] pilotpid: 3254704
[2025-12-02 19:07:49] 2025-12-03 00:07:49,136 [wrapper] Pilot exit status: 0
[2025-12-02 19:07:49] 2025-12-03 00:07:49,188 [wrapper] pandaids: 6893860148
[2025-12-02 19:07:49] 2025-12-03 00:07:49,259 [wrapper] cleanup supervisor_pilot  485628 3254705
[2025-12-02 19:07:49] 2025-12-03 00:07:49,261 [wrapper] Test setup, not cleaning
[2025-12-02 19:07:49] 2025-12-03 00:07:49,289 [wrapper] apfmon messages muted
[2025-12-02 19:07:49] 2025-12-03 00:07:49,295 [wrapper] ==== wrapper stdout END ====
[2025-12-02 19:07:49] 2025-12-03 00:07:49,298 [wrapper] ==== wrapper stderr END ====
[2025-12-02 19:07:49]  *** Error codes and diagnostics ***
[2025-12-02 19:07:49]     "exeErrorCode": 0,
[2025-12-02 19:07:49]     "exeErrorDiag": "",
[2025-12-02 19:07:49]     "pilotErrorCode": 0,
[2025-12-02 19:07:49]     "pilotErrorDiag": "",
[2025-12-02 19:07:49]  *** Listing of results directory ***
[2025-12-02 19:07:49] total 1343664
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-12-02 19:07:49] -rwx------. 1 boincer umatlas     36292 Nov 20 08:39 runpilot2-wrapper.sh
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:39 queuedata.json
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas       100 Dec  1 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 19:07:49] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  1 00:05 run_atlas
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas       105 Dec  1 00:05 job.xml
[2025-12-02 19:07:49] -rw-r--r--. 2 boincer umatlas 411374966 Dec  1 00:05 EVNT.47493127._000544.pool.root.1
[2025-12-02 19:07:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:05 start_atlas.sh
[2025-12-02 19:07:49] drwxrwx--x. 2 boincer umatlas      4096 Dec  1 00:05 shared
[2025-12-02 19:07:49] -rw-r--r--. 2 boincer umatlas    590097 Dec  1 00:05 input.tar.gz
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas         0 Dec  1 00:05 boinc_lockfile
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas      2786 Dec  1 00:06 pandaJob.out
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas        57 Dec  1 00:06 setup.sh.local
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas    993248 Dec  1 00:08 agis_schedconf.cvmfs.json
[2025-12-02 19:07:49] drwx------. 5 boincer umatlas      4096 Dec  1 00:09 pilot3
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas       533 Dec  2 18:51 boinc_task_state.xml
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas      6901 Dec  2 19:02 init_data.xml
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas 913668560 Dec  2 19:06 HITS.47523449._005440.pool.root.1
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas      1051 Dec  2 19:06 memory_monitor_summary.json
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas   1516240 Dec  2 19:06 agis_ddmendpoints.agis.ALL.json
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas   3266366 Dec  2 19:06 log.47523449._005440.job.log.tgz.1
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas      8588 Dec  2 19:07 heartbeat.json
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas       823 Dec  2 19:07 pilotlog.txt
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas        95 Dec  2 19:07 pilot_heartbeat.json
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 19:07 boinc_mmap_file
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas        29 Dec  2 19:07 wrapper_checkpoint.txt
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas  20210808 Dec  2 19:07 log.47523449._005440.job.log.1
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas       353 Dec  2 19:07 output.list
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas       620 Dec  2 19:07 runtime_log
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas  23500800 Dec  2 19:07 result.tar.gz
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas      9344 Dec  2 19:07 runtime_log.err
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas       668 Dec  2 19:07 csHMDmE4Jg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcyHKDmdA3aKn.diag
[2025-12-02 19:07:49] -rw-r--r--. 1 boincer umatlas     12359 Dec  2 19:07 stderr.txt
[2025-12-02 19:07:49] HITS file was successfully produced:
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas 913668560 Dec  2 19:06 shared/HITS.pool.root.1
[2025-12-02 19:07:49]  *** Contents of shared directory: ***
[2025-12-02 19:07:49] total 1317544
[2025-12-02 19:07:49] -rw-r--r--. 2 boincer umatlas 411374966 Dec  1 00:05 ATLAS.root_0
[2025-12-02 19:07:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:05 start_atlas.sh
[2025-12-02 19:07:49] -rw-r--r--. 2 boincer umatlas    590097 Dec  1 00:05 input.tar.gz
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas 913668560 Dec  2 19:06 HITS.pool.root.1
[2025-12-02 19:07:49] -rw-------. 1 boincer umatlas  23500800 Dec  2 19:07 result.tar.gz
19:07:51 (3249295): run_atlas exited; CPU time 202466.646840
19:07:51 (3249295): called boinc_finish(0)

</stderr_txt>
]]>

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