Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:20:14 (21685): wrapper (7.7.26015): starting
20:20:14 (21685): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 20:20:14] Arguments: --nthreads 8
[2025-12-02 20:20:14] Threads: 8
[2025-12-02 20:20:14] Checking for CVMFS
[2025-12-02 20:20:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 20:20:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 20:20:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 20:20:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 20:20:17] 2.11.2.0 14339 294442 142492 153567 1 75 21749901 25165825 2504 130560 18 159251551 99.890 83300389 3542 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 20:20:17] CVMFS is ok
[2025-12-02 20:20:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 20:20:17] Checking for apptainer binary...
[2025-12-02 20:20:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 20:20:17] Running /usr/bin/apptainer --version
[2025-12-02 20:20:17] apptainer version 1.3.2-1.el7
[2025-12-02 20:20:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 20:20:29] cg-vwn496.simple-grid.lan
[2025-12-02 20:20:29] apptainer works
[2025-12-02 20:20:29] Set ATHENA_PROC_NUMBER=8
[2025-12-02 20:20:29] Set ATHENA_CORE_NUMBER=8
[2025-12-02 20:20:29] Starting ATLAS job with PandaID=6895351121
[2025-12-02 20:20:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 18:03:56]  *** The last 200 lines of the pilot log: ***
[2025-12-03 18:03:56] 2025-12-03 17:02:51,001 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 18:03:56] 2025-12-03 17:02:51,023 | INFO     | fitting pss+swap vs Time
[2025-12-03 18:03:56] 2025-12-03 17:02:51,025 | INFO     | sum of square deviations: 633670796677.5281
[2025-12-03 18:03:56] 2025-12-03 17:02:51,070 | INFO     | sum of deviations: 3540117059008.071
[2025-12-03 18:03:56] 2025-12-03 17:02:51,070 | INFO     | mean x: 1764742651.0441291
[2025-12-03 18:03:56] 2025-12-03 17:02:51,070 | INFO     | mean y: 2841592.016548463
[2025-12-03 18:03:56] 2025-12-03 17:02:51,071 | INFO     | intersect: -9856213924.628506
[2025-12-03 18:03:56] 2025-12-03 17:02:51,072 | INFO     | chi2: 19.137661359163232
[2025-12-03 18:03:56] 2025-12-03 17:02:51,074 | INFO     | sum of square deviations: 626210484167.0564
[2025-12-03 18:03:56] 2025-12-03 17:02:51,123 | INFO     | sum of deviations: 3963089695917.139
[2025-12-03 18:03:56] 2025-12-03 17:02:51,124 | INFO     | mean x: 1764742498.5482595
[2025-12-03 18:03:56] 2025-12-03 17:02:51,124 | INFO     | mean y: 2850237.0632911394
[2025-12-03 18:03:56] 2025-12-03 17:02:51,124 | INFO     | intersect: -11165651391.021723
[2025-12-03 18:03:56] 2025-12-03 17:02:51,125 | INFO     | chi2: 15.99487795572642
[2025-12-03 18:03:56] 2025-12-03 17:02:51,125 | INFO     | current chi2=15.99487795572642 (change=16.421982521558352 %)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,126 | INFO     | right removable region: 1263
[2025-12-03 18:03:56] 2025-12-03 17:02:51,127 | INFO     | sum of square deviations: 626209675917.0562
[2025-12-03 18:03:56] 2025-12-03 17:02:51,171 | INFO     | sum of deviations: 3005179006149.371
[2025-12-03 18:03:56] 2025-12-03 17:02:51,171 | INFO     | mean x: 1764742803.5482595
[2025-12-03 18:03:56] 2025-12-03 17:02:51,171 | INFO     | mean y: 2852525.305379747
[2025-12-03 18:03:56] 2025-12-03 17:02:51,171 | INFO     | intersect: -8466144726.629233
[2025-12-03 18:03:56] 2025-12-03 17:02:51,173 | INFO     | chi2: 14.26907914172226
[2025-12-03 18:03:56] 2025-12-03 17:02:51,173 | INFO     | current chi2=14.26907914172226 (change=25.439797089469685 %)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,175 | INFO     | sum of square deviations: 618807346956.5392
[2025-12-03 18:03:56] 2025-12-03 17:02:51,220 | INFO     | sum of deviations: 2535948324543.524
[2025-12-03 18:03:56] 2025-12-03 17:02:51,221 | INFO     | mean x: 1764742956.0524225
[2025-12-03 18:03:56] 2025-12-03 17:02:51,221 | INFO     | mean y: 2862191.7950754566
[2025-12-03 18:03:56] 2025-12-03 17:02:51,221 | INFO     | intersect: -7229270659.668049
[2025-12-03 18:03:56] 2025-12-03 17:02:51,223 | INFO     | chi2: 10.666770747339953
[2025-12-03 18:03:56] 2025-12-03 17:02:51,223 | INFO     | current chi2=10.666770747339953 (change=25.245556203057916 %)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,224 | INFO     | sum of square deviations: 611463577233.4802
[2025-12-03 18:03:56] 2025-12-03 17:02:51,272 | INFO     | sum of deviations: 2111919729417.4658
[2025-12-03 18:03:56] 2025-12-03 17:02:51,272 | INFO     | mean x: 1764743108.556619
[2025-12-03 18:03:56] 2025-12-03 17:02:51,272 | INFO     | mean y: 2870997.9019138757
[2025-12-03 18:03:56] 2025-12-03 17:02:51,272 | INFO     | intersect: -6092333895.865818
[2025-12-03 18:03:56] 2025-12-03 17:02:51,274 | INFO     | chi2: 7.7881978383305706
[2025-12-03 18:03:56] 2025-12-03 17:02:51,274 | INFO     | current chi2=7.7881978383305706 (change=26.986357700874304 %)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,276 | INFO     | sum of square deviations: 604178363304.7339
[2025-12-03 18:03:56] 2025-12-03 17:02:51,326 | INFO     | sum of deviations: 1929908157516.585
[2025-12-03 18:03:56] 2025-12-03 17:02:51,327 | INFO     | mean x: 1764743261.0584466
[2025-12-03 18:03:56] 2025-12-03 17:02:51,327 | INFO     | mean y: 2874803.115292234
[2025-12-03 18:03:56] 2025-12-03 17:02:51,327 | INFO     | intersect: -5634189716.723051
[2025-12-03 18:03:56] 2025-12-03 17:02:51,328 | INFO     | chi2: 7.135908565606338
[2025-12-03 18:03:56] 2025-12-03 17:02:51,329 | INFO     | current chi2=7.135908565606338 (change=8.375355714693207 %)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,329 | INFO     | left removable region: 40
[2025-12-03 18:03:56] 2025-12-03 17:02:51,330 | INFO     | sum of square deviations: 567228005403.2772
[2025-12-03 18:03:56] 2025-12-03 17:02:51,376 | INFO     | sum of deviations: 2234548190642.735
[2025-12-03 18:03:56] 2025-12-03 17:02:51,376 | INFO     | mean x: 1764743688.0621424
[2025-12-03 18:03:56] 2025-12-03 17:02:51,376 | INFO     | mean y: 2890063.2403924777
[2025-12-03 18:03:56] 2025-12-03 17:02:51,376 | INFO     | intersect: -6949172912.394668
[2025-12-03 18:03:56] 2025-12-03 17:02:51,378 | INFO     | chi2: 3.157669409777745
[2025-12-03 18:03:56] 2025-12-03 17:02:51,378 | INFO     | current memory leak: 3.94 B/s (using 1223 data points, chi2=3.16)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | ..............................
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . Timing measurements:
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . get job = 0 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . initial setup = 7 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . payload setup = 153 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . stage-in = 0 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . payload execution = 77528 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . stage-out = 3 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | . log creation = 0 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,380 | INFO     | ..............................
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | 
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | job summary report
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | --------------------------------------------------
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | PanDA job id: 6895351121
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | task id: 47556137
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | errors: (none)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | pilot state: finished 
[2025-12-03 18:03:56] 2025-12-03 17:02:51,585 | INFO     | transexitcode: 0
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | exeerrorcode: 0
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | exeerrordiag: 
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | exitcode: 0
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | exitmsg: OK
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | cpuconsumptiontime: 291536 s
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | nevents: 1000
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | neventsw: 0
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | pid: 32117
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | pgrp: 32117
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | corecount: 8
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | event service: False
[2025-12-03 18:03:56] 2025-12-03 17:02:51,586 | INFO     | sizes: {0: 2284043, 1: 2284242, 12: 2284242, 22: 2284270, 33: 2284298, 44: 2284354, 55: 2284510, 65: 2284538, 76: 2284566, 87: 2284622, 97: 2284650, 99: 2285220, 1
[2025-12-03 18:03:56] 2025-12-03 17:02:51,587 | INFO     | --------------------------------------------------
[2025-12-03 18:03:56] 2025-12-03 17:02:51,587 | INFO     | 
[2025-12-03 18:03:56] 2025-12-03 17:02:51,587 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-12-03 18:03:56] 2025-12-03 17:02:51,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,611 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 18:03:56] 2025-12-03 17:02:51,612 | INFO     | job 6895351121 has completed (purged errors)
[2025-12-03 18:03:56] 2025-12-03 17:02:51,612 | INFO     | overall cleanup function is called
[2025-12-03 18:03:56] 2025-12-03 17:02:52,628 | INFO     | --- collectZombieJob: --- 10, [32117]
[2025-12-03 18:03:56] 2025-12-03 17:02:52,628 | INFO     | zombie collector waiting for pid 32117
[2025-12-03 18:03:56] 2025-12-03 17:02:52,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 18:03:56] 2025-12-03 17:02:52,628 | INFO     | collected zombie processes
[2025-12-03 18:03:56] 2025-12-03 17:02:52,629 | INFO     | will attempt to kill all subprocesses of pid=32117
[2025-12-03 18:03:56] 2025-12-03 17:02:52,712 | INFO     | process IDs to be killed: [32117] (in reverse order)
[2025-12-03 18:03:56] 2025-12-03 17:02:52,780 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 18:03:56] 2025-12-03 17:02:52,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 18:03:56] 2025-12-03 17:02:52,783 | INFO     | did not find any defunct processes belonging to 32117
[2025-12-03 18:03:56] 2025-12-03 17:02:52,785 | INFO     | did not find any defunct processes belonging to 32117
[2025-12-03 18:03:56] 2025-12-03 17:02:52,787 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 18:03:56] 2025-12-03 17:02:52,787 | INFO     | ready for new job
[2025-12-03 18:03:56] 2025-12-03 17:02:52,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 18:03:56] 2025-12-03 17:02:52,792 | INFO     | ***************************************
[2025-12-03 18:03:56] 2025-12-03 17:02:52,792 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 18:03:56] 2025-12-03 17:02:52,792 | INFO     | ***************************************
[2025-12-03 18:03:56] 2025-12-03 17:02:52,792 | INFO     | 
[2025-12-03 18:03:56] 2025-12-03 17:02:52,793 | INFO     | pilot is running in a VM
[2025-12-03 18:03:56] 2025-12-03 17:02:52,793 | INFO     | architecture information:
[2025-12-03 18:03:56] 2025-12-03 17:02:52,793 | INFO     | executing command: cat /etc/os-release
[2025-12-03 18:03:56] 2025-12-03 17:02:52,815 | INFO     | cat /etc/os-release:
[2025-12-03 18:03:56] NAME="CentOS Linux"
[2025-12-03 18:03:56] VERSION="7 (Core)"
[2025-12-03 18:03:56] ID="centos"
[2025-12-03 18:03:56] ID_LIKE="rhel fedora"
[2025-12-03 18:03:56] VERSION_ID="7"
[2025-12-03 18:03:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 18:03:56] ANSI_COLOR="0;31"
[2025-12-03 18:03:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 18:03:56] HOME_URL="https://www.centos.org/"
[2025-12-03 18:03:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 18:03:56] 
[2025-12-03 18:03:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 18:03:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 18:03:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 18:03:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 18:03:56] 
[2025-12-03 18:03:56] 2025-12-03 17:02:52,815 | INFO     | ***************************************
[2025-12-03 18:03:56] 2025-12-03 17:02:53,319 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-12-03 18:03:56] 2025-12-03 17:02:53,336 | INFO     | sufficient remaining disk space (491164532736 B)
[2025-12-03 18:03:56] 2025-12-03 17:02:53,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 18:03:56] 2025-12-03 17:02:53,336 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 18:03:56] 2025-12-03 17:02:53,336 | INFO     | update_server=False
[2025-12-03 18:03:56] 2025-12-03 17:02:53,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 18:03:56] 2025-12-03 17:02:53,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:03:56] 2025-12-03 17:02:53,337 | INFO     | aborting loop
[2025-12-03 18:03:56] 2025-12-03 17:02:53,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:03:56] 2025-12-03 17:02:53,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 18:03:56] 2025-12-03 17:02:54,176 | INFO     | all job control threads have been joined
[2025-12-03 18:03:56] 2025-12-03 17:02:54,290 | INFO     | all data control threads have been joined
[2025-12-03 18:03:56] 2025-12-03 17:02:54,342 | INFO     | [job] queue monitor thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:54,343 | INFO     | [job] job monitor thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:54,343 | INFO     | [job] retrieve thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:54,507 | INFO     | all payload control threads have been joined
[2025-12-03 18:03:56] 2025-12-03 17:02:54,604 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,076 | INFO     | [data] copytool_in thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,183 | INFO     | [job] control thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,257 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,291 | INFO     | [data] control thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,309 | INFO     | [job] validate thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,380 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,496 | INFO     | [data] copytool_out thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,513 | INFO     | [payload] control thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,871 | INFO     | [payload] failed_post thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,915 | INFO     | [payload] validate_post thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:02:55,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 18:03:56] 2025-12-03 17:02:59,952 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 18:03:56] 2025-12-03 17:03:22,855 | INFO     | PID=25514 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 18:03:56] 2025-12-03 17:03:22,855 | INFO     | .. there are 9 such processes running
[2025-12-03 18:03:56] 2025-12-03 17:03:22,856 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 18:03:56] 2025-12-03 17:03:22,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 18:03:56] 2025-12-03 17:03:22,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 18:03:56] 2025-12-03 17:03:49,151 | INFO     | [monitor] cgroup control has ended
[2025-12-03 18:03:56] 2025-12-03 17:03:51,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140246378137408)>', '<ExcThread(monitor, started 140245932676864)>']
[2025-12-03 18:03:56] 2025-12-03 17:03:52,003 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 18:03:56] 2025-12-03 17:03:52,003 | INFO     | [monitor] control thread has ended
[2025-12-03 18:03:56] 2025-12-03 17:03:56,061 | INFO     | all workflow threads have been joined
[2025-12-03 18:03:56] 2025-12-03 17:03:56,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 18:03:56] 2025-12-03 17:03:56,061 | INFO     | traces error code: 0
[2025-12-03 18:03:56] 2025-12-03 17:03:56,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 18:03:56] 2025-12-03 17:03:56,209 [wrapper] ==== pilot stdout END ====
[2025-12-03 18:03:56] 2025-12-03 17:03:56,216 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 18:03:56] 2025-12-03 17:03:56,238 [wrapper] pilotpid: 25514
[2025-12-03 18:03:56] 2025-12-03 17:03:56,247 [wrapper] Pilot exit status: 0
[2025-12-03 18:03:56] 2025-12-03 17:03:56,298 [wrapper] pandaids: 6895351121
[2025-12-03 18:03:56] 2025-12-03 17:03:56,352 [wrapper] cleanup supervisor_pilot 13305 25515
[2025-12-03 18:03:56] 2025-12-03 17:03:56,383 [wrapper] Test setup, not cleaning
[2025-12-03 18:03:56] 2025-12-03 17:03:56,396 [wrapper] apfmon messages muted
[2025-12-03 18:03:56] 2025-12-03 17:03:56,404 [wrapper] ==== wrapper stdout END ====
[2025-12-03 18:03:56] 2025-12-03 17:03:56,430 [wrapper] ==== wrapper stderr END ====
[2025-12-03 18:03:56]  *** Error codes and diagnostics ***
[2025-12-03 18:03:56]     "exeErrorCode": 0,
[2025-12-03 18:03:56]     "exeErrorDiag": "",
[2025-12-03 18:03:56]     "pilotErrorCode": 0,
[2025-12-03 18:03:56]     "pilotErrorDiag": "",
[2025-12-03 18:03:56]  *** Listing of results directory ***
[2025-12-03 18:03:56] total 1318340
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc    576529 Nov 22 23:51 pilot3.tar.gz
[2025-12-03 18:03:56] -rwx------. 1 boinc boinc     36292 Nov 23 00:03 runpilot2-wrapper.sh
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc      5112 Nov 23 00:03 queuedata.json
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc       100 Dec  2 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 18:03:56] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 20:20 run_atlas
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc       105 Dec  2 20:20 job.xml
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc      6393 Dec  2 20:20 init_data.xml
[2025-12-03 18:03:56] -rw-r--r--. 2 boinc boinc 410526985 Dec  2 20:20 EVNT.47483658._000538.pool.root.1
[2025-12-03 18:03:56] -rw-r--r--. 2 boinc boinc     15847 Dec  2 20:20 start_atlas.sh
[2025-12-03 18:03:56] drwxrwx--x. 2 boinc boinc        68 Dec  2 20:20 shared
[2025-12-03 18:03:56] -rw-r--r--. 2 boinc boinc    590098 Dec  2 20:20 input.tar.gz
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc         0 Dec  2 20:20 boinc_lockfile
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc      2784 Dec  2 20:20 pandaJob.out
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc    989224 Dec  2 20:24 agis_schedconf.cvmfs.json
[2025-12-03 18:03:56] drwx------. 5 boinc boinc      4096 Dec  2 20:24 pilot3
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc       533 Dec  3 17:49 boinc_task_state.xml
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc 909952761 Dec  3 18:01 HITS.47556137._005332.pool.root.1
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc        95 Dec  3 18:02 pilot_heartbeat.json
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc      1033 Dec  3 18:02 memory_monitor_summary.json
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc   1516240 Dec  3 18:02 agis_ddmendpoints.agis.ALL.json
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc   2378586 Dec  3 18:02 log.47556137._005332.job.log.tgz.1
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc      8626 Dec  3 18:02 heartbeat.json
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc      8192 Dec  3 18:03 boinc_mmap_file
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc        29 Dec  3 18:03 wrapper_checkpoint.txt
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc      4885 Dec  3 18:03 pilotlog.txt
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc  10419218 Dec  3 18:03 log.47556137._005332.job.log.1
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc       353 Dec  3 18:03 output.list
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc       620 Dec  3 18:03 runtime_log
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc  12820480 Dec  3 18:03 result.tar.gz
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc      8833 Dec  3 18:03 runtime_log.err
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc       662 Dec  3 18:03 mEdNDmMoBh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3LIKDm22SAym.diag
[2025-12-03 18:03:56] -rw-r--r--. 1 boinc boinc     20829 Dec  3 18:03 stderr.txt
[2025-12-03 18:03:56] HITS file was successfully produced:
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc 909952761 Dec  3 18:01 shared/HITS.pool.root.1
[2025-12-03 18:03:56]  *** Contents of shared directory: ***
[2025-12-03 18:03:56] total 1302652
[2025-12-03 18:03:56] -rw-r--r--. 2 boinc boinc 410526985 Dec  2 20:20 ATLAS.root_0
[2025-12-03 18:03:56] -rw-r--r--. 2 boinc boinc     15847 Dec  2 20:20 start_atlas.sh
[2025-12-03 18:03:56] -rw-r--r--. 2 boinc boinc    590098 Dec  2 20:20 input.tar.gz
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc 909952761 Dec  3 18:01 HITS.pool.root.1
[2025-12-03 18:03:56] -rw-------. 1 boinc boinc  12820480 Dec  3 18:03 result.tar.gz
18:03:58 (21685): run_atlas exited; CPU time 292045.953119
18:03:58 (21685): called boinc_finish(0)

</stderr_txt>
]]>

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