Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:47 (3286295): wrapper (7.7.26015): starting
00:03:47 (3286295): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 00:03:47] Arguments: --nthreads 9
[2025-12-01 00:03:47] Threads: 9
[2025-12-01 00:03:47] Checking for CVMFS
[2025-12-01 00:03:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:03:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:03:48] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:03:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:03:49] 2.13.3.0 11235 35110 200864 153505 0 716 32142746 32935936 45302 16776704 0 284603177 99.586 286310730 33057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 00:03:49] CVMFS is ok
[2025-12-01 00:03:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:03:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:03:49] Further information can be found at the LHC@home message board.
[2025-12-01 00:03:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:03:49] Checking for apptainer binary...
[2025-12-01 00:03:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:03:49] Running /usr/bin/apptainer --version
[2025-12-01 00:03:49] apptainer version 1.4.4-1.el9
[2025-12-01 00:03:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:03:49] c7-2-37.aglt2.org
[2025-12-01 00:03:49] apptainer works
[2025-12-01 00:03:49] Set ATHENA_PROC_NUMBER=9
[2025-12-01 00:03:49] Set ATHENA_CORE_NUMBER=9
[2025-12-01 00:03:49] Starting ATLAS job with PandaID=6897834904
[2025-12-01 00:03:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:13 (3286295): BOINC client no longer exists - exiting
00:20:13 (3286295): timer handler: client dead, exiting
00:28:41 (3681454): wrapper (7.7.26015): starting
00:28:41 (3681454): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 00:28:42] Arguments: --nthreads 9
[2025-12-01 00:28:42] Threads: 9
[2025-12-01 00:28:42] This job has been restarted, cleaning up previous attempt
[2025-12-01 00:28:42] Checking for CVMFS
[2025-12-01 00:28:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:28:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:28:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:28:42] 2.13.3.0 11235 35135 190844 153507 0 640 32480188 32935936 36191 16776704 0 285029500 99.586 286442225 33060 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 00:28:42] CVMFS is ok
[2025-12-01 00:28:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:28:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:28:42] Further information can be found at the LHC@home message board.
[2025-12-01 00:28:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:28:42] Checking for apptainer binary...
[2025-12-01 00:28:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:28:42] Running /usr/bin/apptainer --version
[2025-12-01 00:28:42] apptainer version 1.4.4-1.el9
[2025-12-01 00:28:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:28:43] c7-2-37.aglt2.org
[2025-12-01 00:28:43] apptainer works
[2025-12-01 00:28:43] Set ATHENA_PROC_NUMBER=9
[2025-12-01 00:28:43] Set ATHENA_CORE_NUMBER=9
[2025-12-01 00:28:43] Starting ATLAS job with PandaID=6897834904
[2025-12-01 00:28:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 16:40:55]  *** The last 200 lines of the pilot log: ***
[2025-12-02 16:40:55] 2025-12-02 21:39:45,323 | INFO     | sum of deviations: 17391706115647.61
[2025-12-02 16:40:55] 2025-12-02 21:39:45,323 | INFO     | mean x: 1764639257.994093
[2025-12-02 16:40:55] 2025-12-02 21:39:45,328 | INFO     | mean y: 3536749.400843882
[2025-12-02 16:40:55] 2025-12-02 21:39:45,328 | INFO     | intersect: -7432047066.78777
[2025-12-02 16:40:55] 2025-12-02 21:39:45,334 | INFO     | chi2: 10.789293728562402
[2025-12-02 16:40:55] 2025-12-02 21:39:45,336 | INFO     | sum of square deviations: 4101395139409.1704
[2025-12-02 16:40:55] 2025-12-02 21:39:45,444 | INFO     | monitor loop #6145: job 0:6897834904 is in state 'finished'
[2025-12-02 16:40:55] 2025-12-02 21:39:45,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:40:55] 2025-12-02 21:39:45,684 | INFO     | sum of deviations: 18433447367864.98
[2025-12-02 16:40:55] 2025-12-02 21:39:45,684 | INFO     | mean x: 1764639105.5057082
[2025-12-02 16:40:55] 2025-12-02 21:39:45,684 | INFO     | mean y: 3542844.0359408036
[2025-12-02 16:40:55] 2025-12-02 21:39:45,684 | INFO     | intersect: -7927510119.395842
[2025-12-02 16:40:55] 2025-12-02 21:39:45,691 | INFO     | chi2: 7.2722655113960295
[2025-12-02 16:40:55] 2025-12-02 21:39:45,691 | INFO     | current chi2=7.2722655113960295 (change=32.597390576695254 %)
[2025-12-02 16:40:55] 2025-12-02 21:39:45,693 | INFO     | sum of square deviations: 4075438442325.3213
[2025-12-02 16:40:55] 2025-12-02 21:39:45,991 | INFO     | sum of deviations: 19305992516618.29
[2025-12-02 16:40:55] 2025-12-02 21:39:45,991 | INFO     | mean x: 1764638953.0169492
[2025-12-02 16:40:55] 2025-12-02 21:39:45,992 | INFO     | mean y: 3547968.51779661
[2025-12-02 16:40:55] 2025-12-02 21:39:45,992 | INFO     | intersect: -8355824134.288429
[2025-12-02 16:40:55] 2025-12-02 21:39:45,993 | INFO     | chi2: 4.518092132377269
[2025-12-02 16:40:55] 2025-12-02 21:39:45,998 | INFO     | current chi2=4.518092132377269 (change=37.8722885557853 %)
[2025-12-02 16:40:55] 2025-12-02 21:39:45,999 | INFO     | sum of square deviations: 4049590220263.344
[2025-12-02 16:40:55] 2025-12-02 21:39:46,496 | INFO     | time since job start (144644s) is within the limit (172800.0s)
[2025-12-02 16:40:55] 2025-12-02 21:39:47,000 | INFO     | sum of deviations: 19498357316586.953
[2025-12-02 16:40:55] 2025-12-02 21:39:47,000 | INFO     | mean x: 1764638800.5244162
[2025-12-02 16:40:55] 2025-12-02 21:39:47,000 | INFO     | mean y: 3549101.652653928
[2025-12-02 16:40:55] 2025-12-02 21:39:47,000 | INFO     | intersect: -8493003881.701043
[2025-12-02 16:40:55] 2025-12-02 21:39:47,002 | INFO     | chi2: 4.093746257583798
[2025-12-02 16:40:55] 2025-12-02 21:39:47,002 | INFO     | current chi2=4.093746257583798 (change=9.392147445434995 %)
[2025-12-02 16:40:55] 2025-12-02 21:39:47,002 | INFO     | right removable region: 2354
[2025-12-02 16:40:55] 2025-12-02 21:39:47,019 | INFO     | sum of square deviations: 4101387196599.17
[2025-12-02 16:40:55] 2025-12-02 21:39:47,421 | INFO     | sum of deviations: 16368426280665.092
[2025-12-02 16:40:55] 2025-12-02 21:39:47,422 | INFO     | mean x: 1764639410.5057082
[2025-12-02 16:40:55] 2025-12-02 21:39:47,422 | INFO     | mean y: 3542733.4723044396
[2025-12-02 16:40:55] 2025-12-02 21:39:47,422 | INFO     | intersect: -7039042791.437324
[2025-12-02 16:40:55] 2025-12-02 21:39:47,423 | INFO     | chi2: 7.63688625976118
[2025-12-02 16:40:55] 2025-12-02 21:39:47,424 | INFO     | current chi2=7.63688625976118 (change=29.21792239705071 %)
[2025-12-02 16:40:55] 2025-12-02 21:39:47,434 | INFO     | sum of square deviations: 4075424286733.6177
[2025-12-02 16:40:55] 2025-12-02 21:39:47,751 | INFO     | sum of deviations: 15928424353056.465
[2025-12-02 16:40:55] 2025-12-02 21:39:47,752 | INFO     | mean x: 1764639563.0127118
[2025-12-02 16:40:55] 2025-12-02 21:39:47,752 | INFO     | mean y: 3545316.75
[2025-12-02 16:40:55] 2025-12-02 21:39:47,752 | INFO     | intersect: -6893387569.810043
[2025-12-02 16:40:55] 2025-12-02 21:39:47,753 | INFO     | chi2: 7.085941378492083
[2025-12-02 16:40:55] 2025-12-02 21:39:47,754 | INFO     | current chi2=7.085941378492083 (change=7.214260662385801 %)
[2025-12-02 16:40:55] 2025-12-02 21:39:47,754 | INFO     | left removable region: 20
[2025-12-02 16:40:55] 2025-12-02 21:39:47,768 | INFO     | sum of square deviations: 3942199563141.599
[2025-12-02 16:40:55] 2025-12-02 21:39:47,885 | INFO     | sum of deviations: 17523320737663.91
[2025-12-02 16:40:55] 2025-12-02 21:39:47,885 | INFO     | mean x: 1764639380.0599828
[2025-12-02 16:40:55] 2025-12-02 21:39:47,885 | INFO     | mean y: 3560588.2292202227
[2025-12-02 16:40:55] 2025-12-02 21:39:47,885 | INFO     | intersect: -7840370533.933706
[2025-12-02 16:40:55] 2025-12-02 21:39:47,887 | INFO     | chi2: 0.22780570935932623
[2025-12-02 16:40:55] 2025-12-02 21:39:47,887 | INFO     | current memory leak: 4.45 B/s (using 2334 data points, chi2=0.23)
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | could have reported an average CPU frequency of 3294 MHz (82 samples)
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | ..............................
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . Timing measurements:
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . get job = 0 s
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . initial setup = 1 s
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . payload setup = 21 s
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . stage-in = 0 s
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . payload execution = 144570 s
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . stage-out = 7 s
[2025-12-02 16:40:55] 2025-12-02 21:39:47,891 | INFO     | . log creation = 2 s
[2025-12-02 16:40:55] 2025-12-02 21:39:47,892 | INFO     | ..............................
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | 
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | job summary report
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | --------------------------------------------------
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | PanDA job id: 6897834904
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | task id: 47530783
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | errors: (none)
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | pilot state: finished 
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | transexitcode: 0
[2025-12-02 16:40:55] 2025-12-02 21:39:48,441 | INFO     | exeerrorcode: 0
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | exeerrordiag: 
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | exitcode: 0
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | exitmsg: OK
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | cpuconsumptiontime: 165844 s
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | nevents: 1000
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | neventsw: 0
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | pid: 3794049
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | pgrp: 3794049
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | corecount: 9
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | event service: False
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | sizes: {0: 2283622, 1: 2284478, 9: 2284740, 12: 2284768, 144596: 2390949, 144605: 2399943, 144609: 2400127, 144626: 2400373}
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | --------------------------------------------------
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | 
[2025-12-02 16:40:55] 2025-12-02 21:39:48,442 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-12-02 16:40:55] 2025-12-02 21:39:48,549 | INFO     | time since job start (144646s) is within the limit (172800.0s)
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,623 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 16:40:55] 2025-12-02 21:39:48,629 | INFO     | job 6897834904 has completed (purged errors)
[2025-12-02 16:40:55] 2025-12-02 21:39:48,629 | INFO     | overall cleanup function is called
[2025-12-02 16:40:55] 2025-12-02 21:39:49,679 | INFO     | --- collectZombieJob: --- 10, [3794049]
[2025-12-02 16:40:55] 2025-12-02 21:39:49,679 | INFO     | zombie collector waiting for pid 3794049
[2025-12-02 16:40:55] 2025-12-02 21:39:49,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 16:40:55] 2025-12-02 21:39:49,679 | INFO     | collected zombie processes
[2025-12-02 16:40:55] 2025-12-02 21:39:49,679 | INFO     | will attempt to kill all subprocesses of pid=3794049
[2025-12-02 16:40:55] 2025-12-02 21:39:53,089 | INFO     | process IDs to be killed: [3794049] (in reverse order)
[2025-12-02 16:40:55] 2025-12-02 21:39:53,381 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 16:40:55] 2025-12-02 21:39:53,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 16:40:55] 2025-12-02 21:39:53,438 | INFO     | did not find any defunct processes belonging to 3794049
[2025-12-02 16:40:55] 2025-12-02 21:39:54,092 | INFO     | did not find any defunct processes belonging to 3794049
[2025-12-02 16:40:55] 2025-12-02 21:39:54,113 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 16:40:55] 2025-12-02 21:39:54,113 | INFO     | ready for new job
[2025-12-02 16:40:55] 2025-12-02 21:39:54,113 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 16:40:55] 2025-12-02 21:39:54,162 | INFO     | ***************************************
[2025-12-02 16:40:55] 2025-12-02 21:39:54,162 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 16:40:55] 2025-12-02 21:39:54,162 | INFO     | ***************************************
[2025-12-02 16:40:55] 2025-12-02 21:39:54,162 | INFO     | 
[2025-12-02 16:40:55] 2025-12-02 21:39:54,192 | INFO     | architecture information:
[2025-12-02 16:40:55] 2025-12-02 21:39:54,194 | INFO     | executing command: cat /etc/os-release
[2025-12-02 16:40:55] 2025-12-02 21:39:54,303 | INFO     | cat /etc/os-release:
[2025-12-02 16:40:55] NAME="CentOS Linux"
[2025-12-02 16:40:55] VERSION="7 (Core)"
[2025-12-02 16:40:55] ID="centos"
[2025-12-02 16:40:55] ID_LIKE="rhel fedora"
[2025-12-02 16:40:55] VERSION_ID="7"
[2025-12-02 16:40:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 16:40:55] ANSI_COLOR="0;31"
[2025-12-02 16:40:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 16:40:55] HOME_URL="https://www.centos.org/"
[2025-12-02 16:40:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 16:40:55] 
[2025-12-02 16:40:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 16:40:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 16:40:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 16:40:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 16:40:55] 
[2025-12-02 16:40:55] 2025-12-02 21:39:54,303 | INFO     | ***************************************
[2025-12-02 16:40:55] 2025-12-02 21:39:54,806 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-12-02 16:40:55] 2025-12-02 21:39:54,881 | INFO     | sufficient remaining disk space (70811385856 B)
[2025-12-02 16:40:55] 2025-12-02 21:39:54,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 16:40:55] 2025-12-02 21:39:54,882 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 16:40:55] 2025-12-02 21:39:54,882 | INFO     | update_server=False
[2025-12-02 16:40:55] 2025-12-02 21:39:54,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 16:40:55] 2025-12-02 21:39:54,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:40:55] 2025-12-02 21:39:54,898 | INFO     | aborting loop
[2025-12-02 16:40:55] 2025-12-02 21:39:55,083 | INFO     | all data control threads have been joined
[2025-12-02 16:40:55] 2025-12-02 21:39:55,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 16:40:55] 2025-12-02 21:39:55,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 16:40:55] 2025-12-02 21:39:55,513 | INFO     | all payload control threads have been joined
[2025-12-02 16:40:55] 2025-12-02 21:39:55,717 | INFO     | all job control threads have been joined
[2025-12-02 16:40:55] 2025-12-02 21:39:55,903 | INFO     | [job] retrieve thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:55,904 | INFO     | [job] job monitor thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,089 | INFO     | [data] control thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,459 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,520 | INFO     | [payload] control thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,605 | INFO     | [job] validate thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,740 | INFO     | [job] control thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,847 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,847 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:56,859 | INFO     | [data] copytool_in thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:57,120 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:57,154 | INFO     | [payload] failed_post thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:57,167 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:40:55] 2025-12-02 21:39:57,356 | INFO     | [data] copytool_out thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:57,432 | INFO     | [payload] validate_post thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:58,176 | INFO     | [job] queue monitor thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:39:59,462 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 16:40:55] 2025-12-02 21:40:23,948 | INFO     | PID=3717490 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 16:40:55] 2025-12-02 21:40:23,948 | INFO     | .. there are 76 such processes running
[2025-12-02 16:40:55] 2025-12-02 21:40:23,949 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 16:40:55] 2025-12-02 21:40:23,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 16:40:55] 2025-12-02 21:40:23,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 16:40:55] 2025-12-02 21:40:48,583 | INFO     | [monitor] cgroup control has ended
[2025-12-02 16:40:55] 2025-12-02 21:40:49,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664526169920)>', '<ExcThread(monitor, started 139664182720256)>']
[2025-12-02 16:40:55] 2025-12-02 21:40:50,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 16:40:55] 2025-12-02 21:40:50,178 | INFO     | [monitor] control thread has ended
[2025-12-02 16:40:55] 2025-12-02 21:40:54,404 | INFO     | all workflow threads have been joined
[2025-12-02 16:40:55] 2025-12-02 21:40:54,406 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 16:40:55] 2025-12-02 21:40:54,407 | INFO     | traces error code: 0
[2025-12-02 16:40:55] 2025-12-02 21:40:54,407 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 16:40:55] 2025-12-02 21:40:54,582 [wrapper] ==== pilot stdout END ====
[2025-12-02 16:40:55] 2025-12-02 21:40:54,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 16:40:55] 2025-12-02 21:40:54,597 [wrapper] pilotpid: 3717490
[2025-12-02 16:40:55] 2025-12-02 21:40:54,599 [wrapper] Pilot exit status: 0
[2025-12-02 16:40:55] 2025-12-02 21:40:54,624 [wrapper] pandaids: 6897834904 6897834904
[2025-12-02 16:40:55] 2025-12-02 21:40:54,774 [wrapper] cleanup supervisor_pilot  206521 3717491
[2025-12-02 16:40:55] 2025-12-02 21:40:54,784 [wrapper] Test setup, not cleaning
[2025-12-02 16:40:55] 2025-12-02 21:40:54,799 [wrapper] apfmon messages muted
[2025-12-02 16:40:55] 2025-12-02 21:40:54,802 [wrapper] ==== wrapper stdout END ====
[2025-12-02 16:40:55] 2025-12-02 21:40:54,804 [wrapper] ==== wrapper stderr END ====
[2025-12-02 16:40:55]  *** Error codes and diagnostics ***
[2025-12-02 16:40:55]     "exeErrorCode": 0,
[2025-12-02 16:40:55]     "exeErrorDiag": "",
[2025-12-02 16:40:55]     "pilotErrorCode": 0,
[2025-12-02 16:40:55]     "pilotErrorDiag": "",
[2025-12-02 16:40:55]  *** Listing of results directory ***
[2025-12-02 16:40:55] total 1453004
[2025-12-02 16:40:55] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-02 16:40:55] -rwx------. 1 boincer umatlas     36292 Nov 28 17:46 runpilot2-wrapper.sh
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 17:49 queuedata.json
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas       100 Dec  1 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 16:40:55] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  1 00:03 run_atlas
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas       105 Dec  1 00:03 job.xml
[2025-12-02 16:40:55] -rw-r--r--. 3 boincer umatlas 376400413 Dec  1 00:03 EVNT.47530775._000044.pool.root.1
[2025-12-02 16:40:55] -rw-r--r--. 3 boincer umatlas 376400413 Dec  1 00:03 ATLAS.root_0
[2025-12-02 16:40:55] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:03 start_atlas.sh
[2025-12-02 16:40:55] drwxrwx--x. 2 boincer umatlas      4096 Dec  1 00:03 shared
[2025-12-02 16:40:55] -rw-r--r--. 2 boincer umatlas    590123 Dec  1 00:03 input.tar.gz
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas         0 Dec  1 00:03 boinc_lockfile
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas      2879 Dec  1 00:28 pandaJob.out
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas        57 Dec  1 00:28 setup.sh.local
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas    992521 Dec  1 00:29 agis_schedconf.cvmfs.json
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas       533 Dec  2 16:25 boinc_task_state.xml
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas 695233572 Dec  2 16:38 HITS.47530783._000437.pool.root.1
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas      1062 Dec  2 16:39 memory_monitor_summary.json
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas   1516240 Dec  2 16:39 agis_ddmendpoints.agis.ALL.json
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas   3087579 Dec  2 16:39 log.47530783._000437.job.log.tgz.1
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas     27744 Dec  2 16:39 heartbeat.json
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas        96 Dec  2 16:40 pilot_heartbeat.json
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas      6946 Dec  2 16:40 init_data.xml
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 16:40 boinc_mmap_file
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas      4824 Dec  2 16:40 pilotlog.txt
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas        29 Dec  2 16:40 wrapper_checkpoint.txt
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas  14850048 Dec  2 16:40 log.47530783._000437.job.log.1
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas       353 Dec  2 16:40 output.list
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas       620 Dec  2 16:40 runtime_log
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas  17981440 Dec  2 16:40 result.tar.gz
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas      9424 Dec  2 16:40 runtime_log.err
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas       793 Dec  2 16:40 iDgNDmPPMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHtOKDm3AJkqm.diag
[2025-12-02 16:40:55] -rw-r--r--. 1 boincer umatlas     23266 Dec  2 16:40 stderr.txt
[2025-12-02 16:40:55] HITS file was successfully produced:
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas 695233572 Dec  2 16:38 shared/HITS.pool.root.1
[2025-12-02 16:40:55]  *** Contents of shared directory: ***
[2025-12-02 16:40:55] total 1064684
[2025-12-02 16:40:55] -rw-r--r--. 3 boincer umatlas 376400413 Dec  1 00:03 ATLAS.root_0
[2025-12-02 16:40:55] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:03 start_atlas.sh
[2025-12-02 16:40:55] -rw-r--r--. 2 boincer umatlas    590123 Dec  1 00:03 input.tar.gz
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas 695233572 Dec  2 16:38 HITS.pool.root.1
[2025-12-02 16:40:55] -rw-------. 1 boincer umatlas  17981440 Dec  2 16:40 result.tar.gz
16:40:56 (3681454): run_atlas exited; CPU time 168803.443197
16:40:56 (3681454): called boinc_finish(0)

</stderr_txt>
]]>

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