Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:03:41 (13614): wrapper (7.7.26015): starting
23:03:41 (13614): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 23:03:41] Arguments: --nthreads 12
[2025-11-30 23:03:41] Threads: 12
[2025-11-30 23:03:41] Checking for CVMFS
[2025-11-30 23:03:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 23:03:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 23:03:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 23:03:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 23:03:41] 2.11.2.0 10903 12842 92592 153503 3 59 13059598 20275200 1 130560 0 5628574 99.769 1600950 41188 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 23:03:41] CVMFS is ok
[2025-11-30 23:03:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 23:03:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 23:03:41] Further information can be found at the LHC@home message board.
[2025-11-30 23:03:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 23:03:41] Checking for apptainer binary...
[2025-11-30 23:03:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 23:03:41] Running /usr/bin/apptainer --version
[2025-11-30 23:03:41] apptainer version 1.3.2-1.el7
[2025-11-30 23:03:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 23:03:43] c-205-22.aglt2.org
[2025-11-30 23:03:43] apptainer works
[2025-11-30 23:03:43] Set ATHENA_PROC_NUMBER=12
[2025-11-30 23:03:43] Set ATHENA_CORE_NUMBER=12
[2025-11-30 23:03:43] Starting ATLAS job with PandaID=6897957512
[2025-11-30 23:03:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 05:24:41]  *** The last 200 lines of the pilot log: ***
[2025-12-01 05:24:41] 2025-12-01 10:23:40,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,878 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 05:24:41] 2025-12-01 10:23:40,882 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-01 05:24:41] 2025-12-01 10:23:40,884 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897957512/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,885 | INFO     | extracted standard info from prmon json
[2025-12-01 05:24:41] 2025-12-01 10:23:40,886 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 05:24:41] 2025-12-01 10:23:40,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 05:24:41] 2025-12-01 10:23:40,892 | INFO     | fitting pss+swap vs Time
[2025-12-01 05:24:41] 2025-12-01 10:23:40,892 | INFO     | sum of square deviations: 16091654000.92222
[2025-12-01 05:24:41] 2025-12-01 10:23:40,895 | INFO     | sum of deviations: 339176113848.4927
[2025-12-01 05:24:41] 2025-12-01 10:23:40,896 | INFO     | mean x: 1764573219.1045578
[2025-12-01 05:24:41] 2025-12-01 10:23:40,896 | INFO     | mean y: 4008535.474530831
[2025-12-01 05:24:41] 2025-12-01 10:23:40,896 | INFO     | intersect: -37189252457.006935
[2025-12-01 05:24:41] 2025-12-01 10:23:40,896 | INFO     | chi2: 5.5088413351860375
[2025-12-01 05:24:41] 2025-12-01 10:23:40,897 | INFO     | sum of square deviations: 15453179505.866852
[2025-12-01 05:24:41] 2025-12-01 10:23:40,900 | INFO     | sum of deviations: 494850120888.63306
[2025-12-01 05:24:41] 2025-12-01 10:23:40,900 | INFO     | mean x: 1764573066.6059783
[2025-12-01 05:24:41] 2025-12-01 10:23:40,900 | INFO     | mean y: 4045662.8940217393
[2025-12-01 05:24:41] 2025-12-01 10:23:40,900 | INFO     | intersect: -56502073029.07363
[2025-12-01 05:24:41] 2025-12-01 10:23:40,901 | INFO     | chi2: 2.8518608044857485
[2025-12-01 05:24:41] 2025-12-01 10:23:40,901 | INFO     | current chi2=2.8518608044857485 (change=48.23120451354515 %)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,901 | INFO     | sum of square deviations: 14831821610.810019
[2025-12-01 05:24:41] 2025-12-01 10:23:40,904 | INFO     | sum of deviations: 521030142101.42957
[2025-12-01 05:24:41] 2025-12-01 10:23:40,904 | INFO     | mean x: 1764572914.107438
[2025-12-01 05:24:41] 2025-12-01 10:23:40,905 | INFO     | mean y: 4052037.988980716
[2025-12-01 05:24:41] 2025-12-01 10:23:40,905 | INFO     | intersect: -61983996383.2272
[2025-12-01 05:24:41] 2025-12-01 10:23:40,905 | INFO     | chi2: 2.6278854400325082
[2025-12-01 05:24:41] 2025-12-01 10:23:40,905 | INFO     | current chi2=2.6278854400325082 (change=7.8536569562211795 %)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,905 | INFO     | right removable region: 362
[2025-12-01 05:24:41] 2025-12-01 10:23:40,906 | INFO     | sum of square deviations: 15453155715.866856
[2025-12-01 05:24:41] 2025-12-01 10:23:40,909 | INFO     | sum of deviations: 187889256711.19275
[2025-12-01 05:24:41] 2025-12-01 10:23:40,909 | INFO     | mean x: 1764573371.6059783
[2025-12-01 05:24:41] 2025-12-01 10:23:40,909 | INFO     | mean y: 4044562.366847826
[2025-12-01 05:24:41] 2025-12-01 10:23:40,909 | INFO     | intersect: -21450756340.40218
[2025-12-01 05:24:41] 2025-12-01 10:23:40,910 | INFO     | chi2: 3.025949684264088
[2025-12-01 05:24:41] 2025-12-01 10:23:40,910 | INFO     | current chi2=3.025949684264088 (change=45.071032179911214 %)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,910 | INFO     | sum of square deviations: 14831774030.810019
[2025-12-01 05:24:41] 2025-12-01 10:23:40,913 | INFO     | sum of deviations: 158064414013.47897
[2025-12-01 05:24:41] 2025-12-01 10:23:40,913 | INFO     | mean x: 1764573524.107438
[2025-12-01 05:24:41] 2025-12-01 10:23:40,913 | INFO     | mean y: 4051869.859504132
[2025-12-01 05:24:41] 2025-12-01 10:23:40,914 | INFO     | intersect: -18801269698.03584
[2025-12-01 05:24:41] 2025-12-01 10:23:40,914 | INFO     | chi2: 2.982684397273353
[2025-12-01 05:24:41] 2025-12-01 10:23:40,914 | INFO     | current chi2=2.982684397273353 (change=1.4298085396372595 %)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,914 | INFO     | left removable region: 20
[2025-12-01 05:24:41] 2025-12-01 10:23:40,915 | INFO     | sum of square deviations: 12403709503.277788
[2025-12-01 05:24:41] 2025-12-01 10:23:40,917 | INFO     | sum of deviations: 290458054894.00006
[2025-12-01 05:24:41] 2025-12-01 10:23:40,917 | INFO     | mean x: 1764573493.6111112
[2025-12-01 05:24:41] 2025-12-01 10:23:40,917 | INFO     | mean y: 4110163.4210526315
[2025-12-01 05:24:41] 2025-12-01 10:23:40,918 | INFO     | intersect: -41316962741.12834
[2025-12-01 05:24:41] 2025-12-01 10:23:40,918 | INFO     | chi2: 0.03790523800076857
[2025-12-01 05:24:41] 2025-12-01 10:23:40,918 | INFO     | current memory leak: 23.42 B/s (using 342 data points, chi2=0.04)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | could have reported an average CPU frequency of 2339 MHz (16 samples)
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | ..............................
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | . Timing measurements:
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | . get job = 0 s
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | . initial setup = 2 s
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | . payload setup = 13 s
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | . stage-in = 0 s
[2025-12-01 05:24:41] 2025-12-01 10:23:40,919 | INFO     | . payload execution = 22741 s
[2025-12-01 05:24:41] 2025-12-01 10:23:40,920 | INFO     | . stage-out = 3 s
[2025-12-01 05:24:41] 2025-12-01 10:23:40,920 | INFO     | . log creation = 0 s
[2025-12-01 05:24:41] 2025-12-01 10:23:40,920 | INFO     | ..............................
[2025-12-01 05:24:41] 2025-12-01 10:23:41,149 | INFO     | 
[2025-12-01 05:24:41] 2025-12-01 10:23:41,149 | INFO     | job summary report
[2025-12-01 05:24:41] 2025-12-01 10:23:41,150 | INFO     | --------------------------------------------------
[2025-12-01 05:24:41] 2025-12-01 10:23:41,150 | INFO     | PanDA job id: 6897957512
[2025-12-01 05:24:41] 2025-12-01 10:23:41,150 | INFO     | task id: 47538121
[2025-12-01 05:24:41] 2025-12-01 10:23:41,150 | INFO     | errors: (none)
[2025-12-01 05:24:41] 2025-12-01 10:23:41,150 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 05:24:41] 2025-12-01 10:23:41,150 | INFO     | pilot state: finished 
[2025-12-01 05:24:41] 2025-12-01 10:23:41,151 | INFO     | transexitcode: 0
[2025-12-01 05:24:41] 2025-12-01 10:23:41,151 | INFO     | exeerrorcode: 0
[2025-12-01 05:24:41] 2025-12-01 10:23:41,151 | INFO     | exeerrordiag: 
[2025-12-01 05:24:41] 2025-12-01 10:23:41,151 | INFO     | exitcode: 0
[2025-12-01 05:24:41] 2025-12-01 10:23:41,151 | INFO     | exitmsg: OK
[2025-12-01 05:24:41] 2025-12-01 10:23:41,151 | INFO     | cpuconsumptiontime: 258551 s
[2025-12-01 05:24:41] 2025-12-01 10:23:41,152 | INFO     | nevents: 1000
[2025-12-01 05:24:41] 2025-12-01 10:23:41,152 | INFO     | neventsw: 0
[2025-12-01 05:24:41] 2025-12-01 10:23:41,152 | INFO     | pid: 24696
[2025-12-01 05:24:41] 2025-12-01 10:23:41,152 | INFO     | pgrp: 24696
[2025-12-01 05:24:41] 2025-12-01 10:23:41,152 | INFO     | corecount: 12
[2025-12-01 05:24:41] 2025-12-01 10:23:41,152 | INFO     | event service: False
[2025-12-01 05:24:41] 2025-12-01 10:23:41,153 | INFO     | sizes: {0: 2284223, 1: 2284478, 6: 2284740, 12: 2284768, 22758: 2339685, 22759: 2339684, 22762: 2348918, 22767: 2349108}
[2025-12-01 05:24:41] 2025-12-01 10:23:41,153 | INFO     | --------------------------------------------------
[2025-12-01 05:24:41] 2025-12-01 10:23:41,153 | INFO     | 
[2025-12-01 05:24:41] 2025-12-01 10:23:41,153 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 05:24:41] 2025-12-01 10:23:41,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,178 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,179 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,179 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,179 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,179 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,179 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,179 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,180 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 05:24:41] 2025-12-01 10:23:41,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,180 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 05:24:41] 2025-12-01 10:23:41,181 | INFO     | job 6897957512 has completed (purged errors)
[2025-12-01 05:24:41] 2025-12-01 10:23:41,181 | INFO     | overall cleanup function is called
[2025-12-01 05:24:41] 2025-12-01 10:23:42,194 | INFO     | --- collectZombieJob: --- 10, [24696]
[2025-12-01 05:24:41] 2025-12-01 10:23:42,195 | INFO     | zombie collector waiting for pid 24696
[2025-12-01 05:24:41] 2025-12-01 10:23:42,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 05:24:41] 2025-12-01 10:23:42,195 | INFO     | collected zombie processes
[2025-12-01 05:24:41] 2025-12-01 10:23:42,195 | INFO     | will attempt to kill all subprocesses of pid=24696
[2025-12-01 05:24:41] 2025-12-01 10:23:42,288 | INFO     | process IDs to be killed: [24696] (in reverse order)
[2025-12-01 05:24:41] 2025-12-01 10:23:42,337 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 05:24:41] 2025-12-01 10:23:42,337 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 05:24:41] 2025-12-01 10:23:42,340 | INFO     | did not find any defunct processes belonging to 24696
[2025-12-01 05:24:41] 2025-12-01 10:23:42,344 | INFO     | did not find any defunct processes belonging to 24696
[2025-12-01 05:24:41] 2025-12-01 10:23:42,346 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 05:24:41] 2025-12-01 10:23:42,346 | INFO     | ready for new job
[2025-12-01 05:24:41] 2025-12-01 10:23:42,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 05:24:41] 2025-12-01 10:23:42,348 | INFO     | ***************************************
[2025-12-01 05:24:41] 2025-12-01 10:23:42,348 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 05:24:41] 2025-12-01 10:23:42,348 | INFO     | ***************************************
[2025-12-01 05:24:41] 2025-12-01 10:23:42,348 | INFO     | 
[2025-12-01 05:24:41] 2025-12-01 10:23:42,349 | INFO     | architecture information:
[2025-12-01 05:24:41] 2025-12-01 10:23:42,349 | INFO     | executing command: cat /etc/os-release
[2025-12-01 05:24:41] 2025-12-01 10:23:42,366 | INFO     | cat /etc/os-release:
[2025-12-01 05:24:41] NAME="CentOS Linux"
[2025-12-01 05:24:41] VERSION="7 (Core)"
[2025-12-01 05:24:41] ID="centos"
[2025-12-01 05:24:41] ID_LIKE="rhel fedora"
[2025-12-01 05:24:41] VERSION_ID="7"
[2025-12-01 05:24:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 05:24:41] ANSI_COLOR="0;31"
[2025-12-01 05:24:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 05:24:41] HOME_URL="https://www.centos.org/"
[2025-12-01 05:24:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 05:24:41] 
[2025-12-01 05:24:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 05:24:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 05:24:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 05:24:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 05:24:41] 
[2025-12-01 05:24:41] 2025-12-01 10:23:42,366 | INFO     | ***************************************
[2025-12-01 05:24:41] 2025-12-01 10:23:42,869 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 05:24:41] 2025-12-01 10:23:42,885 | INFO     | sufficient remaining disk space (28520218624 B)
[2025-12-01 05:24:41] 2025-12-01 10:23:42,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 05:24:41] 2025-12-01 10:23:42,885 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 05:24:41] 2025-12-01 10:23:42,885 | INFO     | update_server=False
[2025-12-01 05:24:41] 2025-12-01 10:23:42,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 05:24:41] 2025-12-01 10:23:42,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:24:41] 2025-12-01 10:23:42,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 05:24:41] 2025-12-01 10:23:42,917 | INFO     | all payload control threads have been joined
[2025-12-01 05:24:41] 2025-12-01 10:23:42,967 | INFO     | all data control threads have been joined
[2025-12-01 05:24:41] 2025-12-01 10:23:43,158 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 05:24:41] 2025-12-01 10:23:43,158 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 05:24:41] 2025-12-01 10:23:43,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:24:41] 2025-12-01 10:23:43,159 | INFO     | will abort loop
[2025-12-01 05:24:41] 2025-12-01 10:23:43,891 | INFO     | [job] retrieve thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:43,891 | INFO     | [job] queue monitor thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:43,894 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:43,923 | INFO     | [payload] control thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:43,972 | INFO     | [data] control thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:43,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 05:24:41] 2025-12-01 10:23:44,141 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:44,149 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:44,164 | INFO     | [job] job monitor thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:44,183 | INFO     | all job control threads have been joined
[2025-12-01 05:24:41] 2025-12-01 10:23:44,403 | INFO     | [data] copytool_in thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:44,675 | INFO     | [payload] validate_post thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:44,929 | INFO     | [job] validate thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:45,188 | INFO     | [job] control thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:45,378 | INFO     | [payload] failed_post thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:46,000 | INFO     | [data] copytool_out thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:46,892 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:23:52,993 | INFO     | job.realtimelogging is not enabled
[2025-12-01 05:24:41] 2025-12-01 10:23:53,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 05:24:41] 2025-12-01 10:24:12,854 | INFO     | PID=17611 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 05:24:41] 2025-12-01 10:24:12,855 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 05:24:41] 2025-12-01 10:24:12,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 05:24:41] 2025-12-01 10:24:12,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 05:24:41] 2025-12-01 10:24:34,710 | INFO     | [monitor] cgroup control has ended
[2025-12-01 05:24:41] 2025-12-01 10:24:36,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140355123672896)>', '<ExcThread(monitor, started 140354078627584)>']
[2025-12-01 05:24:41] 2025-12-01 10:24:36,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 05:24:41] 2025-12-01 10:24:36,972 | INFO     | [monitor] control thread has ended
[2025-12-01 05:24:41] 2025-12-01 10:24:41,654 | INFO     | all workflow threads have been joined
[2025-12-01 05:24:41] 2025-12-01 10:24:41,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 05:24:41] 2025-12-01 10:24:41,654 | INFO     | traces error code: 0
[2025-12-01 05:24:41] 2025-12-01 10:24:41,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 05:24:41] 2025-12-01 10:24:41,736 [wrapper] ==== pilot stdout END ====
[2025-12-01 05:24:41] 2025-12-01 10:24:41,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 05:24:41] 2025-12-01 10:24:41,744 [wrapper] pilotpid: 17611
[2025-12-01 05:24:41] 2025-12-01 10:24:41,748 [wrapper] Pilot exit status: 0
[2025-12-01 05:24:41] 2025-12-01 10:24:41,763 [wrapper] pandaids: 6897957512
[2025-12-01 05:24:41] 2025-12-01 10:24:41,808 [wrapper] cleanup supervisor_pilot 26355 17612
[2025-12-01 05:24:41] 2025-12-01 10:24:41,812 [wrapper] Test setup, not cleaning
[2025-12-01 05:24:41] 2025-12-01 10:24:41,816 [wrapper] apfmon messages muted
[2025-12-01 05:24:41] 2025-12-01 10:24:41,820 [wrapper] ==== wrapper stdout END ====
[2025-12-01 05:24:41] 2025-12-01 10:24:41,824 [wrapper] ==== wrapper stderr END ====
[2025-12-01 05:24:41]  *** Error codes and diagnostics ***
[2025-12-01 05:24:41]     "exeErrorCode": 0,
[2025-12-01 05:24:41]     "exeErrorDiag": "",
[2025-12-01 05:24:41]     "pilotErrorCode": 0,
[2025-12-01 05:24:41]     "pilotErrorDiag": "",
[2025-12-01 05:24:41]  *** Listing of results directory ***
[2025-12-01 05:24:41] total 1075896
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 17:43 queuedata.json
[2025-12-01 05:24:41] -rwx------ 1 boincer umatlas     36292 Nov 28 17:44 runpilot2-wrapper.sh
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas       100 Nov 30 23:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 05:24:41] -rwxr-xr-x 1 boincer umatlas      7986 Nov 30 23:03 run_atlas
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas       105 Nov 30 23:03 job.xml
[2025-12-01 05:24:41] -rw-r--r-- 2 boincer umatlas 379341680 Nov 30 23:03 EVNT.47528880._000067.pool.root.1
[2025-12-01 05:24:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 23:03 start_atlas.sh
[2025-12-01 05:24:41] drwxrwx--x 2 boincer umatlas      4096 Nov 30 23:03 shared
[2025-12-01 05:24:41] -rw-r--r-- 2 boincer umatlas    590129 Nov 30 23:03 input.tar.gz
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas         0 Nov 30 23:03 boinc_lockfile
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas      2879 Nov 30 23:03 pandaJob.out
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas        57 Nov 30 23:03 setup.sh.local
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas    993245 Nov 30 23:03 agis_schedconf.cvmfs.json
[2025-12-01 05:24:41] drwx------ 5 boincer umatlas      4096 Nov 30 23:03 pilot3
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas       532 Dec  1 05:14 boinc_task_state.xml
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas      5956 Dec  1 05:21 init_data.xml
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas 707539266 Dec  1 05:23 HITS.47538121._000668.pool.root.1
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas      1059 Dec  1 05:23 memory_monitor_summary.json
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas   1516240 Dec  1 05:23 agis_ddmendpoints.agis.ALL.json
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas   2231930 Dec  1 05:23 log.47538121._000668.job.log.tgz.1
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas     28003 Dec  1 05:23 heartbeat.json
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas        29 Dec  1 05:24 wrapper_checkpoint.txt
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 05:24 boinc_mmap_file
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas        95 Dec  1 05:24 pilot_heartbeat.json
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas      5004 Dec  1 05:24 pilotlog.txt
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas   3211067 Dec  1 05:24 log.47538121._000668.job.log.1
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas       353 Dec  1 05:24 output.list
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas       620 Dec  1 05:24 runtime_log
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas   5478400 Dec  1 05:24 result.tar.gz
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas      9345 Dec  1 05:24 runtime_log.err
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas       670 Dec  1 05:24 JE5MDmHNMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYXLKDmysjDUn.diag
[2025-12-01 05:24:41] -rw-r--r-- 1 boincer umatlas     21289 Dec  1 05:24 stderr.txt
[2025-12-01 05:24:41] HITS file was successfully produced:
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas 707539266 Dec  1 05:23 shared/HITS.pool.root.1
[2025-12-01 05:24:41]  *** Contents of shared directory: ***
[2025-12-01 05:24:41] total 1067364
[2025-12-01 05:24:41] -rw-r--r-- 2 boincer umatlas 379341680 Nov 30 23:03 ATLAS.root_0
[2025-12-01 05:24:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 23:03 start_atlas.sh
[2025-12-01 05:24:41] -rw-r--r-- 2 boincer umatlas    590129 Nov 30 23:03 input.tar.gz
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas 707539266 Dec  1 05:23 HITS.pool.root.1
[2025-12-01 05:24:41] -rw------- 1 boincer umatlas   5478400 Dec  1 05:24 result.tar.gz
05:24:43 (13614): run_atlas exited; CPU time 250507.696010
05:24:43 (13614): called boinc_finish(0)

</stderr_txt>
]]>

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