Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:54:27 (14481): wrapper (7.7.26015): starting
20:54:27 (14481): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 20:54:27] Arguments: --nthreads 12
[2025-11-30 20:54:27] Threads: 12
[2025-11-30 20:54:27] Checking for CVMFS
[2025-11-30 20:54:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 20:54:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 20:54:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 20:54:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 20:54:27] 2.11.2.0 10903 12712 92480 153500 0 82 11665373 20275200 1 130560 0 5539173 99.858 1141975 41832 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 20:54:27] CVMFS is ok
[2025-11-30 20:54:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 20:54:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 20:54:27] Further information can be found at the LHC@home message board.
[2025-11-30 20:54:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 20:54:27] Checking for apptainer binary...
[2025-11-30 20:54:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 20:54:27] Running /usr/bin/apptainer --version
[2025-11-30 20:54:27] apptainer version 1.3.2-1.el7
[2025-11-30 20:54:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 20:54:29] c-205-22.aglt2.org
[2025-11-30 20:54:29] apptainer works
[2025-11-30 20:54:29] Set ATHENA_PROC_NUMBER=12
[2025-11-30 20:54:29] Set ATHENA_CORE_NUMBER=12
[2025-11-30 20:54:29] Starting ATLAS job with PandaID=6900275232
[2025-11-30 20:54:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 23:03:03]  *** The last 200 lines of the pilot log: ***
[2025-11-30 23:03:03] 2025-12-01 04:02:20,916 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-30 23:03:03] 2025-12-01 04:02:20,918 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6900275232/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 23:03:03] 2025-12-01 04:02:20,918 | INFO     | extracted standard info from prmon json
[2025-11-30 23:03:03] 2025-12-01 04:02:20,918 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 23:03:03] 2025-12-01 04:02:20,919 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 23:03:03] 2025-12-01 04:02:20,919 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 23:03:03] 2025-12-01 04:02:20,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 23:03:03] 2025-12-01 04:02:20,922 | INFO     | fitting pss+swap vs Time
[2025-11-30 23:03:03] 2025-12-01 04:02:20,922 | INFO     | sum of square deviations: 605592750.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,923 | INFO     | sum of deviations: 14023350024.000002
[2025-11-30 23:03:03] 2025-12-01 04:02:20,923 | INFO     | mean x: 1764557896.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,923 | INFO     | mean y: 2732531.312
[2025-11-30 23:03:03] 2025-12-01 04:02:20,923 | INFO     | intersect: -40858081957.00708
[2025-11-30 23:03:03] 2025-12-01 04:02:20,923 | INFO     | chi2: 1.7245102227168134
[2025-11-30 23:03:03] 2025-12-01 04:02:20,924 | INFO     | sum of square deviations: 535786790.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,924 | INFO     | sum of deviations: 13399558533.999998
[2025-11-30 23:03:03] 2025-12-01 04:02:20,925 | INFO     | mean x: 1764557743.5
[2025-11-30 23:03:03] 2025-12-01 04:02:20,925 | INFO     | mean y: 2731171.533333333
[2025-11-30 23:03:03] 2025-12-01 04:02:20,925 | INFO     | intersect: -44127313114.6485
[2025-11-30 23:03:03] 2025-12-01 04:02:20,925 | INFO     | chi2: 1.7275797354945985
[2025-11-30 23:03:03] 2025-12-01 04:02:20,925 | INFO     | current chi2=1.7275797354945985 (change=-0.17799330716343129 %)
[2025-11-30 23:03:03] 2025-12-01 04:02:20,926 | INFO     | right removable region: 119
[2025-11-30 23:03:03] 2025-12-01 04:02:20,926 | INFO     | sum of square deviations: 535786790.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,926 | INFO     | sum of deviations: -9148196657.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,926 | INFO     | mean x: 1764558048.5
[2025-11-30 23:03:03] 2025-12-01 04:02:20,926 | INFO     | mean y: 2782379.75
[2025-11-30 23:03:03] 2025-12-01 04:02:20,927 | INFO     | intersect: 30131416272.29174
[2025-11-30 23:03:03] 2025-12-01 04:02:20,927 | INFO     | chi2: 0.09938497833563352
[2025-11-30 23:03:03] 2025-12-01 04:02:20,927 | INFO     | current chi2=0.09938497833563352 (change=94.23691567458144 %)
[2025-11-30 23:03:03] 2025-12-01 04:02:20,927 | INFO     | sum of square deviations: 471562330.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,928 | INFO     | sum of deviations: -9178922174.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,928 | INFO     | mean x: 1764558201.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,928 | INFO     | mean y: 2782264.9304347825
[2025-11-30 23:03:03] 2025-12-01 04:02:20,928 | INFO     | intersect: 34349763285.38737
[2025-11-30 23:03:03] 2025-12-01 04:02:20,928 | INFO     | chi2: 0.07131760010176755
[2025-11-30 23:03:03] 2025-12-01 04:02:20,928 | INFO     | current chi2=0.07131760010176755 (change=28.241066913633052 %)
[2025-11-30 23:03:03] 2025-12-01 04:02:20,929 | INFO     | sum of square deviations: 412686807.5
[2025-11-30 23:03:03] 2025-12-01 04:02:20,929 | INFO     | sum of deviations: -5626046287.000001
[2025-11-30 23:03:03] 2025-12-01 04:02:20,929 | INFO     | mean x: 1764558353.5
[2025-11-30 23:03:03] 2025-12-01 04:02:20,929 | INFO     | mean y: 2773040.1818181816
[2025-11-30 23:03:03] 2025-12-01 04:02:20,929 | INFO     | intersect: 24058514082.748367
[2025-11-30 23:03:03] 2025-12-01 04:02:20,930 | INFO     | chi2: 0.05775458286874938
[2025-11-30 23:03:03] 2025-12-01 04:02:20,930 | INFO     | current chi2=0.05775458286874938 (change=19.017770106767827 %)
[2025-11-30 23:03:03] 2025-12-01 04:02:20,930 | INFO     | left removable region: 30
[2025-11-30 23:03:03] 2025-12-01 04:02:20,930 | INFO     | sum of square deviations: 218571540.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,930 | INFO     | sum of deviations: 334155926.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,931 | INFO     | mean x: 1764558628.0
[2025-11-30 23:03:03] 2025-12-01 04:02:20,931 | INFO     | mean y: 2754701.595505618
[2025-11-30 23:03:03] 2025-12-01 04:02:20,931 | INFO     | intersect: -2694932848.7627406
[2025-11-30 23:03:03] 2025-12-01 04:02:20,931 | INFO     | chi2: 5.8548104255338164e-05
[2025-11-30 23:03:03] 2025-12-01 04:02:20,931 | INFO     | current memory leak: 1.53 B/s (using 89 data points, chi2=0.00)
[2025-11-30 23:03:03] 2025-12-01 04:02:20,931 | INFO     | could have reported an average CPU frequency of 2199 MHz (8 samples)
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | ..............................
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . Timing measurements:
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . get job = 0 s
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . initial setup = 2 s
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . payload setup = 8 s
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . stage-in = 0 s
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . payload execution = 7620 s
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . stage-out = 0 s
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | . log creation = 0 s
[2025-11-30 23:03:03] 2025-12-01 04:02:20,932 | INFO     | ..............................
[2025-11-30 23:03:03] 2025-12-01 04:02:21,013 | INFO     | 
[2025-11-30 23:03:03] 2025-12-01 04:02:21,013 | INFO     | job summary report
[2025-11-30 23:03:03] 2025-12-01 04:02:21,014 | INFO     | --------------------------------------------------
[2025-11-30 23:03:03] 2025-12-01 04:02:21,014 | INFO     | PanDA job id: 6900275232
[2025-11-30 23:03:03] 2025-12-01 04:02:21,014 | INFO     | task id: 47523618
[2025-11-30 23:03:03] 2025-12-01 04:02:21,014 | INFO     | errors: (none)
[2025-11-30 23:03:03] 2025-12-01 04:02:21,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 23:03:03] 2025-12-01 04:02:21,014 | INFO     | pilot state: finished 
[2025-11-30 23:03:03] 2025-12-01 04:02:21,014 | INFO     | transexitcode: 0
[2025-11-30 23:03:03] 2025-12-01 04:02:21,015 | INFO     | exeerrorcode: 0
[2025-11-30 23:03:03] 2025-12-01 04:02:21,015 | INFO     | exeerrordiag: 
[2025-11-30 23:03:03] 2025-12-01 04:02:21,015 | INFO     | exitcode: 0
[2025-11-30 23:03:03] 2025-12-01 04:02:21,015 | INFO     | exitmsg: OK
[2025-11-30 23:03:03] 2025-12-01 04:02:21,015 | INFO     | cpuconsumptiontime: 85359 s
[2025-11-30 23:03:03] 2025-12-01 04:02:21,015 | INFO     | nevents: 400
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | neventsw: 0
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | pid: 24666
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | pgrp: 24666
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | corecount: 12
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | event service: False
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | sizes: {0: 2283901, 5: 2284163, 11: 2284219, 7632: 2311831, 7634: 2320829, 7635: 2320885, 7640: 2321207}
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | --------------------------------------------------
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | 
[2025-11-30 23:03:03] 2025-12-01 04:02:21,016 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-30 23:03:03] 2025-12-01 04:02:21,041 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,041 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,042 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,043 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,043 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,044 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,044 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 23:03:03] 2025-12-01 04:02:21,044 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,044 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 23:03:03] 2025-12-01 04:02:21,044 | INFO     | job 6900275232 has completed (purged errors)
[2025-11-30 23:03:03] 2025-12-01 04:02:21,044 | INFO     | overall cleanup function is called
[2025-11-30 23:03:03] 2025-12-01 04:02:22,052 | INFO     | --- collectZombieJob: --- 10, [24666]
[2025-11-30 23:03:03] 2025-12-01 04:02:22,052 | INFO     | zombie collector waiting for pid 24666
[2025-11-30 23:03:03] 2025-12-01 04:02:22,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 23:03:03] 2025-12-01 04:02:22,053 | INFO     | collected zombie processes
[2025-11-30 23:03:03] 2025-12-01 04:02:22,053 | INFO     | will attempt to kill all subprocesses of pid=24666
[2025-11-30 23:03:03] 2025-12-01 04:02:22,143 | INFO     | process IDs to be killed: [24666] (in reverse order)
[2025-11-30 23:03:03] 2025-12-01 04:02:22,194 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 23:03:03] 2025-12-01 04:02:22,194 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 23:03:03] 2025-12-01 04:02:22,197 | INFO     | did not find any defunct processes belonging to 24666
[2025-11-30 23:03:03] 2025-12-01 04:02:22,199 | INFO     | did not find any defunct processes belonging to 24666
[2025-11-30 23:03:03] 2025-12-01 04:02:22,201 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 23:03:03] 2025-12-01 04:02:22,201 | INFO     | ready for new job
[2025-11-30 23:03:03] 2025-12-01 04:02:22,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 23:03:03] 2025-12-01 04:02:22,202 | INFO     | ***************************************
[2025-11-30 23:03:03] 2025-12-01 04:02:22,202 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 23:03:03] 2025-12-01 04:02:22,202 | INFO     | ***************************************
[2025-11-30 23:03:03] 2025-12-01 04:02:22,203 | INFO     | 
[2025-11-30 23:03:03] 2025-12-01 04:02:22,203 | INFO     | architecture information:
[2025-11-30 23:03:03] 2025-12-01 04:02:22,204 | INFO     | executing command: cat /etc/os-release
[2025-11-30 23:03:03] 2025-12-01 04:02:22,219 | INFO     | cat /etc/os-release:
[2025-11-30 23:03:03] NAME="CentOS Linux"
[2025-11-30 23:03:03] VERSION="7 (Core)"
[2025-11-30 23:03:03] ID="centos"
[2025-11-30 23:03:03] ID_LIKE="rhel fedora"
[2025-11-30 23:03:03] VERSION_ID="7"
[2025-11-30 23:03:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 23:03:03] ANSI_COLOR="0;31"
[2025-11-30 23:03:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 23:03:03] HOME_URL="https://www.centos.org/"
[2025-11-30 23:03:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 23:03:03] 
[2025-11-30 23:03:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 23:03:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 23:03:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 23:03:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 23:03:03] 
[2025-11-30 23:03:03] 2025-12-01 04:02:22,219 | INFO     | ***************************************
[2025-11-30 23:03:03] 2025-12-01 04:02:22,722 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-30 23:03:03] 2025-12-01 04:02:22,739 | INFO     | sufficient remaining disk space (29068623872 B)
[2025-11-30 23:03:03] 2025-12-01 04:02:22,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 23:03:03] 2025-12-01 04:02:22,740 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 23:03:03] 2025-12-01 04:02:22,740 | INFO     | update_server=False
[2025-11-30 23:03:03] 2025-12-01 04:02:22,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 23:03:03] 2025-12-01 04:02:22,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 23:03:03] 2025-12-01 04:02:22,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 23:03:03] 2025-12-01 04:02:22,907 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 23:03:03] 2025-12-01 04:02:22,907 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 23:03:03] 2025-12-01 04:02:22,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 23:03:03] 2025-12-01 04:02:22,907 | INFO     | will abort loop
[2025-11-30 23:03:03] 2025-12-01 04:02:22,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 23:03:03] 2025-12-01 04:02:23,035 | INFO     | all data control threads have been joined
[2025-11-30 23:03:03] 2025-12-01 04:02:23,047 | INFO     | all job control threads have been joined
[2025-11-30 23:03:03] 2025-12-01 04:02:23,716 | INFO     | all payload control threads have been joined
[2025-11-30 23:03:03] 2025-12-01 04:02:23,746 | INFO     | [job] retrieve thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:23,747 | INFO     | [job] queue monitor thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:23,912 | INFO     | [job] job monitor thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,018 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,041 | INFO     | [data] control thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,050 | INFO     | [job] control thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,096 | INFO     | [payload] failed_post thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,362 | INFO     | [job] validate thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,397 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,400 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,721 | INFO     | [payload] control thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,778 | INFO     | [payload] validate_post thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:24,989 | INFO     | [data] copytool_out thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:25,094 | INFO     | [data] copytool_in thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:26,747 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:33,760 | INFO     | job.realtimelogging is not enabled
[2025-11-30 23:03:03] 2025-12-01 04:02:34,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 23:03:03] 2025-12-01 04:02:52,924 | INFO     | PID=18175 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 23:03:03] 2025-12-01 04:02:52,924 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 23:03:03] 2025-12-01 04:02:52,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 23:03:03] 2025-12-01 04:02:52,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 23:03:03] 2025-12-01 04:02:56,510 | INFO     | [monitor] cgroup control has ended
[2025-11-30 23:03:03] 2025-12-01 04:02:58,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742689122112)>', '<ExcThread(monitor, started 139741567633152)>']
[2025-11-30 23:03:03] 2025-12-01 04:02:58,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 23:03:03] 2025-12-01 04:02:58,952 | INFO     | [monitor] control thread has ended
[2025-11-30 23:03:03] 2025-12-01 04:03:03,195 | INFO     | all workflow threads have been joined
[2025-11-30 23:03:03] 2025-12-01 04:03:03,200 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 23:03:03] 2025-12-01 04:03:03,200 | INFO     | traces error code: 0
[2025-11-30 23:03:03] 2025-12-01 04:03:03,202 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 23:03:03] 2025-12-01 04:03:03,295 [wrapper] ==== pilot stdout END ====
[2025-11-30 23:03:03] 2025-12-01 04:03:03,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 23:03:03] 2025-12-01 04:03:03,303 [wrapper] pilotpid: 18175
[2025-11-30 23:03:03] 2025-12-01 04:03:03,307 [wrapper] Pilot exit status: 0
[2025-11-30 23:03:03] 2025-12-01 04:03:03,323 [wrapper] pandaids: 6900275232
[2025-11-30 23:03:03] 2025-12-01 04:03:03,361 [wrapper] cleanup supervisor_pilot  1893 18176
[2025-11-30 23:03:03] 2025-12-01 04:03:03,365 [wrapper] Test setup, not cleaning
[2025-11-30 23:03:03] 2025-12-01 04:03:03,369 [wrapper] apfmon messages muted
[2025-11-30 23:03:03] 2025-12-01 04:03:03,373 [wrapper] ==== wrapper stdout END ====
[2025-11-30 23:03:03] 2025-12-01 04:03:03,377 [wrapper] ==== wrapper stderr END ====
[2025-11-30 23:03:03]  *** Error codes and diagnostics ***
[2025-11-30 23:03:03]     "exeErrorCode": 0,
[2025-11-30 23:03:03]     "exeErrorDiag": "",
[2025-11-30 23:03:03]     "pilotErrorCode": 0,
[2025-11-30 23:03:03]     "pilotErrorDiag": "",
[2025-11-30 23:03:03]  *** Listing of results directory ***
[2025-11-30 23:03:03] total 606028
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 17:41 queuedata.json
[2025-11-30 23:03:03] -rwx------ 1 boincer umatlas     36292 Nov 28 17:43 runpilot2-wrapper.sh
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas       100 Nov 30 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 23:03:03] -rwxr-xr-x 1 boincer umatlas      7986 Nov 30 20:54 run_atlas
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas       105 Nov 30 20:54 job.xml
[2025-11-30 23:03:03] -rw-r--r-- 2 boincer umatlas 308463861 Nov 30 20:54 EVNT.47523616._000005.pool.root.1
[2025-11-30 23:03:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 20:54 start_atlas.sh
[2025-11-30 23:03:03] drwxrwx--x 2 boincer umatlas      4096 Nov 30 20:54 shared
[2025-11-30 23:03:03] -rw-r--r-- 2 boincer umatlas    589969 Nov 30 20:54 input.tar.gz
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas         0 Nov 30 20:54 boinc_lockfile
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas      2614 Nov 30 20:54 pandaJob.out
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas        57 Nov 30 20:54 setup.sh.local
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas    993253 Nov 30 20:54 agis_schedconf.cvmfs.json
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas   1516240 Nov 30 20:54 agis_ddmendpoints.agis.ALL.json
[2025-11-30 23:03:03] drwx------ 5 boincer umatlas      4096 Nov 30 20:54 pilot3
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas      5954 Nov 30 23:01 init_data.xml
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas 305138690 Nov 30 23:01 HITS.47523618._000129.pool.root.1
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas       529 Nov 30 23:01 boinc_task_state.xml
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas      1055 Nov 30 23:02 memory_monitor_summary.json
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas    440602 Nov 30 23:02 log.47523618._000129.job.log.tgz.1
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas      7839 Nov 30 23:02 heartbeat.json
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas      8192 Nov 30 23:02 boinc_mmap_file
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas        27 Nov 30 23:02 wrapper_checkpoint.txt
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas        95 Nov 30 23:02 pilot_heartbeat.json
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas      5004 Nov 30 23:03 pilotlog.txt
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas   1081846 Nov 30 23:03 log.47523618._000129.job.log.1
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas       357 Nov 30 23:03 output.list
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas       620 Nov 30 23:03 runtime_log
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas   1546240 Nov 30 23:03 result.tar.gz
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas      9344 Nov 30 23:03 runtime_log.err
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas       661 Nov 30 23:03 hzPODmKMMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6QLKDma0jjsn.diag
[2025-11-30 23:03:03] -rw-r--r-- 1 boincer umatlas     21154 Nov 30 23:03 stderr.txt
[2025-11-30 23:03:03] HITS file was successfully produced:
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas 305138690 Nov 30 23:01 shared/HITS.pool.root.1
[2025-11-30 23:03:03]  *** Contents of shared directory: ***
[2025-11-30 23:03:03] total 601340
[2025-11-30 23:03:03] -rw-r--r-- 2 boincer umatlas 308463861 Nov 30 20:54 ATLAS.root_0
[2025-11-30 23:03:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 20:54 start_atlas.sh
[2025-11-30 23:03:03] -rw-r--r-- 2 boincer umatlas    589969 Nov 30 20:54 input.tar.gz
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas 305138690 Nov 30 23:01 HITS.pool.root.1
[2025-11-30 23:03:03] -rw------- 1 boincer umatlas   1546240 Nov 30 23:03 result.tar.gz
23:03:05 (14481): run_atlas exited; CPU time 85313.557944
23:03:05 (14481): called boinc_finish(0)

</stderr_txt>
]]>

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