Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:00:13 (844257): wrapper (7.7.26015): starting
21:00:13 (844257): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 21:00:13] Arguments: --nthreads 8
[2025-11-30 21:00:13] Threads: 8
[2025-11-30 21:00:13] Checking for CVMFS
[2025-11-30 21:00:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 21:00:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 21:00:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 21:00:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 21:00:14] 2.13.3.0 11235 34926 190732 153500 3 925 28947732 32935936 45526 16776704 0 281791140 99.583 285778543 33062 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 21:00:14] CVMFS is ok
[2025-11-30 21:00:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 21:00:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 21:00:14] Further information can be found at the LHC@home message board.
[2025-11-30 21:00:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 21:00:14] Checking for apptainer binary...
[2025-11-30 21:00:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 21:00:14] Running /usr/bin/apptainer --version
[2025-11-30 21:00:14] apptainer version 1.4.4-1.el9
[2025-11-30 21:00:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 21:00:15] c7-2-37.aglt2.org
[2025-11-30 21:00:15] apptainer works
[2025-11-30 21:00:15] Set ATHENA_PROC_NUMBER=8
[2025-11-30 21:00:15] Set ATHENA_CORE_NUMBER=8
[2025-11-30 21:00:15] Starting ATLAS job with PandaID=6905246325
[2025-11-30 21:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:06 (844257): BOINC client no longer exists - exiting
00:20:06 (844257): timer handler: client dead, exiting
00:28:41 (3681442): wrapper (7.7.26015): starting
00:28:41 (3681442): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 00:28:41] Arguments: --nthreads 9
[2025-12-01 00:28:41] Threads: 9
[2025-12-01 00:28:41] This job has been restarted, cleaning up previous attempt
[2025-12-01 00:28:41] Checking for CVMFS
[2025-12-01 00:28:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:28:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:28:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:28:42] 2.13.3.0 11235 35135 190844 153507 0 640 32480188 32935936 36191 16776704 0 285029505 99.586 286442225 33060 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 00:28:42] CVMFS is ok
[2025-12-01 00:28:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:28:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:28:43] Further information can be found at the LHC@home message board.
[2025-12-01 00:28:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:28:43] Checking for apptainer binary...
[2025-12-01 00:28:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:28:43] Running /usr/bin/apptainer --version
[2025-12-01 00:28:43] apptainer version 1.4.4-1.el9
[2025-12-01 00:28:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:28:43] c7-2-37.aglt2.org
[2025-12-01 00:28:43] apptainer works
[2025-12-01 00:28:43] Set ATHENA_PROC_NUMBER=9
[2025-12-01 00:28:43] Set ATHENA_CORE_NUMBER=9
[2025-12-01 00:28:43] Starting ATLAS job with PandaID=6905246325
[2025-12-01 00:28:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 03:29:31]  *** The last 200 lines of the pilot log: ***
[2025-12-02 03:29:31] 2025-12-02 08:28:47,213 | INFO     | mean x: 1764615528.7355528
[2025-12-02 03:29:31] 2025-12-02 08:28:47,213 | INFO     | mean y: 3512757.347361809
[2025-12-02 03:29:31] 2025-12-02 08:28:47,213 | INFO     | intersect: -9002942971.253813
[2025-12-02 03:29:31] 2025-12-02 08:28:47,215 | INFO     | chi2: 10.890602236196335
[2025-12-02 03:29:31] 2025-12-02 08:28:47,216 | INFO     | sum of square deviations: 1239288433220.1562
[2025-12-02 03:29:31] 2025-12-02 08:28:47,289 | INFO     | sum of deviations: 7086679684978.12
[2025-12-02 03:29:31] 2025-12-02 08:28:47,289 | INFO     | mean x: 1764615376.2457466
[2025-12-02 03:29:31] 2025-12-02 08:28:47,289 | INFO     | mean y: 3521862.5381222432
[2025-12-02 03:29:31] 2025-12-02 08:28:47,289 | INFO     | intersect: -10087158888.95343
[2025-12-02 03:29:31] 2025-12-02 08:28:47,291 | INFO     | chi2: 7.278638739507662
[2025-12-02 03:29:31] 2025-12-02 08:28:47,291 | INFO     | current chi2=7.278638739507662 (change=33.165874745510784 %)
[2025-12-02 03:29:31] 2025-12-02 08:28:47,299 | INFO     | sum of square deviations: 1227612380619.8174
[2025-12-02 03:29:31] 2025-12-02 08:28:47,359 | INFO     | sum of deviations: 7756005768258.5205
[2025-12-02 03:29:31] 2025-12-02 08:28:47,359 | INFO     | mean x: 1764615223.756005
[2025-12-02 03:29:31] 2025-12-02 08:28:47,359 | INFO     | mean y: 3530602.208596713
[2025-12-02 03:29:31] 2025-12-02 08:28:47,359 | INFO     | intersect: -11145237584.128994
[2025-12-02 03:29:31] 2025-12-02 08:28:47,360 | INFO     | chi2: 3.8725039210002654
[2025-12-02 03:29:31] 2025-12-02 08:28:47,361 | INFO     | current chi2=3.8725039210002654 (change=46.79631645982464 %)
[2025-12-02 03:29:31] 2025-12-02 08:28:47,362 | INFO     | sum of square deviations: 1216008850642.9277
[2025-12-02 03:29:31] 2025-12-02 08:28:47,497 | INFO     | sum of deviations: 7934813499320.554
[2025-12-02 03:29:31] 2025-12-02 08:28:47,497 | INFO     | mean x: 1764615071.2593532
[2025-12-02 03:29:31] 2025-12-02 08:28:47,497 | INFO     | mean y: 3532949.03043754
[2025-12-02 03:29:31] 2025-12-02 08:28:47,497 | INFO     | intersect: -11511096637.037247
[2025-12-02 03:29:31] 2025-12-02 08:28:47,523 | INFO     | chi2: 3.3844059022768693
[2025-12-02 03:29:31] 2025-12-02 08:28:47,523 | INFO     | current chi2=3.3844059022768693 (change=12.604196888645646 %)
[2025-12-02 03:29:31] 2025-12-02 08:28:47,523 | INFO     | right removable region: 1576
[2025-12-02 03:29:31] 2025-12-02 08:28:47,524 | INFO     | sum of square deviations: 1239285291110.159
[2025-12-02 03:29:31] 2025-12-02 08:28:47,661 | INFO     | sum of deviations: 5740671430276.074
[2025-12-02 03:29:31] 2025-12-02 08:28:47,662 | INFO     | mean x: 1764615681.2457466
[2025-12-02 03:29:31] 2025-12-02 08:28:47,662 | INFO     | mean y: 3521117.789540013
[2025-12-02 03:29:31] 2025-12-02 08:28:47,662 | INFO     | intersect: -8170608680.57999
[2025-12-02 03:29:31] 2025-12-02 08:28:47,663 | INFO     | chi2: 8.051226209802156
[2025-12-02 03:29:31] 2025-12-02 08:28:47,663 | INFO     | current chi2=8.051226209802156 (change=26.0717999318453 %)
[2025-12-02 03:29:31] 2025-12-02 08:28:47,664 | INFO     | sum of square deviations: 1227607644123.8494
[2025-12-02 03:29:31] 2025-12-02 08:28:47,840 | INFO     | monitor loop #3896: job 0:6905246325 is in state 'finished'
[2025-12-02 03:29:31] 2025-12-02 08:28:47,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 03:29:31] 2025-12-02 08:28:48,178 | INFO     | sum of deviations: 5514753841667.935
[2025-12-02 03:29:31] 2025-12-02 08:28:48,179 | INFO     | mean x: 1764615833.7458913
[2025-12-02 03:29:31] 2025-12-02 08:28:48,179 | INFO     | mean y: 3524066.221238938
[2025-12-02 03:29:31] 2025-12-02 08:28:48,179 | INFO     | intersect: -7923619426.896703
[2025-12-02 03:29:31] 2025-12-02 08:28:48,180 | INFO     | chi2: 7.7471419817190235
[2025-12-02 03:29:31] 2025-12-02 08:28:48,180 | INFO     | current chi2=7.7471419817190235 (change=3.7768685186477295 %)
[2025-12-02 03:29:31] 2025-12-02 08:28:48,180 | INFO     | left removable region: 20
[2025-12-02 03:29:31] 2025-12-02 08:28:48,292 | INFO     | sum of square deviations: 1168068987035.782
[2025-12-02 03:29:31] 2025-12-02 08:28:48,702 | INFO     | sum of deviations: 6762184861956.913
[2025-12-02 03:29:31] 2025-12-02 08:28:48,727 | INFO     | mean x: 1764615650.767352
[2025-12-02 03:29:31] 2025-12-02 08:28:48,727 | INFO     | mean y: 3548159.206940874
[2025-12-02 03:29:31] 2025-12-02 08:28:48,727 | INFO     | intersect: -10212164588.267704
[2025-12-02 03:29:31] 2025-12-02 08:28:48,728 | INFO     | chi2: 0.09553917265297865
[2025-12-02 03:29:31] 2025-12-02 08:28:48,728 | INFO     | current memory leak: 5.79 B/s (using 1556 data points, chi2=0.10)
[2025-12-02 03:29:31] 2025-12-02 08:28:48,729 | INFO     | could have reported an average CPU frequency of 3292 MHz (56 samples)
[2025-12-02 03:29:31] 2025-12-02 08:28:48,729 | INFO     | ..............................
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . Timing measurements:
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . get job = 0 s
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . initial setup = 2 s
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . payload setup = 19 s
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . stage-in = 0 s
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . payload execution = 97098 s
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . stage-out = 14 s
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | . log creation = 5 s
[2025-12-02 03:29:31] 2025-12-02 08:28:48,730 | INFO     | ..............................
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | 
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | job summary report
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | --------------------------------------------------
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | PanDA job id: 6905246325
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | task id: 47530725
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | errors: (none)
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | pilot state: finished 
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | transexitcode: 0
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | exeerrorcode: 0
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | exeerrordiag: 
[2025-12-02 03:29:31] 2025-12-02 08:28:49,881 | INFO     | exitcode: 0
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | exitmsg: OK
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | cpuconsumptiontime: 160225 s
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | nevents: 1000
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | neventsw: 0
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | pid: 3793029
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | pgrp: 3793029
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | corecount: 9
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | event service: False
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | sizes: {0: 2284399, 8: 2284661, 11: 2284689, 97120: 2369169, 97121: 2369168, 97136: 2378218, 97141: 2378402, 97167: 2378648}
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | --------------------------------------------------
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | 
[2025-12-02 03:29:31] 2025-12-02 08:28:49,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-02 03:29:31] 2025-12-02 08:28:49,993 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,993 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 03:29:31] 2025-12-02 08:28:49,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,995 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 03:29:31] 2025-12-02 08:28:49,995 | INFO     | job 6905246325 has completed (purged errors)
[2025-12-02 03:29:31] 2025-12-02 08:28:49,995 | INFO     | overall cleanup function is called
[2025-12-02 03:29:31] 2025-12-02 08:28:51,209 | INFO     | --- collectZombieJob: --- 10, [3793029]
[2025-12-02 03:29:31] 2025-12-02 08:28:51,209 | INFO     | zombie collector waiting for pid 3793029
[2025-12-02 03:29:31] 2025-12-02 08:28:51,209 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 03:29:31] 2025-12-02 08:28:51,209 | INFO     | collected zombie processes
[2025-12-02 03:29:31] 2025-12-02 08:28:51,209 | INFO     | will attempt to kill all subprocesses of pid=3793029
[2025-12-02 03:29:31] 2025-12-02 08:28:52,490 | INFO     | PID=3718430 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 03:29:31] 2025-12-02 08:28:52,498 | INFO     | .. there are 77 such processes running
[2025-12-02 03:29:31] 2025-12-02 08:28:57,854 | INFO     | process IDs to be killed: [3793029] (in reverse order)
[2025-12-02 03:29:31] 2025-12-02 08:28:58,234 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 03:29:31] 2025-12-02 08:28:58,234 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 03:29:31] 2025-12-02 08:28:58,354 | INFO     | did not find any defunct processes belonging to 3793029
[2025-12-02 03:29:31] 2025-12-02 08:28:58,429 | INFO     | did not find any defunct processes belonging to 3793029
[2025-12-02 03:29:31] 2025-12-02 08:28:58,442 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 03:29:31] 2025-12-02 08:28:58,442 | INFO     | ready for new job
[2025-12-02 03:29:31] 2025-12-02 08:28:58,442 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 03:29:31] 2025-12-02 08:28:58,459 | INFO     | ***************************************
[2025-12-02 03:29:31] 2025-12-02 08:28:58,459 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 03:29:31] 2025-12-02 08:28:58,459 | INFO     | ***************************************
[2025-12-02 03:29:31] 2025-12-02 08:28:58,459 | INFO     | 
[2025-12-02 03:29:31] 2025-12-02 08:28:58,477 | INFO     | architecture information:
[2025-12-02 03:29:31] 2025-12-02 08:28:58,481 | INFO     | executing command: cat /etc/os-release
[2025-12-02 03:29:31] 2025-12-02 08:28:58,533 | INFO     | cat /etc/os-release:
[2025-12-02 03:29:31] NAME="CentOS Linux"
[2025-12-02 03:29:31] VERSION="7 (Core)"
[2025-12-02 03:29:31] ID="centos"
[2025-12-02 03:29:31] ID_LIKE="rhel fedora"
[2025-12-02 03:29:31] VERSION_ID="7"
[2025-12-02 03:29:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 03:29:31] ANSI_COLOR="0;31"
[2025-12-02 03:29:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 03:29:31] HOME_URL="https://www.centos.org/"
[2025-12-02 03:29:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 03:29:31] 
[2025-12-02 03:29:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 03:29:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 03:29:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 03:29:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 03:29:31] 
[2025-12-02 03:29:31] 2025-12-02 08:28:58,533 | INFO     | ***************************************
[2025-12-02 03:29:31] 2025-12-02 08:28:59,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-02 03:29:31] 2025-12-02 08:28:59,218 | INFO     | sufficient remaining disk space (69977767936 B)
[2025-12-02 03:29:31] 2025-12-02 08:28:59,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 03:29:31] 2025-12-02 08:28:59,218 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 03:29:31] 2025-12-02 08:28:59,218 | INFO     | update_server=False
[2025-12-02 03:29:31] 2025-12-02 08:28:59,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 03:29:31] 2025-12-02 08:28:59,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 03:29:31] 2025-12-02 08:28:59,219 | INFO     | aborting loop
[2025-12-02 03:29:31] 2025-12-02 08:28:59,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 03:29:31] 2025-12-02 08:28:59,417 | INFO     | all job control threads have been joined
[2025-12-02 03:29:31] 2025-12-02 08:28:59,777 | INFO     | all data control threads have been joined
[2025-12-02 03:29:31] 2025-12-02 08:29:00,225 | INFO     | [job] retrieve thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,225 | INFO     | [job] job monitor thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,246 | INFO     | [job] queue monitor thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,337 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 03:29:31] 2025-12-02 08:29:00,367 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,375 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,375 | INFO     | [data] copytool_in thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,421 | INFO     | [job] validate thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,421 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,441 | INFO     | [job] control thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:00,487 | INFO     | all payload control threads have been joined
[2025-12-02 03:29:31] 2025-12-02 08:29:00,787 | INFO     | [data] control thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:01,203 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:01,493 | INFO     | [payload] control thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:01,700 | INFO     | [payload] failed_post thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:01,845 | INFO     | [payload] validate_post thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:01,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 03:29:31] 2025-12-02 08:29:02,344 | INFO     | [data] copytool_out thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:05,891 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 03:29:31] 2025-12-02 08:29:17,859 [wrapper] supervise_pilot (15 min periods counter: 109)
[2025-12-02 03:29:31] 2025-12-02 08:29:20,528 | INFO     | [monitor] cgroup control has ended
[2025-12-02 03:29:31] 2025-12-02 08:29:21,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377522247488)>', '<ExcThread(monitor, started 140376509773568)>']
[2025-12-02 03:29:31] 2025-12-02 08:29:26,875 | INFO     | all workflow threads have been joined
[2025-12-02 03:29:31] 2025-12-02 08:29:26,875 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 03:29:31] 2025-12-02 08:29:26,875 | INFO     | traces error code: 0
[2025-12-02 03:29:31] 2025-12-02 08:29:26,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 03:29:31] 2025-12-02 08:29:30,168 | INFO     | PID=3718430 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 03:29:31] 2025-12-02 08:29:30,168 | INFO     | .. there are 78 such processes running
[2025-12-02 03:29:31] 2025-12-02 08:29:30,168 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 03:29:31] 2025-12-02 08:29:30,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 03:29:31] 2025-12-02 08:29:30,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 03:29:31] 2025-12-02 08:29:30,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 03:29:31] 2025-12-02 08:29:30,169 | INFO     | [monitor] control thread has ended
[2025-12-02 03:29:31] 2025-12-02 08:29:30,529 [wrapper] ==== pilot stdout END ====
[2025-12-02 03:29:31] 2025-12-02 08:29:30,566 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 03:29:31] 2025-12-02 08:29:30,570 [wrapper] pilotpid: 3718430
[2025-12-02 03:29:31] 2025-12-02 08:29:30,574 [wrapper] Pilot exit status: 0
[2025-12-02 03:29:31] 2025-12-02 08:29:30,660 [wrapper] pandaids: 6905246325 6905246325
[2025-12-02 03:29:31] 2025-12-02 08:29:30,888 [wrapper] cleanup supervisor_pilot 1086825 3718431
[2025-12-02 03:29:31] 2025-12-02 08:29:30,895 [wrapper] Test setup, not cleaning
[2025-12-02 03:29:31] 2025-12-02 08:29:30,908 [wrapper] apfmon messages muted
[2025-12-02 03:29:31] 2025-12-02 08:29:30,912 [wrapper] ==== wrapper stdout END ====
[2025-12-02 03:29:31] 2025-12-02 08:29:30,914 [wrapper] ==== wrapper stderr END ====
[2025-12-02 03:29:31]  *** Error codes and diagnostics ***
[2025-12-02 03:29:31]     "exeErrorCode": 0,
[2025-12-02 03:29:31]     "exeErrorDiag": "",
[2025-12-02 03:29:31]     "pilotErrorCode": 0,
[2025-12-02 03:29:31]     "pilotErrorDiag": "",
[2025-12-02 03:29:31]  *** Listing of results directory ***
[2025-12-02 03:29:31] total 1436884
[2025-12-02 03:29:31] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 03:29:31] -rwx------. 1 boincer umatlas     36292 Nov 29 19:20 runpilot2-wrapper.sh
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:24 pilot3.tar.gz
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:24 queuedata.json
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas       100 Nov 30 21:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 03:29:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 21:00 run_atlas
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas       105 Nov 30 21:00 job.xml
[2025-12-02 03:29:31] -rw-r--r--. 3 boincer umatlas 375332381 Nov 30 21:00 EVNT.47530720._000028.pool.root.1
[2025-12-02 03:29:31] -rw-r--r--. 3 boincer umatlas 375332381 Nov 30 21:00 ATLAS.root_0
[2025-12-02 03:29:31] -rw-r--r--. 2 boincer umatlas    590135 Nov 30 21:00 input.tar.gz
[2025-12-02 03:29:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 21:00 start_atlas.sh
[2025-12-02 03:29:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 21:00 shared
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas         0 Nov 30 21:00 boinc_lockfile
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas      2878 Dec  1 00:28 pandaJob.out
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas        57 Dec  1 00:28 setup.sh.local
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas    992521 Dec  1 00:29 agis_schedconf.cvmfs.json
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas       533 Dec  2 03:12 boinc_task_state.xml
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas      6946 Dec  2 03:19 init_data.xml
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas 692290146 Dec  2 03:27 HITS.47530725._001678.pool.root.1
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas      1062 Dec  2 03:28 memory_monitor_summary.json
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas   1516240 Dec  2 03:28 agis_ddmendpoints.agis.ALL.json
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas   2578885 Dec  2 03:28 log.47530725._001678.job.log.tgz.1
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas     27792 Dec  2 03:28 heartbeat.json
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas        96 Dec  2 03:28 pilot_heartbeat.json
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 03:29 boinc_mmap_file
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas        29 Dec  2 03:29 wrapper_checkpoint.txt
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas       823 Dec  2 03:29 pilotlog.txt
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas   9647013 Dec  2 03:29 log.47530725._001678.job.log.1
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas       353 Dec  2 03:29 output.list
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas       620 Dec  2 03:29 runtime_log
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas  12267520 Dec  2 03:29 result.tar.gz
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas      9423 Dec  2 03:29 runtime_log.err
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas       789 Dec  2 03:29 6dFNDmZMkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvVPKDm7omU9m.diag
[2025-12-02 03:29:31] -rw-r--r--. 1 boincer umatlas     23605 Dec  2 03:29 stderr.txt
[2025-12-02 03:29:31] HITS file was successfully produced:
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas 692290146 Dec  2 03:27 shared/HITS.pool.root.1
[2025-12-02 03:29:31]  *** Contents of shared directory: ***
[2025-12-02 03:29:31] total 1055188
[2025-12-02 03:29:31] -rw-r--r--. 3 boincer umatlas 375332381 Nov 30 21:00 ATLAS.root_0
[2025-12-02 03:29:31] -rw-r--r--. 2 boincer umatlas    590135 Nov 30 21:00 input.tar.gz
[2025-12-02 03:29:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 21:00 start_atlas.sh
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas 692290146 Dec  2 03:27 HITS.pool.root.1
[2025-12-02 03:29:31] -rw-------. 1 boincer umatlas  12267520 Dec  2 03:29 result.tar.gz
03:29:32 (3681442): run_atlas exited; CPU time 161789.294317
03:29:32 (3681442): called boinc_finish(0)

</stderr_txt>
]]>

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