Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:08:12 (2840338): wrapper (7.7.26015): starting
17:08:12 (2840338): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 17:08:12] Arguments: --nthreads 12
[2025-11-30 17:08:12] Threads: 12
[2025-11-30 17:08:12] Checking for CVMFS
[2025-11-30 17:08:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 17:08:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 17:08:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 17:08:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 17:08:12] 2.11.5.0 3817131 34606 249992 153499 3 281 41683003 45568000 1226 130560 0 304726819 99.799 177748067 24325 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-30 17:08:12] CVMFS is ok
[2025-11-30 17:08:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 17:08:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 17:08:12] Further information can be found at the LHC@home message board.
[2025-11-30 17:08:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 17:08:12] Checking for apptainer binary...
[2025-11-30 17:08:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 17:08:12] Running /usr/bin/apptainer --version
[2025-11-30 17:08:12] apptainer version 1.4.1-1.el9
[2025-11-30 17:08:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 17:08:12] wns0035.triumf.lcg
[2025-11-30 17:08:12] apptainer works
[2025-11-30 17:08:12] Set ATHENA_PROC_NUMBER=12
[2025-11-30 17:08:12] Set ATHENA_CORE_NUMBER=12
[2025-11-30 17:08:12] Starting ATLAS job with PandaID=6904565509
[2025-11-30 17:08:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 17:11:25]  *** The last 200 lines of the pilot log: ***
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | found no stored workdir sizes
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | INFO     | will not add max space = 0 B to job metrics
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | wrong length of table data, x=[1764551320.0], y=[30924.0] (must be same and length>=4)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | could have reported an average CPU frequency of 3145 MHz (4 samples)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | ..............................
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . Timing measurements:
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . get job = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . initial setup = 2 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . payload setup = 3 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . stage-in = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . payload execution = 13 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . stage-out = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . log creation = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | ..............................
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6904565509/pilotlog.txt
[2025-11-30 17:11:25] 2025-12-01 01:10:53,057 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-30 17:11:25] - Log from pilotlog.txt -
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | found no stored workdir sizes
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | INFO     | will not add max space = 0 B to job metrics
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | wrong length of table data, x=[1764551320.0], y=[30924.0] (must be same and length>=4)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | could have reported an average CPU frequency of 3145 MHz (4 samples)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | ..............................
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . Timing measurements:
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . get job = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . initial setup = 2 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . payload setup = 3 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . stage-in = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . payload execution = 13 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . stage-out = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . log creation = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | ..............................
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6904565509/pilotlog.txt
[2025-11-30 17:11:25] 2025-12-01 01:10:53,057 | WARNING  | 
[2025-11-30 17:11:25] [begin log extracts]
[2025-11-30 17:11:25] - Log from pilotlog.txt -
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | found no stored workdir sizes
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | INFO     | will not add max space = 0 B to job metrics
[2025-11-30 17:11:25] 2025-12-01 01:10:53,047 | WARNING  | wrong length of table data, x=[1764551320.0], y=[30924.0] (must be same and length>=4)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | could have reported an average CPU frequency of 3145 MHz (4 samples)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | ..............................
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . Timing measurements:
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . get job = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . initial setup = 2 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . payload setup = 3 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . stage-in = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . payload execution = 13 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . stage-out = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | . log creation = 0 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | ..............................
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 17:11:25] 2025-12-01 01:10:53,048 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6904565509/pilotlog.txt
[2025-11-30 17:11:25] [end log extracts]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,057 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,058 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | 
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | job summary report
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | --------------------------------------------------
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | PanDA job id: 6904565509
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | task id: 47523908
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-30 17:08:45,965 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | pilot state: failed 
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | transexitcode: 65
[2025-11-30 17:11:25] 2025-12-01 01:10:53,318 | INFO     | exeerrorcode: 65
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | exitcode: 65
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | cpuconsumptiontime: 14 s
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | nevents: 0
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | neventsw: 0
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | pid: 2850573
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | pgrp: 2850573
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | corecount: 12
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | event service: False
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | sizes: {0: 2283901, 3: 2284163, 11: 2284191, 20: 2307354, 21: 2311650, 140: 2311788}
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | --------------------------------------------------
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | 
[2025-11-30 17:11:25] 2025-12-01 01:10:53,319 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 17:11:25] 2025-12-01 01:10:53,333 | INFO     | job 6904565509 has completed (purged errors)
[2025-11-30 17:11:25] 2025-12-01 01:10:53,333 | INFO     | overall cleanup function is called
[2025-11-30 17:11:25] 2025-12-01 01:10:54,339 | INFO     | --- collectZombieJob: --- 10, [2850573]
[2025-11-30 17:11:25] 2025-12-01 01:10:54,339 | INFO     | zombie collector waiting for pid 2850573
[2025-11-30 17:11:25] 2025-12-01 01:10:54,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 17:11:25] 2025-12-01 01:10:54,339 | INFO     | collected zombie processes
[2025-11-30 17:11:25] 2025-12-01 01:10:54,339 | INFO     | will attempt to kill all subprocesses of pid=2850573
[2025-11-30 17:11:25] 2025-12-01 01:10:54,427 | INFO     | process IDs to be killed: [2850573] (in reverse order)
[2025-11-30 17:11:25] 2025-12-01 01:10:54,458 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 17:11:25] 2025-12-01 01:10:54,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 17:11:25] 2025-12-01 01:10:54,461 | INFO     | did not find any defunct processes belonging to 2850573
[2025-11-30 17:11:25] 2025-12-01 01:10:54,464 | INFO     | did not find any defunct processes belonging to 2850573
[2025-11-30 17:11:25] 2025-12-01 01:10:54,464 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 17:11:25] 2025-12-01 01:10:54,464 | INFO     | ready for new job
[2025-11-30 17:11:25] 2025-12-01 01:10:54,465 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 17:11:25] 2025-12-01 01:10:54,465 | INFO     | ***************************************
[2025-11-30 17:11:25] 2025-12-01 01:10:54,465 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 17:11:25] 2025-12-01 01:10:54,465 | INFO     | ***************************************
[2025-11-30 17:11:25] 2025-12-01 01:10:54,466 | INFO     | 
[2025-11-30 17:11:25] 2025-12-01 01:10:54,467 | INFO     | architecture information:
[2025-11-30 17:11:25] 2025-12-01 01:10:54,467 | INFO     | executing command: cat /etc/os-release
[2025-11-30 17:11:25] 2025-12-01 01:10:54,474 | INFO     | cat /etc/os-release:
[2025-11-30 17:11:25] NAME="CentOS Linux"
[2025-11-30 17:11:25] VERSION="7 (Core)"
[2025-11-30 17:11:25] ID="centos"
[2025-11-30 17:11:25] ID_LIKE="rhel fedora"
[2025-11-30 17:11:25] VERSION_ID="7"
[2025-11-30 17:11:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 17:11:25] ANSI_COLOR="0;31"
[2025-11-30 17:11:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 17:11:25] HOME_URL="https://www.centos.org/"
[2025-11-30 17:11:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 17:11:25] 
[2025-11-30 17:11:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 17:11:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 17:11:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 17:11:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 17:11:25] 
[2025-11-30 17:11:25] 2025-12-01 01:10:54,474 | INFO     | ***************************************
[2025-11-30 17:11:25] 2025-12-01 01:10:54,977 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-30 17:11:25] 2025-12-01 01:10:54,984 | INFO     | sufficient remaining disk space (2222632992768 B)
[2025-11-30 17:11:25] 2025-12-01 01:10:54,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 17:11:25] 2025-12-01 01:10:54,984 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 17:11:25] 2025-12-01 01:10:54,985 | INFO     | update_server=False
[2025-11-30 17:11:25] 2025-12-01 01:10:54,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 17:11:25] 2025-12-01 01:10:54,985 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 17:11:25] 2025-12-01 01:10:54,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 17:11:25] 2025-12-01 01:10:54,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 17:11:25] 2025-12-01 01:10:54,986 | INFO     | aborting loop
[2025-11-30 17:11:25] 2025-12-01 01:10:55,144 | INFO     | all data control threads have been joined
[2025-11-30 17:11:25] 2025-12-01 01:10:55,990 | INFO     | [job] retrieve thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:55,991 | INFO     | [job] queue monitor thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:55,991 | INFO     | [job] job monitor thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:56,034 | INFO     | all payload control threads have been joined
[2025-11-30 17:11:25] 2025-12-01 01:10:56,079 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:56,150 | INFO     | [data] control thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:56,451 | INFO     | all job control threads have been joined
[2025-11-30 17:11:25] 2025-12-01 01:10:56,485 | INFO     | [payload] failed_post thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:56,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 17:11:25] 2025-12-01 01:10:56,991 | INFO     | [data] copytool_out thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,039 | INFO     | [payload] control thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,355 | INFO     | [data] copytool_in thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,374 | INFO     | [job] validate thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,425 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,456 | INFO     | [job] control thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,485 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:10:57,537 | INFO     | [payload] validate_post thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:11:00,951 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 17:11:25] 2025-12-01 01:11:19,584 | INFO     | [monitor] cgroup control has ended
[2025-11-30 17:11:25] 2025-12-01 01:11:20,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139745631762240)>', '<ExcThread(monitor, started 139744872752896)>']
[2025-11-30 17:11:25] 2025-12-01 01:11:24,697 | INFO     | PID=2844017 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 17:11:25] 2025-12-01 01:11:24,697 | INFO     | .. there are 2 such processes running
[2025-11-30 17:11:25] 2025-12-01 01:11:24,698 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 17:11:25] 2025-12-01 01:11:24,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 17:11:25] 2025-12-01 01:11:24,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 17:11:25] 2025-12-01 01:11:24,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 17:11:25] 2025-12-01 01:11:24,698 | INFO     | [monitor] control thread has ended
[2025-11-30 17:11:25] 2025-12-01 01:11:25,809 | INFO     | all workflow threads have been joined
[2025-11-30 17:11:25] 2025-12-01 01:11:25,809 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 17:11:25] 2025-12-01 01:11:25,809 | INFO     | traces error code: 0
[2025-11-30 17:11:25] 2025-12-01 01:11:25,810 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 17:11:25] 2025-12-01 01:11:25,874 [wrapper] ==== pilot stdout END ====
[2025-11-30 17:11:25] 2025-12-01 01:11:25,876 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 17:11:25] 2025-12-01 01:11:25,877 [wrapper] pilotpid: 2844017
[2025-11-30 17:11:25] 2025-12-01 01:11:25,879 [wrapper] Pilot exit status: 0
[2025-11-30 17:11:25] 2025-12-01 01:11:25,885 [wrapper] pandaids: 6904565509
[2025-11-30 17:11:25] 2025-12-01 01:11:25,907 [wrapper] cleanup supervisor_pilot 2844023 2844018
[2025-11-30 17:11:25] 2025-12-01 01:11:25,908 [wrapper] Test setup, not cleaning
[2025-11-30 17:11:25] 2025-12-01 01:11:25,910 [wrapper] apfmon messages muted
[2025-11-30 17:11:25] 2025-12-01 01:11:25,912 [wrapper] ==== wrapper stdout END ====
[2025-11-30 17:11:25] 2025-12-01 01:11:25,913 [wrapper] ==== wrapper stderr END ====
[2025-11-30 17:11:25]  *** Error codes and diagnostics ***
[2025-11-30 17:11:25]     "exeErrorCode": 65,
[2025-11-30 17:11:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-11-30 17:11:25]     "pilotErrorCode": 1305,
[2025-11-30 17:11:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-11-30 17:11:25]  *** Listing of results directory ***
[2025-11-30 17:11:25] total 295420
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc    576529 Nov 29 16:16 pilot3.tar.gz
[2025-11-30 17:11:25] -rwx------. 1 boinc boinc     36292 Nov 29 16:19 runpilot2-wrapper.sh
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc      5112 Nov 29 16:24 queuedata.json
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc       100 Nov 30 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 17:11:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 17:08 run_atlas
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc       105 Nov 30 17:08 job.xml
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc      6597 Nov 30 17:08 init_data.xml
[2025-11-30 17:11:25] -rw-r--r--. 2 boinc boinc 298388766 Nov 30 17:08 EVNT.47523904._000001.pool.root.1
[2025-11-30 17:11:25] -rw-r--r--. 2 boinc boinc     15847 Nov 30 17:08 start_atlas.sh
[2025-11-30 17:11:25] drwxrwx--x. 2 boinc boinc      4096 Nov 30 17:08 shared
[2025-11-30 17:11:25] -rw-r--r--. 2 boinc boinc    589959 Nov 30 17:08 input.tar.gz
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc         0 Nov 30 17:08 boinc_lockfile
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc      2618 Nov 30 17:08 pandaJob.out
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc    993253 Nov 30 17:08 agis_schedconf.cvmfs.json
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc   1516240 Nov 30 17:08 agis_ddmendpoints.agis.ALL.json
[2025-11-30 17:11:25] drwx------. 5 boinc boinc      4096 Nov 30 17:08 pilot3
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc       963 Nov 30 17:08 memory_monitor_summary.json
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc     20506 Nov 30 17:08 log.47523908._000147.job.log.tgz.1
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc      8398 Nov 30 17:10 heartbeat.json
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc       523 Nov 30 17:11 boinc_task_state.xml
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc        95 Nov 30 17:11 pilot_heartbeat.json
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc      8192 Nov 30 17:11 boinc_mmap_file
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc        22 Nov 30 17:11 wrapper_checkpoint.txt
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc      4822 Nov 30 17:11 pilotlog.txt
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc     84566 Nov 30 17:11 log.47523908._000147.job.log.1
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc       188 Nov 30 17:11 output.list
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc       620 Nov 30 17:11 runtime_log
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc    122880 Nov 30 17:11 result.tar.gz
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc      8636 Nov 30 17:11 runtime_log.err
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc       643 Nov 30 17:11 bHeNDmcLkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQTPKDmTUuv2m.diag
[2025-11-30 17:11:25] -rw-r--r--. 1 boinc boinc     21747 Nov 30 17:11 stderr.txt
[2025-11-30 17:11:25] No HITS result produced
[2025-11-30 17:11:25]  *** Contents of shared directory: ***
[2025-11-30 17:11:25] total 292116
[2025-11-30 17:11:25] -rw-r--r--. 2 boinc boinc 298388766 Nov 30 17:08 ATLAS.root_0
[2025-11-30 17:11:25] -rw-r--r--. 2 boinc boinc     15847 Nov 30 17:08 start_atlas.sh
[2025-11-30 17:11:25] -rw-r--r--. 2 boinc boinc    589959 Nov 30 17:08 input.tar.gz
[2025-11-30 17:11:25] -rw-------. 1 boinc boinc    122880 Nov 30 17:11 result.tar.gz
17:11:27 (2840338): run_atlas exited; CPU time 17.195109
17:11:27 (2840338): called boinc_finish(0)

</stderr_txt>
]]>

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