Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:40:25 (30639): wrapper (7.7.26015): starting
23:40:25 (30639): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 23:40:25] Arguments: --nthreads 8
[2025-12-02 23:40:25] Threads: 8
[2025-12-02 23:40:25] Checking for CVMFS
[2025-12-02 23:40:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:40:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:40:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:40:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:40:28] 2.11.2.0 20077 294626 140708 153571 0 85 14167670 25165825 2504 130560 10 140330998 99.873 79184570 2566 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 23:40:28] CVMFS is ok
[2025-12-02 23:40:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:40:28] Checking for apptainer binary...
[2025-12-02 23:40:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:40:28] Running /usr/bin/apptainer --version
[2025-12-02 23:40:28] apptainer version 1.3.2-1.el7
[2025-12-02 23:40:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:41:07] cg-vwn315.simple-grid.lan
[2025-12-02 23:41:07] apptainer works
[2025-12-02 23:41:07] Set ATHENA_PROC_NUMBER=8
[2025-12-02 23:41:07] Set ATHENA_CORE_NUMBER=8
[2025-12-02 23:41:07] Starting ATLAS job with PandaID=6904565512
[2025-12-02 23:41:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:40:26]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:40:26] 2025-12-03 08:39:22,318 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 09:40:26] 2025-12-03 08:39:22,319 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 09:40:26] 2025-12-03 08:39:22,321 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6904565512/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,321 | INFO     | extracted standard info from prmon json
[2025-12-03 09:40:26] 2025-12-03 08:39:22,322 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 09:40:26] 2025-12-03 08:39:22,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 09:40:26] 2025-12-03 08:39:22,322 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 09:40:26] 2025-12-03 08:39:22,322 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 09:40:26] 2025-12-03 08:39:22,334 | INFO     | fitting pss+swap vs Time
[2025-12-03 09:40:26] 2025-12-03 08:39:22,335 | INFO     | sum of square deviations: 59257669200.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,346 | INFO     | sum of deviations: 348991155981.5
[2025-12-03 09:40:26] 2025-12-03 08:39:22,346 | INFO     | mean x: 1764733506.5
[2025-12-03 09:40:26] 2025-12-03 08:39:22,347 | INFO     | mean y: 2523047.046875
[2025-12-03 09:40:26] 2025-12-03 08:39:22,347 | INFO     | intersect: -10390669846.755316
[2025-12-03 09:40:26] 2025-12-03 08:39:22,348 | INFO     | chi2: 5.864164792137218
[2025-12-03 09:40:26] 2025-12-03 08:39:22,349 | INFO     | sum of square deviations: 57727854470.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,359 | INFO     | sum of deviations: 384994502628.9999
[2025-12-03 09:40:26] 2025-12-03 08:39:22,359 | INFO     | mean x: 1764733354.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,359 | INFO     | mean y: 2526608.69352014
[2025-12-03 09:40:26] 2025-12-03 08:39:22,359 | INFO     | intersect: -11766707604.733099
[2025-12-03 09:40:26] 2025-12-03 08:39:22,360 | INFO     | chi2: 5.108482096503222
[2025-12-03 09:40:26] 2025-12-03 08:39:22,360 | INFO     | current chi2=5.108482096503222 (change=12.886450541895233 %)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,360 | INFO     | right removable region: 570
[2025-12-03 09:40:26] 2025-12-03 08:39:22,361 | INFO     | sum of square deviations: 57727854470.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,371 | INFO     | sum of deviations: 154701790425.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,371 | INFO     | mean x: 1764733659.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,372 | INFO     | mean y: 2542404.068301226
[2025-12-03 09:40:26] 2025-12-03 08:39:22,372 | INFO     | intersect: -4726672966.519183
[2025-12-03 09:40:26] 2025-12-03 08:39:22,373 | INFO     | chi2: 1.8497265857605674
[2025-12-03 09:40:26] 2025-12-03 08:39:22,373 | INFO     | current chi2=1.8497265857605674 (change=68.4571179131815 %)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,374 | INFO     | sum of square deviations: 56224598377.5
[2025-12-03 09:40:26] 2025-12-03 08:39:22,387 | INFO     | sum of deviations: 68259050142.00001
[2025-12-03 09:40:26] 2025-12-03 08:39:22,387 | INFO     | mean x: 1764733811.5
[2025-12-03 09:40:26] 2025-12-03 08:39:22,387 | INFO     | mean y: 2551153.067137809
[2025-12-03 09:40:26] 2025-12-03 08:39:22,388 | INFO     | intersect: -2139910637.7256033
[2025-12-03 09:40:26] 2025-12-03 08:39:22,388 | INFO     | chi2: 0.9280542306246786
[2025-12-03 09:40:26] 2025-12-03 08:39:22,389 | INFO     | current chi2=0.9280542306246786 (change=49.827491383377456 %)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,389 | INFO     | sum of square deviations: 54747668360.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,399 | INFO     | sum of deviations: 48651468294.00001
[2025-12-03 09:40:26] 2025-12-03 08:39:22,399 | INFO     | mean x: 1764733964.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,399 | INFO     | mean y: 2553173.565062389
[2025-12-03 09:40:26] 2025-12-03 08:39:22,400 | INFO     | intersect: -1565676142.290517
[2025-12-03 09:40:26] 2025-12-03 08:39:22,400 | INFO     | chi2: 0.8878177258119719
[2025-12-03 09:40:26] 2025-12-03 08:39:22,401 | INFO     | current chi2=0.8878177258119719 (change=4.335576896796566 %)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,401 | INFO     | left removable region: 30
[2025-12-03 09:40:26] 2025-12-03 08:39:22,402 | INFO     | sum of square deviations: 48826794555.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,411 | INFO     | sum of deviations: 40373165919.0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,411 | INFO     | mean x: 1764734238.5
[2025-12-03 09:40:26] 2025-12-03 08:39:22,411 | INFO     | mean y: 2562050.774074074
[2025-12-03 09:40:26] 2025-12-03 08:39:22,411 | INFO     | intersect: -1456634868.9345255
[2025-12-03 09:40:26] 2025-12-03 08:39:22,412 | INFO     | chi2: 0.010579391713186581
[2025-12-03 09:40:26] 2025-12-03 08:39:22,412 | INFO     | current memory leak: 0.83 B/s (using 540 data points, chi2=0.01)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,413 | INFO     | could have reported an average CPU frequency of 1999 MHz (22 samples)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,413 | INFO     | ..............................
[2025-12-03 09:40:26] 2025-12-03 08:39:22,413 | INFO     | . Timing measurements:
[2025-12-03 09:40:26] 2025-12-03 08:39:22,413 | INFO     | . get job = 0 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,414 | INFO     | . initial setup = 4 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,414 | INFO     | . payload setup = 172 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,414 | INFO     | . stage-in = 0 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,414 | INFO     | . payload execution = 35261 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,414 | INFO     | . stage-out = 5 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,414 | INFO     | . log creation = 1 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,414 | INFO     | ..............................
[2025-12-03 09:40:26] 2025-12-03 08:39:22,547 | INFO     | 
[2025-12-03 09:40:26] 2025-12-03 08:39:22,547 | INFO     | job summary report
[2025-12-03 09:40:26] 2025-12-03 08:39:22,547 | INFO     | --------------------------------------------------
[2025-12-03 09:40:26] 2025-12-03 08:39:22,547 | INFO     | PanDA job id: 6904565512
[2025-12-03 09:40:26] 2025-12-03 08:39:22,547 | INFO     | task id: 47523908
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | errors: (none)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | pilot state: finished 
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | transexitcode: 0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | exeerrorcode: 0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | exeerrordiag: 
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | exitcode: 0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | exitmsg: OK
[2025-12-03 09:40:26] 2025-12-03 08:39:22,548 | INFO     | cpuconsumptiontime: 134415 s
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | nevents: 400
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | neventsw: 0
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | pid: 8704
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | pgrp: 8704
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | corecount: 8
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | event service: False
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | sizes: {0: 2283678, 1: 2283933, 12: 2283933, 23: 2283961, 34: 2283989, 44: 2284017, 55: 2284173, 66: 2284201, 77: 2284229, 87: 2284285, 92: 2284575, 98: 2284883, 3
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | --------------------------------------------------
[2025-12-03 09:40:26] 2025-12-03 08:39:22,549 | INFO     | 
[2025-12-03 09:40:26] 2025-12-03 08:39:22,550 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-12-03 09:40:26] 2025-12-03 08:39:22,763 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,764 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,764 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,764 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,766 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,766 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 09:40:26] 2025-12-03 08:39:22,766 | INFO     | job 6904565512 has completed (purged errors)
[2025-12-03 09:40:26] 2025-12-03 08:39:22,766 | INFO     | overall cleanup function is called
[2025-12-03 09:40:26] 2025-12-03 08:39:23,776 | INFO     | --- collectZombieJob: --- 10, [8704]
[2025-12-03 09:40:26] 2025-12-03 08:39:23,776 | INFO     | zombie collector waiting for pid 8704
[2025-12-03 09:40:26] 2025-12-03 08:39:23,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:40:26] 2025-12-03 08:39:23,777 | INFO     | collected zombie processes
[2025-12-03 09:40:26] 2025-12-03 08:39:23,777 | INFO     | will attempt to kill all subprocesses of pid=8704
[2025-12-03 09:40:26] 2025-12-03 08:39:23,903 | INFO     | process IDs to be killed: [8704] (in reverse order)
[2025-12-03 09:40:26] 2025-12-03 08:39:24,505 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:40:26] 2025-12-03 08:39:24,505 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:40:26] 2025-12-03 08:39:24,508 | INFO     | did not find any defunct processes belonging to 8704
[2025-12-03 09:40:26] 2025-12-03 08:39:24,511 | INFO     | did not find any defunct processes belonging to 8704
[2025-12-03 09:40:26] 2025-12-03 08:39:24,591 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:40:26] 2025-12-03 08:39:24,592 | INFO     | ready for new job
[2025-12-03 09:40:26] 2025-12-03 08:39:24,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:40:26] 2025-12-03 08:39:24,595 | INFO     | ***************************************
[2025-12-03 09:40:26] 2025-12-03 08:39:24,595 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:40:26] 2025-12-03 08:39:24,595 | INFO     | ***************************************
[2025-12-03 09:40:26] 2025-12-03 08:39:24,595 | INFO     | 
[2025-12-03 09:40:26] 2025-12-03 08:39:24,596 | INFO     | pilot is running in a VM
[2025-12-03 09:40:26] 2025-12-03 08:39:24,596 | INFO     | architecture information:
[2025-12-03 09:40:26] 2025-12-03 08:39:24,610 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:40:26] 2025-12-03 08:39:24,881 | INFO     | cat /etc/os-release:
[2025-12-03 09:40:26] NAME="CentOS Linux"
[2025-12-03 09:40:26] VERSION="7 (Core)"
[2025-12-03 09:40:26] ID="centos"
[2025-12-03 09:40:26] ID_LIKE="rhel fedora"
[2025-12-03 09:40:26] VERSION_ID="7"
[2025-12-03 09:40:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:40:26] ANSI_COLOR="0;31"
[2025-12-03 09:40:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:40:26] HOME_URL="https://www.centos.org/"
[2025-12-03 09:40:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:40:26] 
[2025-12-03 09:40:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:40:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:40:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:40:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:40:26] 
[2025-12-03 09:40:26] 2025-12-03 08:39:24,881 | INFO     | ***************************************
[2025-12-03 09:40:26] 2025-12-03 08:39:25,384 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-12-03 09:40:26] 2025-12-03 08:39:25,602 | INFO     | sufficient remaining disk space (495997419520 B)
[2025-12-03 09:40:26] 2025-12-03 08:39:25,603 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:40:26] 2025-12-03 08:39:25,603 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:40:26] 2025-12-03 08:39:25,603 | INFO     | update_server=False
[2025-12-03 09:40:26] 2025-12-03 08:39:25,603 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:40:26] 2025-12-03 08:39:25,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:40:26] 2025-12-03 08:39:25,604 | INFO     | aborting loop
[2025-12-03 09:40:26] 2025-12-03 08:39:25,724 | INFO     | all job control threads have been joined
[2025-12-03 09:40:26] 2025-12-03 08:39:25,806 | INFO     | all data control threads have been joined
[2025-12-03 09:40:26] 2025-12-03 08:39:25,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:40:26] 2025-12-03 08:39:26,542 | INFO     | all payload control threads have been joined
[2025-12-03 09:40:26] 2025-12-03 08:39:26,609 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:26,610 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:26,730 | INFO     | [job] control thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:26,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:40:26] 2025-12-03 08:39:26,775 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:26,812 | INFO     | [data] control thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:26,816 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:27,208 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:27,276 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:27,405 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:27,547 | INFO     | [payload] control thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:27,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:40:26] 2025-12-03 08:39:27,883 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:27,937 | INFO     | [job] validate thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:27,962 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:28,567 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:28,774 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:29,860 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:40:26] 2025-12-03 08:39:55,185 | INFO     | PID=2067 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 09:40:26] 2025-12-03 08:39:55,185 | INFO     | .. there are 9 such processes running
[2025-12-03 09:40:26] 2025-12-03 08:39:55,186 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:40:26] 2025-12-03 08:39:55,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:40:26] 2025-12-03 08:39:55,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:40:26] 2025-12-03 08:40:17,451 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:40:26] 2025-12-03 08:40:18,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006627575616)>', '<ExcThread(monitor, started 140006026880768)>']
[2025-12-03 09:40:26] 2025-12-03 08:40:19,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:40:26] 2025-12-03 08:40:19,328 | INFO     | [monitor] control thread has ended
[2025-12-03 09:40:26] 2025-12-03 08:40:23,532 | INFO     | all workflow threads have been joined
[2025-12-03 09:40:26] 2025-12-03 08:40:23,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:40:26] 2025-12-03 08:40:23,532 | INFO     | traces error code: 0
[2025-12-03 09:40:26] 2025-12-03 08:40:23,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:40:26] 2025-12-03 08:40:23,915 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:40:26] 2025-12-03 08:40:23,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:40:26] 2025-12-03 08:40:24,044 [wrapper] pilotpid: 2067
[2025-12-03 09:40:26] 2025-12-03 08:40:24,091 [wrapper] Pilot exit status: 0
[2025-12-03 09:40:26] 2025-12-03 08:40:24,435 [wrapper] pandaids: 6904565512
[2025-12-03 09:40:26] 2025-12-03 08:40:25,415 [wrapper] cleanup supervisor_pilot 15204 2068
[2025-12-03 09:40:26] 2025-12-03 08:40:25,459 [wrapper] Test setup, not cleaning
[2025-12-03 09:40:26] 2025-12-03 08:40:25,519 [wrapper] apfmon messages muted
[2025-12-03 09:40:26] 2025-12-03 08:40:25,586 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:40:26] 2025-12-03 08:40:25,634 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:40:26]  *** Error codes and diagnostics ***
[2025-12-03 09:40:26]     "exeErrorCode": 0,
[2025-12-03 09:40:26]     "exeErrorDiag": "",
[2025-12-03 09:40:26]     "pilotErrorCode": 0,
[2025-12-03 09:40:26]     "pilotErrorDiag": "",
[2025-12-03 09:40:26]  *** Listing of results directory ***
[2025-12-03 09:40:26] total 625368
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 09:40:26] -rwx------. 1 boinc boinc     36292 Nov 30 01:19 runpilot2-wrapper.sh
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:24 queuedata.json
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc       100 Dec  2 23:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:40:26] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 23:40 run_atlas
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc       105 Dec  2 23:40 job.xml
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc      6391 Dec  2 23:40 init_data.xml
[2025-12-03 09:40:26] -rw-r--r--. 2 boinc boinc 298388766 Dec  2 23:40 EVNT.47523904._000001.pool.root.1
[2025-12-03 09:40:26] -rw-r--r--. 2 boinc boinc     15847 Dec  2 23:40 start_atlas.sh
[2025-12-03 09:40:26] drwxrwx--x. 2 boinc boinc        68 Dec  2 23:40 shared
[2025-12-03 09:40:26] -rw-r--r--. 2 boinc boinc    589966 Dec  2 23:40 input.tar.gz
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc         0 Dec  2 23:40 boinc_lockfile
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc      2618 Dec  2 23:41 pandaJob.out
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc    989292 Dec  2 23:44 agis_schedconf.cvmfs.json
[2025-12-03 09:40:26] drwx------. 5 boinc boinc      4096 Dec  2 23:44 pilot3
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc 327054148 Dec  3 09:36 HITS.47523908._000150.pool.root.1
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc       532 Dec  3 09:36 boinc_task_state.xml
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc      1019 Dec  3 09:37 memory_monitor_summary.json
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc   1516240 Dec  3 09:37 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc    763294 Dec  3 09:37 log.47523908._000150.job.log.tgz.1
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc      7772 Dec  3 09:39 heartbeat.json
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc        95 Dec  3 09:39 pilot_heartbeat.json
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc      8192 Dec  3 09:40 boinc_mmap_file
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc        29 Dec  3 09:40 wrapper_checkpoint.txt
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc      4884 Dec  3 09:40 pilotlog.txt
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc   4753421 Dec  3 09:40 log.47523908._000150.job.log.1
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc       357 Dec  3 09:40 output.list
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc       620 Dec  3 09:40 runtime_log
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc   5539840 Dec  3 09:40 result.tar.gz
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc      8833 Dec  3 09:40 runtime_log.err
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc       659 Dec  3 09:40 MghNDmcLkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTTPKDma1RO7n.diag
[2025-12-03 09:40:26] -rw-r--r--. 1 boinc boinc     20872 Dec  3 09:40 stderr.txt
[2025-12-03 09:40:26] HITS file was successfully produced:
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc 327054148 Dec  3 09:36 shared/HITS.pool.root.1
[2025-12-03 09:40:26]  *** Contents of shared directory: ***
[2025-12-03 09:40:26] total 616796
[2025-12-03 09:40:26] -rw-r--r--. 2 boinc boinc 298388766 Dec  2 23:40 ATLAS.root_0
[2025-12-03 09:40:26] -rw-r--r--. 2 boinc boinc     15847 Dec  2 23:40 start_atlas.sh
[2025-12-03 09:40:26] -rw-r--r--. 2 boinc boinc    589966 Dec  2 23:40 input.tar.gz
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc 327054148 Dec  3 09:36 HITS.pool.root.1
[2025-12-03 09:40:26] -rw-------. 1 boinc boinc   5539840 Dec  3 09:40 result.tar.gz
09:40:27 (30639): run_atlas exited; CPU time 134891.461962
09:40:27 (30639): called boinc_finish(0)

</stderr_txt>
]]>

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