Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:02:38 (1412566): wrapper (7.7.26015): starting
17:02:38 (1412566): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 17:02:38] Arguments: --nthreads 12
[2025-11-30 17:02:38] Threads: 12
[2025-11-30 17:02:38] Checking for CVMFS
[2025-11-30 17:02:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 17:02:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 17:02:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 17:02:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 17:02:39] 2.11.5.0 3627452 34589 277100 153499 0 245 33997666 45568001 199 130560 0 329711536 99.814 181549102 26912 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-30 17:02:39] CVMFS is ok
[2025-11-30 17:02:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 17:02:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 17:02:39] Further information can be found at the LHC@home message board.
[2025-11-30 17:02:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 17:02:39] Checking for apptainer binary...
[2025-11-30 17:02:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 17:02:39] Running /usr/bin/apptainer --version
[2025-11-30 17:02:39] apptainer version 1.4.1-1.el9
[2025-11-30 17:02:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 17:02:39] wns0050.triumf.lcg
[2025-11-30 17:02:39] apptainer works
[2025-11-30 17:02:39] Set ATHENA_PROC_NUMBER=12
[2025-11-30 17:02:39] Set ATHENA_CORE_NUMBER=12
[2025-11-30 17:02:39] Starting ATLAS job with PandaID=6904565448
[2025-11-30 17:02:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 17:05:52]  *** The last 200 lines of the pilot log: ***
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | found no stored workdir sizes
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | will not add max space = 0 B to job metrics
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | wrong length of table data, x=[1764550987.0], y=[889.0] (must be same and length>=4)
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | could have reported an average CPU frequency of 3036 MHz (4 samples)
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | ..............................
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | . Timing measurements:
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . get job = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . initial setup = 3 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . payload setup = 3 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . stage-in = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . payload execution = 13 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . stage-out = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . log creation = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | ..............................
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6904565448/pilotlog.txt
[2025-11-30 17:05:52] 2025-12-01 01:05:19,890 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-30 17:05:52] - Log from pilotlog.txt -
[2025-11-30 17:05:52] 2025-12-01 01:05:19,879 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 17:05:52] 2025-12-01 01:05:19,879 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | found no stored workdir sizes
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | will not add max space = 0 B to job metrics
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | wrong length of table data, x=[1764550987.0], y=[889.0] (must be same and length>=4)
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | could have reported an average CPU frequency of 3036 MHz (4 samples)
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | ..............................
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | . Timing measurements:
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . get job = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . initial setup = 3 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . payload setup = 3 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . stage-in = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . payload execution = 13 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . stage-out = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . log creation = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | ..............................
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6904565448/pilotlog.txt
[2025-11-30 17:05:52] 2025-12-01 01:05:19,890 | WARNING  | 
[2025-11-30 17:05:52] [begin log extracts]
[2025-11-30 17:05:52] - Log from pilotlog.txt -
[2025-11-30 17:05:52] 2025-12-01 01:05:19,879 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 17:05:52] 2025-12-01 01:05:19,879 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | found no stored workdir sizes
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | will not add max space = 0 B to job metrics
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | WARNING  | wrong length of table data, x=[1764550987.0], y=[889.0] (must be same and length>=4)
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | could have reported an average CPU frequency of 3036 MHz (4 samples)
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | ..............................
[2025-11-30 17:05:52] 2025-12-01 01:05:19,880 | INFO     | . Timing measurements:
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . get job = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . initial setup = 3 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . payload setup = 3 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . stage-in = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . payload execution = 13 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . stage-out = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | . log creation = 0 s
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | ..............................
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 17:05:52] 2025-12-01 01:05:19,881 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6904565448/pilotlog.txt
[2025-11-30 17:05:52] [end log extracts]
[2025-11-30 17:05:52] 2025-12-01 01:05:19,890 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-11-30 17:05:52] 2025-12-01 01:05:19,891 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-30 17:05:52] 2025-12-01 01:05:20,106 | INFO     | 
[2025-11-30 17:05:52] 2025-12-01 01:05:20,106 | INFO     | job summary report
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | --------------------------------------------------
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | PanDA job id: 6904565448
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | task id: 47523877
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-30 17:03:12,893 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | pilot state: failed 
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | transexitcode: 65
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | exeerrorcode: 65
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | exitcode: 65
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | cpuconsumptiontime: 14 s
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | nevents: 0
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | neventsw: 0
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | pid: 1423066
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | pgrp: 1423066
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | corecount: 12
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | event service: False
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | sizes: {0: 2283926, 3: 2284188, 11: 2284216, 20: 2307328, 21: 2311648, 140: 2311786}
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | --------------------------------------------------
[2025-11-30 17:05:52] 2025-12-01 01:05:20,107 | INFO     | 
[2025-11-30 17:05:52] 2025-12-01 01:05:20,108 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | job 6904565448 has completed (purged errors)
[2025-11-30 17:05:52] 2025-12-01 01:05:20,121 | INFO     | overall cleanup function is called
[2025-11-30 17:05:52] 2025-12-01 01:05:21,127 | INFO     | --- collectZombieJob: --- 10, [1423066]
[2025-11-30 17:05:52] 2025-12-01 01:05:21,127 | INFO     | zombie collector waiting for pid 1423066
[2025-11-30 17:05:52] 2025-12-01 01:05:21,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 17:05:52] 2025-12-01 01:05:21,128 | INFO     | collected zombie processes
[2025-11-30 17:05:52] 2025-12-01 01:05:21,128 | INFO     | will attempt to kill all subprocesses of pid=1423066
[2025-11-30 17:05:52] 2025-12-01 01:05:21,218 | INFO     | process IDs to be killed: [1423066] (in reverse order)
[2025-11-30 17:05:52] 2025-12-01 01:05:21,250 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 17:05:52] 2025-12-01 01:05:21,250 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 17:05:52] 2025-12-01 01:05:21,253 | INFO     | did not find any defunct processes belonging to 1423066
[2025-11-30 17:05:52] 2025-12-01 01:05:21,255 | INFO     | did not find any defunct processes belonging to 1423066
[2025-11-30 17:05:52] 2025-12-01 01:05:21,256 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 17:05:52] 2025-12-01 01:05:21,256 | INFO     | ready for new job
[2025-11-30 17:05:52] 2025-12-01 01:05:21,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 17:05:52] 2025-12-01 01:05:21,257 | INFO     | ***************************************
[2025-11-30 17:05:52] 2025-12-01 01:05:21,257 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 17:05:52] 2025-12-01 01:05:21,257 | INFO     | ***************************************
[2025-11-30 17:05:52] 2025-12-01 01:05:21,257 | INFO     | 
[2025-11-30 17:05:52] 2025-12-01 01:05:21,259 | INFO     | architecture information:
[2025-11-30 17:05:52] 2025-12-01 01:05:21,259 | INFO     | executing command: cat /etc/os-release
[2025-11-30 17:05:52] 2025-12-01 01:05:21,265 | INFO     | cat /etc/os-release:
[2025-11-30 17:05:52] NAME="CentOS Linux"
[2025-11-30 17:05:52] VERSION="7 (Core)"
[2025-11-30 17:05:52] ID="centos"
[2025-11-30 17:05:52] ID_LIKE="rhel fedora"
[2025-11-30 17:05:52] VERSION_ID="7"
[2025-11-30 17:05:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 17:05:52] ANSI_COLOR="0;31"
[2025-11-30 17:05:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 17:05:52] HOME_URL="https://www.centos.org/"
[2025-11-30 17:05:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 17:05:52] 
[2025-11-30 17:05:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 17:05:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 17:05:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 17:05:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 17:05:52] 
[2025-11-30 17:05:52] 2025-12-01 01:05:21,265 | INFO     | ***************************************
[2025-11-30 17:05:52] 2025-12-01 01:05:21,768 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-30 17:05:52] 2025-12-01 01:05:21,775 | INFO     | sufficient remaining disk space (2242367193088 B)
[2025-11-30 17:05:52] 2025-12-01 01:05:21,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 17:05:52] 2025-12-01 01:05:21,776 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 17:05:52] 2025-12-01 01:05:21,776 | INFO     | update_server=False
[2025-11-30 17:05:52] 2025-12-01 01:05:21,776 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 17:05:52] 2025-12-01 01:05:21,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 17:05:52] 2025-12-01 01:05:21,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 17:05:52] 2025-12-01 01:05:21,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 17:05:52] 2025-12-01 01:05:21,777 | INFO     | aborting loop
[2025-11-30 17:05:52] 2025-12-01 01:05:21,939 | INFO     | all data control threads have been joined
[2025-11-30 17:05:52] 2025-12-01 01:05:22,781 | INFO     | [job] retrieve thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:22,781 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:22,782 | INFO     | [job] queue monitor thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:22,782 | INFO     | [job] job monitor thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:22,809 | INFO     | all payload control threads have been joined
[2025-11-30 17:05:52] 2025-12-01 01:05:22,858 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:22,944 | INFO     | [data] control thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:23,261 | INFO     | all job control threads have been joined
[2025-11-30 17:05:52] 2025-12-01 01:05:23,270 | INFO     | [payload] failed_post thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:23,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 17:05:52] 2025-12-01 01:05:23,782 | INFO     | [data] copytool_out thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:23,815 | INFO     | [payload] control thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:23,949 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:24,129 | INFO     | [data] copytool_in thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:24,161 | INFO     | [job] validate thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:24,265 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:24,267 | INFO     | [job] control thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:24,324 | INFO     | [payload] validate_post thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:27,733 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 17:05:52] 2025-12-01 01:05:46,379 | INFO     | [monitor] cgroup control has ended
[2025-11-30 17:05:52] 2025-12-01 01:05:47,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666188506944)>', '<ExcThread(monitor, started 140665656690432)>']
[2025-11-30 17:05:52] 2025-12-01 01:05:51,499 | INFO     | PID=1416248 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 17:05:52] 2025-12-01 01:05:51,499 | INFO     | .. there are 2 such processes running
[2025-11-30 17:05:52] 2025-12-01 01:05:51,500 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 17:05:52] 2025-12-01 01:05:51,500 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 17:05:52] 2025-12-01 01:05:51,500 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 17:05:52] 2025-12-01 01:05:51,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 17:05:52] 2025-12-01 01:05:51,500 | INFO     | [monitor] control thread has ended
[2025-11-30 17:05:52] 2025-12-01 01:05:52,602 | INFO     | all workflow threads have been joined
[2025-11-30 17:05:52] 2025-12-01 01:05:52,602 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 17:05:52] 2025-12-01 01:05:52,602 | INFO     | traces error code: 0
[2025-11-30 17:05:52] 2025-12-01 01:05:52,603 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 17:05:52] 2025-12-01 01:05:52,676 [wrapper] ==== pilot stdout END ====
[2025-11-30 17:05:52] 2025-12-01 01:05:52,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 17:05:52] 2025-12-01 01:05:52,679 [wrapper] pilotpid: 1416248
[2025-11-30 17:05:52] 2025-12-01 01:05:52,680 [wrapper] Pilot exit status: 0
[2025-11-30 17:05:52] 2025-12-01 01:05:52,686 [wrapper] pandaids: 6904565448
[2025-11-30 17:05:52] 2025-12-01 01:05:52,707 [wrapper] cleanup supervisor_pilot 1416254 1416249
[2025-11-30 17:05:52] 2025-12-01 01:05:52,708 [wrapper] Test setup, not cleaning
[2025-11-30 17:05:52] 2025-12-01 01:05:52,710 [wrapper] apfmon messages muted
[2025-11-30 17:05:52] 2025-12-01 01:05:52,711 [wrapper] ==== wrapper stdout END ====
[2025-11-30 17:05:52] 2025-12-01 01:05:52,713 [wrapper] ==== wrapper stderr END ====
[2025-11-30 17:05:52]  *** Error codes and diagnostics ***
[2025-11-30 17:05:52]     "exeErrorCode": 65,
[2025-11-30 17:05:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-11-30 17:05:52]     "pilotErrorCode": 1305,
[2025-11-30 17:05:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-11-30 17:05:52]  *** Listing of results directory ***
[2025-11-30 17:05:52] total 300256
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc    576529 Nov 29 16:16 pilot3.tar.gz
[2025-11-30 17:05:52] -rwx------. 1 boinc boinc     36292 Nov 29 16:19 runpilot2-wrapper.sh
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc      5112 Nov 29 16:24 queuedata.json
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc       100 Nov 30 17:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 17:05:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 17:02 run_atlas
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc       105 Nov 30 17:02 job.xml
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc      6596 Nov 30 17:02 init_data.xml
[2025-11-30 17:05:52] -rw-r--r--. 2 boinc boinc 303339778 Nov 30 17:02 EVNT.47523873._000004.pool.root.1
[2025-11-30 17:05:52] -rw-r--r--. 2 boinc boinc     15847 Nov 30 17:02 start_atlas.sh
[2025-11-30 17:05:52] drwxrwx--x. 2 boinc boinc      4096 Nov 30 17:02 shared
[2025-11-30 17:05:52] -rw-r--r--. 2 boinc boinc    589976 Nov 30 17:02 input.tar.gz
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc         0 Nov 30 17:02 boinc_lockfile
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc      2642 Nov 30 17:02 pandaJob.out
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc    993253 Nov 30 17:02 agis_schedconf.cvmfs.json
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc   1516240 Nov 30 17:02 agis_ddmendpoints.agis.ALL.json
[2025-11-30 17:05:52] drwx------. 5 boinc boinc      4096 Nov 30 17:02 pilot3
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc       522 Nov 30 17:03 boinc_task_state.xml
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc       944 Nov 30 17:03 memory_monitor_summary.json
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc     20892 Nov 30 17:03 log.47523877._000211.job.log.tgz.1
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc      8388 Nov 30 17:05 heartbeat.json
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc        22 Nov 30 17:05 wrapper_checkpoint.txt
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc      8192 Nov 30 17:05 boinc_mmap_file
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc        95 Nov 30 17:05 pilot_heartbeat.json
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc      4822 Nov 30 17:05 pilotlog.txt
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc     84594 Nov 30 17:05 log.47523877._000211.job.log.1
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc       188 Nov 30 17:05 output.list
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc       620 Nov 30 17:05 runtime_log
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc    122880 Nov 30 17:05 result.tar.gz
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc       644 Nov 30 17:05 sQzLDmbLkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTSPKDm096w0m.diag
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc      8636 Nov 30 17:05 runtime_log.err
[2025-11-30 17:05:52] -rw-r--r--. 1 boinc boinc     21740 Nov 30 17:05 stderr.txt
[2025-11-30 17:05:52] No HITS result produced
[2025-11-30 17:05:52]  *** Contents of shared directory: ***
[2025-11-30 17:05:52] total 296952
[2025-11-30 17:05:52] -rw-r--r--. 2 boinc boinc 303339778 Nov 30 17:02 ATLAS.root_0
[2025-11-30 17:05:52] -rw-r--r--. 2 boinc boinc     15847 Nov 30 17:02 start_atlas.sh
[2025-11-30 17:05:52] -rw-r--r--. 2 boinc boinc    589976 Nov 30 17:02 input.tar.gz
[2025-11-30 17:05:52] -rw-------. 1 boinc boinc    122880 Nov 30 17:05 result.tar.gz
17:05:54 (1412566): run_atlas exited; CPU time 17.254729
17:05:54 (1412566): called boinc_finish(0)

</stderr_txt>
]]>

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