Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:30:57 (1691695): wrapper (7.7.26015): starting
07:30:57 (1691695): wrapper: running run_atlas (--nthreads 3)
[2025-12-03 07:30:57] Arguments: --nthreads 3
[2025-12-03 07:30:57] Threads: 3
[2025-12-03 07:30:57] Checking for CVMFS
[2025-12-03 07:31:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 07:31:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 07:31:57] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 07:31:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 07:31:57] 2.13.3.0 1691914 0 31200 153571 3 1 42186458 52428801 0 130560 0 0 0.000 1293 58 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-03 07:31:57] CVMFS is ok
[2025-12-03 07:31:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 07:31:57] Checking for apptainer binary...
[2025-12-03 07:31:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 07:31:57] Running /usr/bin/apptainer --version
[2025-12-03 07:31:57] apptainer version 1.4.4-1.el9
[2025-12-03 07:31:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 07:31:57] testio004
[2025-12-03 07:31:57] apptainer works
[2025-12-03 07:31:58] Set ATHENA_PROC_NUMBER=3
[2025-12-03 07:31:58] Set ATHENA_CORE_NUMBER=3
[2025-12-03 07:31:58] Starting ATLAS job with PandaID=6905270771
[2025-12-03 07:31:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 18:17:04]  *** The last 200 lines of the pilot log: ***
[2025-12-03 18:17:04] 2025-12-03 09:16:20,959 | INFO     | monitor loop #2864: job 0:6905270771 is in state 'finished'
[2025-12-03 18:17:04] 2025-12-03 09:16:20,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 18:17:04] 2025-12-03 09:16:22,829 | INFO     | time since job start (38562s) is within the limit (172800.0s)
[2025-12-03 18:17:04] 2025-12-03 09:16:23,462 | INFO     | monitor loop #2865: job 0:6905270771 is in state 'finished'
[2025-12-03 18:17:04] 2025-12-03 09:16:23,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 18:17:04] 2025-12-03 09:16:24,833 | INFO     | time since job start (38564s) is within the limit (172800.0s)
[2025-12-03 18:17:04] 2025-12-03 09:16:25,964 | INFO     | monitor loop #2866: job 0:6905270771 is in state 'finished'
[2025-12-03 18:17:04] 2025-12-03 09:16:25,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 18:17:04] 2025-12-03 09:16:26,839 | INFO     | time since job start (38566s) is within the limit (172800.0s)
[2025-12-03 18:17:04] 2025-12-03 09:16:27,883 | INFO     | PID=1695973 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 18:17:04] 2025-12-03 09:16:28,466 | INFO     | monitor loop #2867: job 0:6905270771 is in state 'finished'
[2025-12-03 18:17:04] 2025-12-03 09:16:28,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 18:17:04] 2025-12-03 09:16:28,883 | INFO     | time since job start (38568s) is within the limit (172800.0s)
[2025-12-03 18:17:04] 2025-12-03 09:16:30,884 | INFO     | time since job start (38570s) is within the limit (172800.0s)
[2025-12-03 18:17:04] 2025-12-03 09:16:30,969 | INFO     | monitor loop #2868: job 0:6905270771 is in state 'finished'
[2025-12-03 18:17:04] 2025-12-03 09:16:30,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,688 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 18:17:04] 2025-12-03 09:16:31,688 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3658.06675
[2025-12-03 18:17:04] 2025-12-03 09:16:31,689 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6905270771/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,689 | INFO     | extracted standard info from prmon json
[2025-12-03 18:17:04] 2025-12-03 09:16:31,689 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 18:17:04] 2025-12-03 09:16:31,689 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 18:17:04] 2025-12-03 09:16:31,693 | INFO     | fitting pss+swap vs Time
[2025-12-03 18:17:04] 2025-12-03 09:16:31,694 | INFO     | sum of square deviations: 76433487383.0817
[2025-12-03 18:17:04] 2025-12-03 09:16:31,698 | INFO     | sum of deviations: 1748965899531.0283
[2025-12-03 18:17:04] 2025-12-03 09:16:31,698 | INFO     | mean x: 1764734193.0382776
[2025-12-03 18:17:04] 2025-12-03 09:16:31,698 | INFO     | mean y: 2433195.582137161
[2025-12-03 18:17:04] 2025-12-03 09:16:31,698 | INFO     | intersect: -40378557271.21596
[2025-12-03 18:17:04] 2025-12-03 09:16:31,698 | INFO     | chi2: 39.06637484999996
[2025-12-03 18:17:04] 2025-12-03 09:16:31,699 | INFO     | sum of square deviations: 74619497900.5739
[2025-12-03 18:17:04] 2025-12-03 09:16:31,703 | INFO     | sum of deviations: 1906789374012.464
[2025-12-03 18:17:04] 2025-12-03 09:16:31,703 | INFO     | mean x: 1764734040.5385852
[2025-12-03 18:17:04] 2025-12-03 09:16:31,703 | INFO     | mean y: 2446466.9807073954
[2025-12-03 18:17:04] 2025-12-03 09:16:31,703 | INFO     | intersect: -45092685651.71418
[2025-12-03 18:17:04] 2025-12-03 09:16:31,703 | INFO     | chi2: 36.82922956446736
[2025-12-03 18:17:04] 2025-12-03 09:16:31,703 | INFO     | current chi2=36.82922956446736 (change=5.726523881784237 %)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,703 | INFO     | right removable region: 621
[2025-12-03 18:17:04] 2025-12-03 09:16:31,704 | INFO     | sum of square deviations: 74619483260.57388
[2025-12-03 18:17:04] 2025-12-03 09:16:31,707 | INFO     | sum of deviations: 1517865267068.937
[2025-12-03 18:17:04] 2025-12-03 09:16:31,707 | INFO     | mean x: 1764734345.5385852
[2025-12-03 18:17:04] 2025-12-03 09:16:31,707 | INFO     | mean y: 2452623.81511254
[2025-12-03 18:17:04] 2025-12-03 09:16:31,707 | INFO     | intersect: -35894726660.35097
[2025-12-03 18:17:04] 2025-12-03 09:16:31,708 | INFO     | chi2: 32.804718171579275
[2025-12-03 18:17:04] 2025-12-03 09:16:31,708 | INFO     | current chi2=32.804718171579275 (change=16.0282511557908 %)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,708 | INFO     | left removable region: 10
[2025-12-03 18:17:04] 2025-12-03 09:16:31,708 | INFO     | sum of square deviations: 70730200639.05634
[2025-12-03 18:17:04] 2025-12-03 09:16:31,712 | INFO     | sum of deviations: 1481725357774.542
[2025-12-03 18:17:04] 2025-12-03 09:16:31,717 | INFO     | mean x: 1764734315.03928
[2025-12-03 18:17:04] 2025-12-03 09:16:31,717 | INFO     | mean y: 2488618.6857610475
[2025-12-03 18:17:04] 2025-12-03 09:16:31,717 | INFO     | intersect: -36966890242.15547
[2025-12-03 18:17:04] 2025-12-03 09:16:31,717 | INFO     | chi2: 24.169841619956504
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | current memory leak: 20.95 B/s (using 611 data points, chi2=24.17)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | could have reported an average CPU frequency of 3606 MHz (24 samples)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | ..............................
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | . Timing measurements:
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | . get job = 0 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | . initial setup = 5 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | . payload setup = 262 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | . stage-in = 0 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | . payload execution = 38222 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,718 | INFO     | . stage-out = 9 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,721 | INFO     | . log creation = 0 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,721 | INFO     | ..............................
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | 
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | job summary report
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | --------------------------------------------------
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | PanDA job id: 6905270771
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | task id: 47538113
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | errors: (none)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | pilot state: finished 
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | transexitcode: 0
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | exeerrorcode: 0
[2025-12-03 18:17:04] 2025-12-03 09:16:31,817 | INFO     | exeerrordiag: 
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | exitcode: 0
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | exitmsg: OK
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | cpuconsumptiontime: 96888 s
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | nevents: 1000
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | neventsw: 0
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | pid: 1703167
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | pgrp: 1703167
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | corecount: 3
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | event service: False
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | sizes: {0: 2284400, 3: 2284662, 11: 2284690, 38488: 2346215, 38489: 2346214, 38499: 2355292, 38500: 2355476, 38558: 2355722}
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | --------------------------------------------------
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | 
[2025-12-03 18:17:04] 2025-12-03 09:16:31,818 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-12-03 18:17:04] 2025-12-03 09:16:31,828 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,828 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | job 6905270771 has completed (purged errors)
[2025-12-03 18:17:04] 2025-12-03 09:16:31,829 | INFO     | overall cleanup function is called
[2025-12-03 18:17:04] 2025-12-03 09:16:32,837 | INFO     | --- collectZombieJob: --- 10, [1703167]
[2025-12-03 18:17:04] 2025-12-03 09:16:32,837 | INFO     | zombie collector waiting for pid 1703167
[2025-12-03 18:17:04] 2025-12-03 09:16:32,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 18:17:04] 2025-12-03 09:16:32,837 | INFO     | collected zombie processes
[2025-12-03 18:17:04] 2025-12-03 09:16:32,838 | INFO     | will attempt to kill all subprocesses of pid=1703167
[2025-12-03 18:17:04] 2025-12-03 09:16:32,869 | INFO     | process IDs to be killed: [1703167] (in reverse order)
[2025-12-03 18:17:04] 2025-12-03 09:16:32,888 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 18:17:04] 2025-12-03 09:16:32,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 18:17:04] 2025-12-03 09:16:32,889 | INFO     | did not find any defunct processes belonging to 1703167
[2025-12-03 18:17:04] 2025-12-03 09:16:32,891 | INFO     | did not find any defunct processes belonging to 1703167
[2025-12-03 18:17:04] 2025-12-03 09:16:32,892 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 18:17:04] 2025-12-03 09:16:32,892 | INFO     | ready for new job
[2025-12-03 18:17:04] 2025-12-03 09:16:32,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 18:17:04] 2025-12-03 09:16:32,893 | INFO     | ***************************************
[2025-12-03 18:17:04] 2025-12-03 09:16:32,893 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 18:17:04] 2025-12-03 09:16:32,893 | INFO     | ***************************************
[2025-12-03 18:17:04] 2025-12-03 09:16:32,893 | INFO     | 
[2025-12-03 18:17:04] 2025-12-03 09:16:32,894 | INFO     | architecture information:
[2025-12-03 18:17:04] 2025-12-03 09:16:32,894 | INFO     | executing command: cat /etc/os-release
[2025-12-03 18:17:04] 2025-12-03 09:16:32,901 | INFO     | cat /etc/os-release:
[2025-12-03 18:17:04] NAME="CentOS Linux"
[2025-12-03 18:17:04] VERSION="7 (Core)"
[2025-12-03 18:17:04] ID="centos"
[2025-12-03 18:17:04] ID_LIKE="rhel fedora"
[2025-12-03 18:17:04] VERSION_ID="7"
[2025-12-03 18:17:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 18:17:04] ANSI_COLOR="0;31"
[2025-12-03 18:17:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 18:17:04] HOME_URL="https://www.centos.org/"
[2025-12-03 18:17:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 18:17:04] 
[2025-12-03 18:17:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 18:17:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 18:17:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 18:17:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 18:17:04] 
[2025-12-03 18:17:04] 2025-12-03 09:16:32,901 | INFO     | ***************************************
[2025-12-03 18:17:04] 2025-12-03 09:16:33,403 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | INFO     | sufficient remaining disk space (320764641280 B)
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | INFO     | update_server=False
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:17:04] 2025-12-03 09:16:33,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 18:17:04] 2025-12-03 09:16:33,472 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 18:17:04] 2025-12-03 09:16:33,472 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 18:17:04] 2025-12-03 09:16:33,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:17:04] 2025-12-03 09:16:33,473 | INFO     | will abort loop
[2025-12-03 18:17:04] 2025-12-03 09:16:33,607 | INFO     | all job control threads have been joined
[2025-12-03 18:17:04] 2025-12-03 09:16:33,740 | INFO     | all data control threads have been joined
[2025-12-03 18:17:04] 2025-12-03 09:16:34,416 | INFO     | [job] retrieve thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:34,418 | INFO     | [job] queue monitor thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:34,477 | INFO     | [job] job monitor thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:34,612 | INFO     | [job] control thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:34,621 | INFO     | all payload control threads have been joined
[2025-12-03 18:17:04] 2025-12-03 09:16:34,623 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:34,746 | INFO     | [data] control thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:34,926 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:34,968 | INFO     | [payload] failed_post thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:35,305 | INFO     | [data] copytool_in thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:35,343 | INFO     | [job] validate thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:35,416 | INFO     | [data] copytool_out thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:35,425 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:35,437 | INFO     | [payload] validate_post thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:35,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:35,626 | INFO     | [payload] control thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:37,418 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 18:17:04] 2025-12-03 09:16:45,703 | INFO     | [monitor] cgroup control has ended
[2025-12-03 18:17:04] 2025-12-03 09:16:47,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139772292884288)>', '<ExcThread(monitor, started 139771556902656)>']
[2025-12-03 18:17:04] 2025-12-03 09:16:52,054 | INFO     | all workflow threads have been joined
[2025-12-03 18:17:04] 2025-12-03 09:16:52,054 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 18:17:04] 2025-12-03 09:16:52,055 | INFO     | traces error code: 0
[2025-12-03 18:17:04] 2025-12-03 09:16:52,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 18:17:04] 2025-12-03 09:17:03,974 | INFO     | PID=1695973 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 18:17:04] 2025-12-03 09:17:03,975 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 18:17:04] 2025-12-03 09:17:03,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 18:17:04] 2025-12-03 09:17:03,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 18:17:04] 2025-12-03 09:17:03,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 18:17:04] 2025-12-03 09:17:03,975 | INFO     | [monitor] control thread has ended
[2025-12-03 18:17:04] 2025-12-03 09:17:04,033 [wrapper] ==== pilot stdout END ====
[2025-12-03 18:17:04] 2025-12-03 09:17:04,035 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 18:17:04] 2025-12-03 09:17:04,036 [wrapper] pilotpid: 1695973
[2025-12-03 18:17:04] 2025-12-03 09:17:04,038 [wrapper] Pilot exit status: 0
[2025-12-03 18:17:04] 2025-12-03 09:17:04,044 [wrapper] pandaids: 6905270771
[2025-12-03 18:17:04] 2025-12-03 09:17:04,056 [wrapper] cleanup supervisor_pilot 1762664 1695974
[2025-12-03 18:17:04] 2025-12-03 09:17:04,057 [wrapper] Test setup, not cleaning
[2025-12-03 18:17:04] 2025-12-03 09:17:04,059 [wrapper] apfmon messages muted
[2025-12-03 18:17:04] 2025-12-03 09:17:04,060 [wrapper] ==== wrapper stdout END ====
[2025-12-03 18:17:04] 2025-12-03 09:17:04,062 [wrapper] ==== wrapper stderr END ====
[2025-12-03 18:17:04]  *** Error codes and diagnostics ***
[2025-12-03 18:17:04]     "exeErrorCode": 0,
[2025-12-03 18:17:04]     "exeErrorDiag": "",
[2025-12-03 18:17:04]     "pilotErrorCode": 0,
[2025-12-03 18:17:04]     "pilotErrorDiag": "",
[2025-12-03 18:17:04]  *** Listing of results directory ***
[2025-12-03 18:17:04] total 1050060
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc    576529 Nov 30 09:16 pilot3.tar.gz
[2025-12-03 18:17:04] -rwx------. 1 boinc boinc     36292 Nov 30 09:19 runpilot2-wrapper.sh
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc      5112 Nov 30 09:24 queuedata.json
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc       100 Dec  3 07:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 18:17:04] -rwxr-xr-x. 1 boinc boinc      7986 Dec  3 07:30 run_atlas
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc       105 Dec  3 07:30 job.xml
[2025-12-03 18:17:04] -rw-r--r--. 2 boinc boinc     15847 Dec  3 07:30 start_atlas.sh
[2025-12-03 18:17:04] drwxrwx--x. 2 boinc boinc        68 Dec  3 07:30 shared
[2025-12-03 18:17:04] -rw-r--r--. 2 boinc boinc    590139 Dec  3 07:30 input.tar.gz
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc      9316 Dec  3 07:30 init_data.xml
[2025-12-03 18:17:04] -rw-r--r--. 2 boinc boinc 374835307 Dec  3 07:30 EVNT.47528871._000098.pool.root.1
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc         0 Dec  3 07:30 boinc_lockfile
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc      2879 Dec  3 07:31 pandaJob.out
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc    989292 Dec  3 07:33 agis_schedconf.cvmfs.json
[2025-12-03 18:17:04] drwx------. 5 boinc boinc      4096 Dec  3 07:33 pilot3
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc       531 Dec  3 18:08 boinc_task_state.xml
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc 683317523 Dec  3 18:14 HITS.47538113._002713.pool.root.1
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc      1024 Dec  3 18:15 memory_monitor_summary.json
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc   1516240 Dec  3 18:15 agis_ddmendpoints.agis.ALL.json
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc   1355248 Dec  3 18:15 log.47538113._002713.job.log.tgz.1
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc     27743 Dec  3 18:16 heartbeat.json
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc      8192 Dec  3 18:16 boinc_mmap_file
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc        28 Dec  3 18:16 wrapper_checkpoint.txt
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc       747 Dec  3 18:17 pilotlog.txt
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc        95 Dec  3 18:17 pilot_heartbeat.json
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc   5231434 Dec  3 18:17 log.47538113._002713.job.log.1
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc       353 Dec  3 18:17 output.list
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc       620 Dec  3 18:17 runtime_log
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc   6625280 Dec  3 18:17 result.tar.gz
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc      8776 Dec  3 18:17 runtime_log.err
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc       650 Dec  3 18:17 lyNNDmqKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmg8LKDmdmZ0rn.diag
[2025-12-03 18:17:04] -rw-r--r--. 1 boinc boinc     21533 Dec  3 18:17 stderr.txt
[2025-12-03 18:17:04] HITS file was successfully produced:
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc 683317523 Dec  3 18:14 shared/HITS.pool.root.1
[2025-12-03 18:17:04]  *** Contents of shared directory: ***
[2025-12-03 18:17:04] total 1040424
[2025-12-03 18:17:04] -rw-r--r--. 2 boinc boinc     15847 Dec  3 07:30 start_atlas.sh
[2025-12-03 18:17:04] -rw-r--r--. 2 boinc boinc    590139 Dec  3 07:30 input.tar.gz
[2025-12-03 18:17:04] -rw-r--r--. 2 boinc boinc 374835307 Dec  3 07:30 ATLAS.root_0
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc 683317523 Dec  3 18:14 HITS.pool.root.1
[2025-12-03 18:17:04] -rw-------. 1 boinc boinc   6625280 Dec  3 18:17 result.tar.gz
18:17:05 (1691695): run_atlas exited; CPU time 96964.218658
18:17:05 (1691695): called boinc_finish(0)

</stderr_txt>
]]>

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