Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:40:34 (4061226): wrapper (7.7.26015): starting
16:40:34 (4061226): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 16:40:34] Arguments: --nthreads 12
[2025-11-30 16:40:34] Threads: 12
[2025-11-30 16:40:34] Checking for CVMFS
[2025-11-30 16:40:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 16:40:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 16:40:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 16:40:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 16:40:34] 2.11.5.0 3753734 64 53812 153499 3 75 33749053 45568001 0 130560 0 983850 99.998 4185 2991 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-30 16:40:34] CVMFS is ok
[2025-11-30 16:40:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 16:40:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 16:40:34] Further information can be found at the LHC@home message board.
[2025-11-30 16:40:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 16:40:34] Checking for apptainer binary...
[2025-11-30 16:40:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 16:40:34] Running /usr/bin/apptainer --version
[2025-11-30 16:40:34] apptainer version 1.4.1-1.el9
[2025-11-30 16:40:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 16:40:34] wns0087.triumf.lcg
[2025-11-30 16:40:34] apptainer works
[2025-11-30 16:40:34] Set ATHENA_PROC_NUMBER=12
[2025-11-30 16:40:34] Set ATHENA_CORE_NUMBER=12
[2025-11-30 16:40:34] Starting ATLAS job with PandaID=6905026935
[2025-11-30 16:40:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 16:44:49]  *** The last 200 lines of the pilot log: ***
[2025-11-30 16:44:49] 2025-12-01 00:44:03,394 | WARNING  | wrong length of table data, x=[1764549665.0], y=[30731.0] (must be same and length>=4)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | could have reported an average CPU frequency of 3195 MHz (4 samples)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | ..............................
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . Timing measurements:
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . get job = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . initial setup = 2 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . payload setup = 6 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . stage-in = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . payload execution = 57 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . stage-out = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . log creation = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | ..............................
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905026935/pilotlog.txt
[2025-11-30 16:44:49] 2025-12-01 00:44:03,403 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-30 16:44:49] - Log from pilotlog.txt -
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905026935/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | INFO     | extracted standard info from prmon json
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 16:44:49] 2025-12-01 00:44:03,394 | WARNING  | wrong length of table data, x=[1764549665.0], y=[30731.0] (must be same and length>=4)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | could have reported an average CPU frequency of 3195 MHz (4 samples)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | ..............................
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . Timing measurements:
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . get job = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . initial setup = 2 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . payload setup = 6 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . stage-in = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . payload execution = 57 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . stage-out = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . log creation = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | ..............................
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905026935/pilotlog.txt
[2025-11-30 16:44:49] 2025-12-01 00:44:03,403 | WARNING  | 
[2025-11-30 16:44:49] [begin log extracts]
[2025-11-30 16:44:49] - Log from pilotlog.txt -
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905026935/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | INFO     | extracted standard info from prmon json
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 16:44:49] 2025-12-01 00:44:03,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 16:44:49] 2025-12-01 00:44:03,394 | WARNING  | wrong length of table data, x=[1764549665.0], y=[30731.0] (must be same and length>=4)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | could have reported an average CPU frequency of 3195 MHz (4 samples)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | ..............................
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . Timing measurements:
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . get job = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . initial setup = 2 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . payload setup = 6 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . stage-in = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . payload execution = 57 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . stage-out = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | . log creation = 0 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | ..............................
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 16:44:49] 2025-12-01 00:44:03,395 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905026935/pilotlog.txt
[2025-11-30 16:44:49] [end log extracts]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,403 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,404 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | 
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | job summary report
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | --------------------------------------------------
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | PanDA job id: 6905026935
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | task id: 47538113
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-30 16:41:55,205 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | pilot state: failed 
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | transexitcode: 65
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | exeerrorcode: 65
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | exitcode: 65
[2025-11-30 16:44:49] 2025-12-01 00:44:03,605 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | cpuconsumptiontime: 52 s
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | nevents: 0
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | neventsw: 0
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | pid: 4072129
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | pgrp: 4072129
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | corecount: 12
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | event service: False
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | sizes: {0: 2284397, 3: 2284659, 11: 2284687, 66: 2308291, 67: 2312581, 69: 2312609, 187: 2312903}
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | --------------------------------------------------
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | 
[2025-11-30 16:44:49] 2025-12-01 00:44:03,606 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-30 16:44:49] 2025-12-01 00:44:03,617 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,617 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,617 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,617 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,617 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,617 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,617 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | job 6905026935 has completed (purged errors)
[2025-11-30 16:44:49] 2025-12-01 00:44:03,618 | INFO     | overall cleanup function is called
[2025-11-30 16:44:49] 2025-12-01 00:44:04,625 | INFO     | --- collectZombieJob: --- 10, [4072129]
[2025-11-30 16:44:49] 2025-12-01 00:44:04,626 | INFO     | zombie collector waiting for pid 4072129
[2025-11-30 16:44:49] 2025-12-01 00:44:04,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 16:44:49] 2025-12-01 00:44:04,626 | INFO     | collected zombie processes
[2025-11-30 16:44:49] 2025-12-01 00:44:04,626 | INFO     | will attempt to kill all subprocesses of pid=4072129
[2025-11-30 16:44:49] 2025-12-01 00:44:04,711 | INFO     | process IDs to be killed: [4072129] (in reverse order)
[2025-11-30 16:44:49] 2025-12-01 00:44:04,742 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 16:44:49] 2025-12-01 00:44:04,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 16:44:49] 2025-12-01 00:44:04,745 | INFO     | did not find any defunct processes belonging to 4072129
[2025-11-30 16:44:49] 2025-12-01 00:44:04,747 | INFO     | did not find any defunct processes belonging to 4072129
[2025-11-30 16:44:49] 2025-12-01 00:44:04,748 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 16:44:49] 2025-12-01 00:44:04,748 | INFO     | ready for new job
[2025-11-30 16:44:49] 2025-12-01 00:44:04,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 16:44:49] 2025-12-01 00:44:04,749 | INFO     | ***************************************
[2025-11-30 16:44:49] 2025-12-01 00:44:04,749 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 16:44:49] 2025-12-01 00:44:04,749 | INFO     | ***************************************
[2025-11-30 16:44:49] 2025-12-01 00:44:04,749 | INFO     | 
[2025-11-30 16:44:49] 2025-12-01 00:44:04,751 | INFO     | architecture information:
[2025-11-30 16:44:49] 2025-12-01 00:44:04,751 | INFO     | executing command: cat /etc/os-release
[2025-11-30 16:44:49] 2025-12-01 00:44:04,758 | INFO     | cat /etc/os-release:
[2025-11-30 16:44:49] NAME="CentOS Linux"
[2025-11-30 16:44:49] VERSION="7 (Core)"
[2025-11-30 16:44:49] ID="centos"
[2025-11-30 16:44:49] ID_LIKE="rhel fedora"
[2025-11-30 16:44:49] VERSION_ID="7"
[2025-11-30 16:44:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 16:44:49] ANSI_COLOR="0;31"
[2025-11-30 16:44:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 16:44:49] HOME_URL="https://www.centos.org/"
[2025-11-30 16:44:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 16:44:49] 
[2025-11-30 16:44:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 16:44:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 16:44:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 16:44:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 16:44:49] 
[2025-11-30 16:44:49] 2025-12-01 00:44:04,758 | INFO     | ***************************************
[2025-11-30 16:44:49] 2025-12-01 00:44:05,261 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-30 16:44:49] 2025-12-01 00:44:05,268 | INFO     | sufficient remaining disk space (2275610198016 B)
[2025-11-30 16:44:49] 2025-12-01 00:44:05,268 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 16:44:49] 2025-12-01 00:44:05,268 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 16:44:49] 2025-12-01 00:44:05,268 | INFO     | update_server=False
[2025-11-30 16:44:49] 2025-12-01 00:44:05,268 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 16:44:49] 2025-12-01 00:44:05,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 16:44:49] 2025-12-01 00:44:05,473 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 16:44:49] 2025-12-01 00:44:05,473 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 16:44:49] 2025-12-01 00:44:05,474 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 16:44:49] 2025-12-01 00:44:05,474 | INFO     | will abort loop
[2025-11-30 16:44:49] 2025-12-01 00:44:05,947 | INFO     | all data control threads have been joined
[2025-11-30 16:44:49] 2025-12-01 00:44:06,274 | INFO     | [job] retrieve thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:06,274 | INFO     | [job] queue monitor thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:06,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:06,369 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:06,446 | INFO     | all job control threads have been joined
[2025-11-30 16:44:49] 2025-12-01 00:44:06,462 | INFO     | all payload control threads have been joined
[2025-11-30 16:44:49] 2025-12-01 00:44:06,479 | INFO     | [job] job monitor thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:06,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 16:44:49] 2025-12-01 00:44:06,732 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:06,953 | INFO     | [data] control thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:07,006 | INFO     | [payload] failed_post thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:07,093 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:07,451 | INFO     | [job] control thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:07,468 | INFO     | [payload] control thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:07,662 | INFO     | [job] validate thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:07,716 | INFO     | [data] copytool_in thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:07,850 | INFO     | [payload] validate_post thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:08,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 16:44:49] 2025-12-01 00:44:08,564 | INFO     | [data] copytool_out thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:12,321 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 16:44:49] 2025-12-01 00:44:35,356 | INFO     | PID=4064911 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 16:44:49] 2025-12-01 00:44:35,356 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 16:44:49] 2025-12-01 00:44:35,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 16:44:49] 2025-12-01 00:44:35,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 16:44:49] 2025-12-01 00:44:42,031 | INFO     | [monitor] cgroup control has ended
[2025-11-30 16:44:49] 2025-12-01 00:44:43,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518062450496)>', '<ExcThread(monitor, started 140517656467200)>']
[2025-11-30 16:44:49] 2025-12-01 00:44:44,401 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 16:44:49] 2025-12-01 00:44:44,401 | INFO     | [monitor] control thread has ended
[2025-11-30 16:44:49] 2025-12-01 00:44:48,982 | INFO     | all workflow threads have been joined
[2025-11-30 16:44:49] 2025-12-01 00:44:48,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 16:44:49] 2025-12-01 00:44:48,982 | INFO     | traces error code: 0
[2025-11-30 16:44:49] 2025-12-01 00:44:48,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 16:44:49] 2025-12-01 00:44:49,052 [wrapper] ==== pilot stdout END ====
[2025-11-30 16:44:49] 2025-12-01 00:44:49,053 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 16:44:49] 2025-12-01 00:44:49,055 [wrapper] pilotpid: 4064911
[2025-11-30 16:44:49] 2025-12-01 00:44:49,056 [wrapper] Pilot exit status: 0
[2025-11-30 16:44:49] 2025-12-01 00:44:49,062 [wrapper] pandaids: 6905026935
[2025-11-30 16:44:49] 2025-12-01 00:44:49,083 [wrapper] cleanup supervisor_pilot 4064917 4064912
[2025-11-30 16:44:49] 2025-12-01 00:44:49,085 [wrapper] Test setup, not cleaning
[2025-11-30 16:44:49] 2025-12-01 00:44:49,087 [wrapper] apfmon messages muted
[2025-11-30 16:44:49] 2025-12-01 00:44:49,089 [wrapper] ==== wrapper stdout END ====
[2025-11-30 16:44:49] 2025-12-01 00:44:49,090 [wrapper] ==== wrapper stderr END ====
[2025-11-30 16:44:49]  *** Error codes and diagnostics ***
[2025-11-30 16:44:49]     "exeErrorCode": 65,
[2025-11-30 16:44:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-30 16:44:49]     "pilotErrorCode": 1305,
[2025-11-30 16:44:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-30 16:44:49]  *** Listing of results directory ***
[2025-11-30 16:44:49] total 372096
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc    576529 Nov 29 16:16 pilot3.tar.gz
[2025-11-30 16:44:49] -rwx------. 1 boinc boinc     36292 Nov 29 16:18 runpilot2-wrapper.sh
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc      5112 Nov 29 16:23 queuedata.json
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc       100 Nov 30 16:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 16:44:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 16:40 run_atlas
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc       105 Nov 30 16:40 job.xml
[2025-11-30 16:44:49] -rw-r--r--. 2 boinc boinc 376835160 Nov 30 16:40 EVNT.47528871._000048.pool.root.1
[2025-11-30 16:44:49] drwxrwx--x. 2 boinc boinc      4096 Nov 30 16:40 shared
[2025-11-30 16:44:49] -rw-r--r--. 2 boinc boinc    590137 Nov 30 16:40 input.tar.gz
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc      6597 Nov 30 16:40 init_data.xml
[2025-11-30 16:44:49] -rw-r--r--. 2 boinc boinc     15847 Nov 30 16:40 start_atlas.sh
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc         0 Nov 30 16:40 boinc_lockfile
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc      2879 Nov 30 16:40 pandaJob.out
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc    993253 Nov 30 16:40 agis_schedconf.cvmfs.json
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc   1516240 Nov 30 16:40 agis_ddmendpoints.agis.ALL.json
[2025-11-30 16:44:49] drwx------. 5 boinc boinc      4096 Nov 30 16:40 pilot3
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc       523 Nov 30 16:41 boinc_task_state.xml
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc       956 Nov 30 16:41 memory_monitor_summary.json
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc     48952 Nov 30 16:42 log.47538113._002161.job.log.tgz.1
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc        95 Nov 30 16:43 pilot_heartbeat.json
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc      9893 Nov 30 16:44 heartbeat.json
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc      8192 Nov 30 16:44 boinc_mmap_file
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc        23 Nov 30 16:44 wrapper_checkpoint.txt
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc      4933 Nov 30 16:44 pilotlog.txt
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc     93565 Nov 30 16:44 log.47538113._002161.job.log.1
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc       186 Nov 30 16:44 output.list
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc       620 Nov 30 16:44 runtime_log
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc    163840 Nov 30 16:44 result.tar.gz
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc      8636 Nov 30 16:44 runtime_log.err
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc       642 Nov 30 16:44 kOzMDmWKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmg5LKDmQ6DG9m.diag
[2025-11-30 16:44:49] -rw-r--r--. 1 boinc boinc     22410 Nov 30 16:44 stderr.txt
[2025-11-30 16:44:49] No HITS result produced
[2025-11-30 16:44:49]  *** Contents of shared directory: ***
[2025-11-30 16:44:49] total 368760
[2025-11-30 16:44:49] -rw-r--r--. 2 boinc boinc 376835160 Nov 30 16:40 ATLAS.root_0
[2025-11-30 16:44:49] -rw-r--r--. 2 boinc boinc    590137 Nov 30 16:40 input.tar.gz
[2025-11-30 16:44:49] -rw-r--r--. 2 boinc boinc     15847 Nov 30 16:40 start_atlas.sh
[2025-11-30 16:44:49] -rw-------. 1 boinc boinc    163840 Nov 30 16:44 result.tar.gz
16:44:50 (4061226): run_atlas exited; CPU time 49.199093
16:44:50 (4061226): called boinc_finish(0)

</stderr_txt>
]]>

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