Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:26 (146232): wrapper (7.7.26015): starting
00:01:26 (146232): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 00:01:26] Arguments: --nthreads 12
[2025-12-01 00:01:26] Threads: 12
[2025-12-01 00:01:26] Checking for CVMFS
[2025-12-01 00:01:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:01:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:01:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:01:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:01:28] 2.13.2.0 5795 40599 248468 153505 0 344 23780803 39288832 6748 16776704 0 31680947 99.559 34370867 36691 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 00:01:28] CVMFS is ok
[2025-12-01 00:01:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:01:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:01:28] Further information can be found at the LHC@home message board.
[2025-12-01 00:01:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:01:28] Checking for apptainer binary...
[2025-12-01 00:01:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:01:28] Running /usr/bin/apptainer --version
[2025-12-01 00:01:28] apptainer version 1.4.4-1.el9
[2025-12-01 00:01:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:01:29] c-210-27.aglt2.org
[2025-12-01 00:01:29] apptainer works
[2025-12-01 00:01:29] Set ATHENA_PROC_NUMBER=12
[2025-12-01 00:01:29] Set ATHENA_CORE_NUMBER=12
[2025-12-01 00:01:29] Starting ATLAS job with PandaID=6905166446
[2025-12-01 00:01:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 00:21:49]  *** The last 200 lines of the pilot log: ***
[2025-12-02 00:21:49] 2025-12-02 05:20:41,578 | INFO     | monitor loop #5235: job 0:6905166446 is in state 'finished'
[2025-12-02 00:21:49] 2025-12-02 05:20:41,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:21:49] 2025-12-02 05:20:42,913 | INFO     | time since job start (87496s) is within the limit (172800.0s)
[2025-12-02 00:21:49] 2025-12-02 05:20:44,109 | INFO     | monitor loop #5236: job 0:6905166446 is in state 'finished'
[2025-12-02 00:21:49] 2025-12-02 05:20:44,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:21:49] 2025-12-02 05:20:44,920 | INFO     | time since job start (87498s) is within the limit (172800.0s)
[2025-12-02 00:21:49] 2025-12-02 05:20:46,624 | INFO     | monitor loop #5237: job 0:6905166446 is in state 'finished'
[2025-12-02 00:21:49] 2025-12-02 05:20:46,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:21:49] 2025-12-02 05:20:46,927 | INFO     | time since job start (87500s) is within the limit (172800.0s)
[2025-12-02 00:21:49] 2025-12-02 05:20:48,934 | INFO     | time since job start (87502s) is within the limit (172800.0s)
[2025-12-02 00:21:49] 2025-12-02 05:20:49,129 | INFO     | monitor loop #5238: job 0:6905166446 is in state 'finished'
[2025-12-02 00:21:49] 2025-12-02 05:20:49,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:21:49] 2025-12-02 05:20:50,354 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 00:21:49] 2025-12-02 05:20:50,413 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1629750000006
[2025-12-02 00:21:49] 2025-12-02 05:20:50,474 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6905166446/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 00:21:49] 2025-12-02 05:20:50,474 | INFO     | extracted standard info from prmon json
[2025-12-02 00:21:49] 2025-12-02 05:20:50,475 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 00:21:49] 2025-12-02 05:20:50,475 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 00:21:49] 2025-12-02 05:20:50,845 | INFO     | fitting pss+swap vs Time
[2025-12-02 00:21:49] 2025-12-02 05:20:50,906 | INFO     | sum of square deviations: 909041466997.9965
[2025-12-02 00:21:49] 2025-12-02 05:20:50,972 | INFO     | time since job start (87504s) is within the limit (172800.0s)
[2025-12-02 00:21:49] 2025-12-02 05:20:51,384 | INFO     | sum of deviations: 5412802197760.86
[2025-12-02 00:21:49] 2025-12-02 05:20:51,384 | INFO     | mean x: 1764609135.1495457
[2025-12-02 00:21:49] 2025-12-02 05:20:51,384 | INFO     | mean y: 4133818.9399021664
[2025-12-02 00:21:49] 2025-12-02 05:20:51,384 | INFO     | intersect: -10503065854.215826
[2025-12-02 00:21:49] 2025-12-02 05:20:51,388 | INFO     | chi2: 24.011381424910297
[2025-12-02 00:21:49] 2025-12-02 05:20:51,391 | INFO     | sum of square deviations: 899555799447.914
[2025-12-02 00:21:49] 2025-12-02 05:20:51,479 | INFO     | sum of deviations: 6171667839478.982
[2025-12-02 00:21:49] 2025-12-02 05:20:51,479 | INFO     | mean x: 1764608982.6956522
[2025-12-02 00:21:49] 2025-12-02 05:20:51,479 | INFO     | mean y: 4146014.129032258
[2025-12-02 00:21:49] 2025-12-02 05:20:51,479 | INFO     | intersect: -12102474291.628963
[2025-12-02 00:21:49] 2025-12-02 05:20:51,482 | INFO     | chi2: 20.262333360666627
[2025-12-02 00:21:49] 2025-12-02 05:20:51,482 | INFO     | current chi2=20.262333360666627 (change=15.61362921149663 %)
[2025-12-02 00:21:49] 2025-12-02 05:20:51,482 | INFO     | right removable region: 1425
[2025-12-02 00:21:49] 2025-12-02 05:20:51,484 | INFO     | sum of square deviations: 899540828061.1388
[2025-12-02 00:21:49] 2025-12-02 05:20:51,534 | INFO     | sum of deviations: 4552756867534.114
[2025-12-02 00:21:49] 2025-12-02 05:20:51,535 | INFO     | mean x: 1764609287.7237027
[2025-12-02 00:21:49] 2025-12-02 05:20:51,535 | INFO     | mean y: 4147629.6093969145
[2025-12-02 00:21:49] 2025-12-02 05:20:51,535 | INFO     | intersect: -8926894522.76808
[2025-12-02 00:21:49] 2025-12-02 05:20:51,537 | INFO     | chi2: 19.39300113670669
[2025-12-02 00:21:49] 2025-12-02 05:20:51,537 | INFO     | current chi2=19.39300113670669 (change=19.234129875644424 %)
[2025-12-02 00:21:49] 2025-12-02 05:20:51,537 | INFO     | left removable region: 10
[2025-12-02 00:21:49] 2025-12-02 05:20:51,539 | INFO     | sum of square deviations: 878890473929.6145
[2025-12-02 00:21:49] 2025-12-02 05:20:51,626 | INFO     | sum of deviations: 4691323739231.157
[2025-12-02 00:21:49] 2025-12-02 05:20:51,626 | INFO     | mean x: 1764609257.3540635
[2025-12-02 00:21:49] 2025-12-02 05:20:51,626 | INFO     | mean y: 4174617.3349823323
[2025-12-02 00:21:49] 2025-12-02 05:20:51,626 | INFO     | intersect: -9414920873.00384
[2025-12-02 00:21:49] 2025-12-02 05:20:51,632 | INFO     | chi2: 11.424889855666132
[2025-12-02 00:21:49] 2025-12-02 05:20:51,633 | INFO     | current memory leak: 5.34 B/s (using 1415 data points, chi2=11.42)
[2025-12-02 00:21:49] 2025-12-02 05:20:51,634 | INFO     | could have reported an average CPU frequency of 2600 MHz (51 samples)
[2025-12-02 00:21:49] 2025-12-02 05:20:51,634 | INFO     | ..............................
[2025-12-02 00:21:49] 2025-12-02 05:20:51,634 | INFO     | . Timing measurements:
[2025-12-02 00:21:49] 2025-12-02 05:20:51,634 | INFO     | . get job = 0 s
[2025-12-02 00:21:49] 2025-12-02 05:20:51,634 | INFO     | . initial setup = 5 s
[2025-12-02 00:21:49] 2025-12-02 05:20:51,634 | INFO     | . payload setup = 65 s
[2025-12-02 00:21:49] 2025-12-02 05:20:51,639 | INFO     | . stage-in = 0 s
[2025-12-02 00:21:49] 2025-12-02 05:20:51,639 | INFO     | . payload execution = 87304 s
[2025-12-02 00:21:49] 2025-12-02 05:20:51,639 | INFO     | . stage-out = 23 s
[2025-12-02 00:21:49] 2025-12-02 05:20:51,639 | INFO     | . log creation = 4 s
[2025-12-02 00:21:49] 2025-12-02 05:20:51,639 | INFO     | ..............................
[2025-12-02 00:21:49] 2025-12-02 05:20:53,485 | INFO     | 
[2025-12-02 00:21:49] 2025-12-02 05:20:53,485 | INFO     | job summary report
[2025-12-02 00:21:49] 2025-12-02 05:20:53,485 | INFO     | --------------------------------------------------
[2025-12-02 00:21:49] 2025-12-02 05:20:53,485 | INFO     | PanDA job id: 6905166446
[2025-12-02 00:21:49] 2025-12-02 05:20:53,485 | INFO     | task id: 47538113
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | errors: (none)
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | pilot state: finished 
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | transexitcode: 0
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | exeerrorcode: 0
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | exeerrordiag: 
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | exitcode: 0
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | exitmsg: OK
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | cpuconsumptiontime: 260165 s
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | nevents: 1000
[2025-12-02 00:21:49] 2025-12-02 05:20:53,486 | INFO     | neventsw: 0
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | pid: 168581
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | pgrp: 168581
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | corecount: 12
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | event service: False
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | sizes: {0: 2284229, 1: 2284428, 12: 2284428, 23: 2284456, 29: 2284746, 34: 2284774, 87377: 2369726, 87378: 2369725, 87401: 2378775, 87403: 2378831, 87448: 2379077}
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | --------------------------------------------------
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | 
[2025-12-02 00:21:49] 2025-12-02 05:20:53,487 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-02 00:21:49] 2025-12-02 05:20:53,820 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 00:21:49] 2025-12-02 05:20:53,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 00:21:49] 2025-12-02 05:20:53,823 | INFO     | job 6905166446 has completed (purged errors)
[2025-12-02 00:21:49] 2025-12-02 05:20:53,823 | INFO     | overall cleanup function is called
[2025-12-02 00:21:49] 2025-12-02 05:20:54,679 | INFO     | PID=150044 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 00:21:49] 2025-12-02 05:20:54,680 | INFO     | .. there are 8 such processes running
[2025-12-02 00:21:49] 2025-12-02 05:20:54,924 | INFO     | --- collectZombieJob: --- 10, [168581]
[2025-12-02 00:21:49] 2025-12-02 05:20:54,924 | INFO     | zombie collector waiting for pid 168581
[2025-12-02 00:21:49] 2025-12-02 05:20:54,924 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 00:21:49] 2025-12-02 05:20:54,924 | INFO     | collected zombie processes
[2025-12-02 00:21:49] 2025-12-02 05:20:54,924 | INFO     | will attempt to kill all subprocesses of pid=168581
[2025-12-02 00:21:49] 2025-12-02 05:20:55,775 | INFO     | process IDs to be killed: [168581] (in reverse order)
[2025-12-02 00:21:49] 2025-12-02 05:20:55,942 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 00:21:49] 2025-12-02 05:20:55,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 00:21:49] 2025-12-02 05:20:55,961 | INFO     | did not find any defunct processes belonging to 168581
[2025-12-02 00:21:49] 2025-12-02 05:20:55,978 | INFO     | did not find any defunct processes belonging to 168581
[2025-12-02 00:21:49] 2025-12-02 05:20:55,983 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 00:21:49] 2025-12-02 05:20:55,983 | INFO     | ready for new job
[2025-12-02 00:21:49] 2025-12-02 05:20:55,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 00:21:49] 2025-12-02 05:20:55,992 | INFO     | ***************************************
[2025-12-02 00:21:49] 2025-12-02 05:20:55,993 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 00:21:49] 2025-12-02 05:20:55,993 | INFO     | ***************************************
[2025-12-02 00:21:49] 2025-12-02 05:20:55,993 | INFO     | 
[2025-12-02 00:21:49] 2025-12-02 05:20:55,999 | INFO     | architecture information:
[2025-12-02 00:21:49] 2025-12-02 05:20:56,000 | INFO     | executing command: cat /etc/os-release
[2025-12-02 00:21:49] 2025-12-02 05:20:56,187 | INFO     | cat /etc/os-release:
[2025-12-02 00:21:49] NAME="CentOS Linux"
[2025-12-02 00:21:49] VERSION="7 (Core)"
[2025-12-02 00:21:49] ID="centos"
[2025-12-02 00:21:49] ID_LIKE="rhel fedora"
[2025-12-02 00:21:49] VERSION_ID="7"
[2025-12-02 00:21:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 00:21:49] ANSI_COLOR="0;31"
[2025-12-02 00:21:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 00:21:49] HOME_URL="https://www.centos.org/"
[2025-12-02 00:21:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 00:21:49] 
[2025-12-02 00:21:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 00:21:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 00:21:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 00:21:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 00:21:49] 
[2025-12-02 00:21:49] 2025-12-02 05:20:56,188 | INFO     | ***************************************
[2025-12-02 00:21:49] 2025-12-02 05:20:56,692 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-02 00:21:49] 2025-12-02 05:20:56,797 | INFO     | sufficient remaining disk space (50514100224 B)
[2025-12-02 00:21:49] 2025-12-02 05:20:56,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 00:21:49] 2025-12-02 05:20:56,798 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 00:21:49] 2025-12-02 05:20:56,798 | INFO     | update_server=False
[2025-12-02 00:21:49] 2025-12-02 05:20:56,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 00:21:49] 2025-12-02 05:20:56,819 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 00:21:49] 2025-12-02 05:20:56,819 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 00:21:49] 2025-12-02 05:20:56,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:21:49] 2025-12-02 05:20:56,819 | INFO     | will abort loop
[2025-12-02 00:21:49] 2025-12-02 05:20:57,076 | INFO     | all job control threads have been joined
[2025-12-02 00:21:49] 2025-12-02 05:20:57,143 | INFO     | all data control threads have been joined
[2025-12-02 00:21:49] 2025-12-02 05:20:57,674 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 00:21:49] 2025-12-02 05:20:57,763 | INFO     | all payload control threads have been joined
[2025-12-02 00:21:49] 2025-12-02 05:20:57,805 | INFO     | [job] retrieve thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:57,825 | INFO     | [job] job monitor thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,082 | INFO     | [job] control thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,096 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,149 | INFO     | [data] control thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,410 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,410 | INFO     | [data] copytool_in thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,411 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,595 | INFO     | [job] validate thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:21:49] 2025-12-02 05:20:58,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:58,769 | INFO     | [payload] control thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:59,063 | INFO     | [payload] failed_post thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:59,075 | INFO     | [payload] validate_post thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:59,662 | INFO     | [job] queue monitor thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:20:59,681 | INFO     | [data] copytool_out thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:21:00,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 00:21:49] 2025-12-02 05:21:04,196 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 00:21:49] 2025-12-02 05:21:13,678 | INFO     | [monitor] cgroup control has ended
[2025-12-02 00:21:49] 2025-12-02 05:21:14,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140037642950464)>', '<ExcThread(monitor, started 140036930529024)>']
[2025-12-02 00:21:49] 2025-12-02 05:21:19,893 | INFO     | all workflow threads have been joined
[2025-12-02 00:21:49] 2025-12-02 05:21:19,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 00:21:49] 2025-12-02 05:21:19,899 | INFO     | traces error code: 0
[2025-12-02 00:21:49] 2025-12-02 05:21:19,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 00:21:49] 2025-12-02 05:21:27,877 | INFO     | PID=150044 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 00:21:49] 2025-12-02 05:21:27,877 | INFO     | .. there are 8 such processes running
[2025-12-02 00:21:49] 2025-12-02 05:21:27,878 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 00:21:49] 2025-12-02 05:21:27,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 00:21:49] 2025-12-02 05:21:27,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 00:21:49] 2025-12-02 05:21:27,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 00:21:49] 2025-12-02 05:21:27,879 | INFO     | [monitor] control thread has ended
[2025-12-02 00:21:49] 2025-12-02 05:21:28,191 [wrapper] ==== pilot stdout END ====
[2025-12-02 00:21:49] 2025-12-02 05:21:28,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 00:21:49] 2025-12-02 05:21:28,241 [wrapper] pilotpid: 150044
[2025-12-02 00:21:49] 2025-12-02 05:21:28,283 [wrapper] Pilot exit status: 0
[2025-12-02 00:21:49] 2025-12-02 05:21:28,490 [wrapper] pandaids: 6905166446
[2025-12-02 00:21:49] 2025-12-02 05:21:29,115 [wrapper] cleanup supervisor_pilot 2259490 150045
[2025-12-02 00:21:49] 2025-12-02 05:21:29,261 [wrapper] Test setup, not cleaning
[2025-12-02 00:21:49] 2025-12-02 05:21:29,303 [wrapper] apfmon messages muted
[2025-12-02 00:21:49] 2025-12-02 05:21:29,354 [wrapper] ==== wrapper stdout END ====
[2025-12-02 00:21:49] 2025-12-02 05:21:29,415 [wrapper] ==== wrapper stderr END ====
[2025-12-02 00:21:49]  *** Error codes and diagnostics ***
[2025-12-02 00:21:49]     "exeErrorCode": 0,
[2025-12-02 00:21:49]     "exeErrorDiag": "",
[2025-12-02 00:21:49]     "pilotErrorCode": 0,
[2025-12-02 00:21:49]     "pilotErrorDiag": "",
[2025-12-02 00:21:49]  *** Listing of results directory ***
[2025-12-02 00:21:49] total 1084492
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-02 00:21:49] -rwx------. 1 boincer umatlas     36292 Nov 29 19:18 runpilot2-wrapper.sh
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:23 queuedata.json
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas       100 Dec  1 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 00:21:49] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  1 00:01 run_atlas
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas       105 Dec  1 00:01 job.xml
[2025-12-02 00:21:49] -rw-r--r--. 2 boincer umatlas 375247901 Dec  1 00:01 EVNT.47528871._000063.pool.root.1
[2025-12-02 00:21:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:01 start_atlas.sh
[2025-12-02 00:21:49] drwxrwx--x. 2 boincer umatlas      4096 Dec  1 00:01 shared
[2025-12-02 00:21:49] -rw-r--r--. 2 boincer umatlas    590137 Dec  1 00:01 input.tar.gz
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas         0 Dec  1 00:01 boinc_lockfile
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas      2879 Dec  1 00:01 pandaJob.out
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas        57 Dec  1 00:01 setup.sh.local
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas    993248 Dec  1 00:02 agis_schedconf.cvmfs.json
[2025-12-02 00:21:49] drwx------. 5 boincer umatlas      4096 Dec  1 00:02 pilot3
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas       533 Dec  1 23:44 boinc_task_state.xml
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas 703254572 Dec  2 00:18 HITS.47538113._002350.pool.root.1
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas      6663 Dec  2 00:19 init_data.xml
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas      1072 Dec  2 00:19 memory_monitor_summary.json
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas   1516240 Dec  2 00:19 agis_ddmendpoints.agis.ALL.json
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas   3009154 Dec  2 00:20 log.47538113._002350.job.log.tgz.1
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas     28748 Dec  2 00:20 heartbeat.json
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas        95 Dec  2 00:21 pilot_heartbeat.json
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas       821 Dec  2 00:21 pilotlog.txt
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas  11016908 Dec  2 00:21 log.47538113._002350.job.log.1
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas       353 Dec  2 00:21 output.list
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas       620 Dec  2 00:21 runtime_log
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas  14069760 Dec  2 00:21 result.tar.gz
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas      9345 Dec  2 00:21 runtime_log.err
[2025-12-02 00:21:49] -rw-------. 1 boincer umatlas       665 Dec  2 00:21 cTdKDmXKkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuOPKDmGCvFSo.diag
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 00:21 boinc_mmap_file
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas        29 Dec  2 00:21 wrapper_checkpoint.txt
[2025-12-02 00:21:49] -rw-r--r--. 1 boincer umatlas     21856 Dec  2 00:21 stderr.txt
[2025-12-02 00:21:50] HITS file was successfully produced:
[2025-12-02 00:21:50] -rw-------. 1 boincer umatlas 703254572 Dec  2 00:18 shared/HITS.pool.root.1
[2025-12-02 00:21:50]  *** Contents of shared directory: ***
[2025-12-02 00:21:50] total 1067576
[2025-12-02 00:21:50] -rw-r--r--. 2 boincer umatlas 375247901 Dec  1 00:01 ATLAS.root_0
[2025-12-02 00:21:50] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 00:01 start_atlas.sh
[2025-12-02 00:21:50] -rw-r--r--. 2 boincer umatlas    590137 Dec  1 00:01 input.tar.gz
[2025-12-02 00:21:50] -rw-------. 1 boincer umatlas 703254572 Dec  2 00:18 HITS.pool.root.1
[2025-12-02 00:21:50] -rw-------. 1 boincer umatlas  14069760 Dec  2 00:21 result.tar.gz
00:21:51 (146232): run_atlas exited; CPU time 260633.818149
00:21:51 (146232): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN