Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:29 (19081): wrapper (7.7.26015): starting
17:39:29 (19081): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:39:29] Arguments: --nthreads 8
[2025-12-02 17:39:29] Threads: 8
[2025-12-02 17:39:29] Checking for CVMFS
[2025-12-02 17:39:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:39:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:39:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:39:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:39:32] 2.11.2.0 19872 294108 141340 153562 2 72 20142689 25165825 2504 130560 25 125024282 99.870 80739436 2530 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 17:39:32] CVMFS is ok
[2025-12-02 17:39:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:39:32] Checking for apptainer binary...
[2025-12-02 17:39:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 17:39:32] Running /usr/bin/apptainer --version
[2025-12-02 17:39:32] apptainer version 1.3.2-1.el7
[2025-12-02 17:39:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:39:47] cg-vwn350.simple-grid.lan
[2025-12-02 17:39:47] apptainer works
[2025-12-02 17:39:47] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:39:47] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:39:47] Starting ATLAS job with PandaID=6905165551
[2025-12-02 17:39:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 14:14:21]  *** The last 200 lines of the pilot log: ***
[2025-12-03 14:14:22] 2025-12-03 13:13:33,882 | INFO     | monitor loop #5043: job 0:6905165551 is in state 'finished'
[2025-12-03 14:14:22] 2025-12-03 13:13:33,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 14:14:22] 2025-12-03 13:13:35,016 | INFO     | PID=22912 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 14:14:22] 2025-12-03 13:13:35,016 | INFO     | .. there are 9 such processes running
[2025-12-03 14:14:22] 2025-12-03 13:13:36,017 | INFO     | time since job start (73797s) is within the limit (172800.0s)
[2025-12-03 14:14:22] 2025-12-03 13:13:36,390 | INFO     | monitor loop #5044: job 0:6905165551 is in state 'finished'
[2025-12-03 14:14:22] 2025-12-03 13:13:36,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 14:14:22] 2025-12-03 13:13:38,025 | INFO     | time since job start (73799s) is within the limit (172800.0s)
[2025-12-03 14:14:22] 2025-12-03 13:13:38,895 | INFO     | monitor loop #5045: job 0:6905165551 is in state 'finished'
[2025-12-03 14:14:22] 2025-12-03 13:13:38,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 14:14:22] 2025-12-03 13:13:40,031 | INFO     | time since job start (73801s) is within the limit (172800.0s)
[2025-12-03 14:14:22] 2025-12-03 13:13:41,408 | INFO     | monitor loop #5046: job 0:6905165551 is in state 'finished'
[2025-12-03 14:14:22] 2025-12-03 13:13:41,409 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 14:14:22] 2025-12-03 13:13:42,039 | INFO     | time since job start (73803s) is within the limit (172800.0s)
[2025-12-03 14:14:22] 2025-12-03 13:13:43,258 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 14:14:22] 2025-12-03 13:13:43,259 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 14:14:22] 2025-12-03 13:13:43,260 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6905165551/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 14:14:22] 2025-12-03 13:13:43,261 | INFO     | extracted standard info from prmon json
[2025-12-03 14:14:22] 2025-12-03 13:13:43,261 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 14:14:22] 2025-12-03 13:13:43,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 14:14:22] 2025-12-03 13:13:43,284 | INFO     | fitting pss+swap vs Time
[2025-12-03 14:14:22] 2025-12-03 13:13:43,286 | INFO     | sum of square deviations: 533148148634.8054
[2025-12-03 14:14:22] 2025-12-03 13:13:43,331 | INFO     | sum of deviations: 3046423041082.1265
[2025-12-03 14:14:22] 2025-12-03 13:13:43,331 | INFO     | mean x: 1764730993.5626044
[2025-12-03 14:14:22] 2025-12-03 13:13:43,332 | INFO     | mean y: 3337171.958263773
[2025-12-03 14:14:22] 2025-12-03 13:13:43,332 | INFO     | intersect: -10080383786.028955
[2025-12-03 14:14:22] 2025-12-03 13:13:43,333 | INFO     | chi2: 22.033233537542547
[2025-12-03 14:14:22] 2025-12-03 13:13:43,335 | INFO     | sum of square deviations: 526500868066.6354
[2025-12-03 14:14:22] 2025-12-03 13:13:43,376 | INFO     | sum of deviations: 3538719531099.5474
[2025-12-03 14:14:22] 2025-12-03 13:13:43,376 | INFO     | mean x: 1764730841.0670578
[2025-12-03 14:14:22] 2025-12-03 13:13:43,377 | INFO     | mean y: 3348464.9807208716
[2025-12-03 14:14:22] 2025-12-03 13:13:43,377 | INFO     | intersect: -11857766821.209764
[2025-12-03 14:14:22] 2025-12-03 13:13:43,378 | INFO     | chi2: 18.542592274639013
[2025-12-03 14:14:22] 2025-12-03 13:13:43,378 | INFO     | current chi2=18.542592274639013 (change=15.842619091545556 %)
[2025-12-03 14:14:22] 2025-12-03 13:13:43,379 | INFO     | right removable region: 1192
[2025-12-03 14:14:22] 2025-12-03 13:13:43,380 | INFO     | sum of square deviations: 526500091536.6351
[2025-12-03 14:14:22] 2025-12-03 13:13:43,430 | INFO     | sum of deviations: 2443301033592.0645
[2025-12-03 14:14:22] 2025-12-03 13:13:43,431 | INFO     | mean x: 1764731146.0670578
[2025-12-03 14:14:22] 2025-12-03 13:13:43,431 | INFO     | mean y: 3351006.999161777
[2025-12-03 14:14:22] 2025-12-03 13:13:43,431 | INFO     | intersect: -8186143168.801429
[2025-12-03 14:14:22] 2025-12-03 13:13:43,432 | INFO     | chi2: 17.034550611124104
[2025-12-03 14:14:22] 2025-12-03 13:13:43,432 | INFO     | current chi2=17.034550611124104 (change=22.687014676720782 %)
[2025-12-03 14:14:22] 2025-12-03 13:13:43,433 | INFO     | left removable region: 10
[2025-12-03 14:14:22] 2025-12-03 13:13:43,434 | INFO     | sum of square deviations: 512070293040.4868
[2025-12-03 14:14:22] 2025-12-03 13:13:43,474 | INFO     | sum of deviations: 2520517481838.6826
[2025-12-03 14:14:22] 2025-12-03 13:13:43,475 | INFO     | mean x: 1764731115.5769882
[2025-12-03 14:14:22] 2025-12-03 13:13:43,475 | INFO     | mean y: 3377449.0913705584
[2025-12-03 14:14:22] 2025-12-03 13:13:43,475 | INFO     | intersect: -8682999573.769426
[2025-12-03 14:14:22] 2025-12-03 13:13:43,476 | INFO     | chi2: 8.81070030900071
[2025-12-03 14:14:22] 2025-12-03 13:13:43,477 | INFO     | current memory leak: 4.92 B/s (using 1182 data points, chi2=8.81)
[2025-12-03 14:14:22] 2025-12-03 13:13:43,478 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-03 14:14:22] 2025-12-03 13:13:43,478 | INFO     | ..............................
[2025-12-03 14:14:22] 2025-12-03 13:13:43,478 | INFO     | . Timing measurements:
[2025-12-03 14:14:22] 2025-12-03 13:13:43,478 | INFO     | . get job = 0 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,478 | INFO     | . initial setup = 14 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,478 | INFO     | . payload setup = 304 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,478 | INFO     | . stage-in = 0 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,479 | INFO     | . payload execution = 73205 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,479 | INFO     | . stage-out = 9 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,479 | INFO     | . log creation = 1 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,479 | INFO     | ..............................
[2025-12-03 14:14:22] 2025-12-03 13:13:43,591 | INFO     | 
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | job summary report
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | --------------------------------------------------
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | PanDA job id: 6905165551
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | task id: 47538113
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | errors: (none)
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | pilot state: finished 
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | transexitcode: 0
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | exeerrorcode: 0
[2025-12-03 14:14:22] 2025-12-03 13:13:43,592 | INFO     | exeerrordiag: 
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | exitcode: 0
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | exitmsg: OK
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | cpuconsumptiontime: 272715 s
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | nevents: 1000
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | neventsw: 0
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | pid: 30154
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | pgrp: 30154
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | corecount: 8
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | event service: False
[2025-12-03 14:14:22] 2025-12-03 13:13:43,593 | INFO     | sizes: {0: 2283572, 1: 2284258, 2: 2284457, 13: 2284457, 23: 2284513, 34: 2284541, 45: 2284697, 56: 2284725, 66: 2284753, 77: 2284781, 88: 2284837, 91: 2285407, 99
[2025-12-03 14:14:22] 2025-12-03 13:13:43,594 | INFO     | --------------------------------------------------
[2025-12-03 14:14:22] 2025-12-03 13:13:43,594 | INFO     | 
[2025-12-03 14:14:22] 2025-12-03 13:13:43,594 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-12-03 14:14:22] 2025-12-03 13:13:44,047 | INFO     | time since job start (73805s) is within the limit (172800.0s)
[2025-12-03 14:14:22] 2025-12-03 13:13:44,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 14:14:22] 2025-12-03 13:13:44,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 14:14:22] 2025-12-03 13:13:44,129 | INFO     | job 6905165551 has completed (purged errors)
[2025-12-03 14:14:22] 2025-12-03 13:13:44,129 | INFO     | overall cleanup function is called
[2025-12-03 14:14:22] 2025-12-03 13:13:45,155 | INFO     | --- collectZombieJob: --- 10, [30154]
[2025-12-03 14:14:22] 2025-12-03 13:13:45,156 | INFO     | zombie collector waiting for pid 30154
[2025-12-03 14:14:22] 2025-12-03 13:13:45,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 14:14:22] 2025-12-03 13:13:45,156 | INFO     | collected zombie processes
[2025-12-03 14:14:22] 2025-12-03 13:13:45,156 | INFO     | will attempt to kill all subprocesses of pid=30154
[2025-12-03 14:14:22] 2025-12-03 13:13:45,296 | INFO     | process IDs to be killed: [30154] (in reverse order)
[2025-12-03 14:14:22] 2025-12-03 13:13:46,236 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 14:14:22] 2025-12-03 13:13:46,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 14:14:22] 2025-12-03 13:13:46,239 | INFO     | did not find any defunct processes belonging to 30154
[2025-12-03 14:14:22] 2025-12-03 13:13:46,242 | INFO     | did not find any defunct processes belonging to 30154
[2025-12-03 14:14:22] 2025-12-03 13:13:46,311 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 14:14:22] 2025-12-03 13:13:46,311 | INFO     | ready for new job
[2025-12-03 14:14:22] 2025-12-03 13:13:46,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 14:14:22] 2025-12-03 13:13:46,316 | INFO     | ***************************************
[2025-12-03 14:14:22] 2025-12-03 13:13:46,316 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 14:14:22] 2025-12-03 13:13:46,316 | INFO     | ***************************************
[2025-12-03 14:14:22] 2025-12-03 13:13:46,316 | INFO     | 
[2025-12-03 14:14:22] 2025-12-03 13:13:46,317 | INFO     | pilot is running in a VM
[2025-12-03 14:14:22] 2025-12-03 13:13:46,317 | INFO     | architecture information:
[2025-12-03 14:14:22] 2025-12-03 13:13:46,336 | INFO     | executing command: cat /etc/os-release
[2025-12-03 14:14:22] 2025-12-03 13:13:46,682 | INFO     | cat /etc/os-release:
[2025-12-03 14:14:22] NAME="CentOS Linux"
[2025-12-03 14:14:22] VERSION="7 (Core)"
[2025-12-03 14:14:22] ID="centos"
[2025-12-03 14:14:22] ID_LIKE="rhel fedora"
[2025-12-03 14:14:22] VERSION_ID="7"
[2025-12-03 14:14:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 14:14:22] ANSI_COLOR="0;31"
[2025-12-03 14:14:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 14:14:22] HOME_URL="https://www.centos.org/"
[2025-12-03 14:14:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 14:14:22] 
[2025-12-03 14:14:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 14:14:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 14:14:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 14:14:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 14:14:22] 
[2025-12-03 14:14:22] 2025-12-03 13:13:46,682 | INFO     | ***************************************
[2025-12-03 14:14:22] 2025-12-03 13:13:47,186 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-12-03 14:14:22] 2025-12-03 13:13:47,395 | INFO     | sufficient remaining disk space (495132344320 B)
[2025-12-03 14:14:22] 2025-12-03 13:13:47,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 14:14:22] 2025-12-03 13:13:47,396 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 14:14:22] 2025-12-03 13:13:47,396 | INFO     | update_server=False
[2025-12-03 14:14:22] 2025-12-03 13:13:47,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 14:14:22] 2025-12-03 13:13:47,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 14:14:22] 2025-12-03 13:13:47,425 | INFO     | aborting loop
[2025-12-03 14:14:22] 2025-12-03 13:13:47,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 14:14:22] 2025-12-03 13:13:47,573 | INFO     | [monitor] cgroup control has ended
[2025-12-03 14:14:22] 2025-12-03 13:13:47,837 | INFO     | all data control threads have been joined
[2025-12-03 14:14:22] 2025-12-03 13:13:48,402 | INFO     | [job] retrieve thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,431 | INFO     | [job] job monitor thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,492 | INFO     | all job control threads have been joined
[2025-12-03 14:14:22] 2025-12-03 13:13:48,578 | INFO     | [job] validate thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 14:14:22] 2025-12-03 13:13:48,639 | INFO     | [payload] failed_post thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,661 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,765 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,842 | INFO     | all payload control threads have been joined
[2025-12-03 14:14:22] 2025-12-03 13:13:48,843 | INFO     | [data] control thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,859 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:48,977 | INFO     | [data] copytool_in thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:49,297 | INFO     | [payload] validate_post thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:49,439 | INFO     | [data] copytool_out thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:49,498 | INFO     | [job] control thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:49,611 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:49,619 | INFO     | [job] queue monitor thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:49,848 | INFO     | [payload] control thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:50,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 14:14:22] 2025-12-03 13:13:54,080 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 14:14:22] 2025-12-03 13:13:55,480 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885686658880)>', '<ExcThread(monitor, started 139884727625472)>']
[2025-12-03 14:14:22] 2025-12-03 13:14:00,506 | INFO     | all workflow threads have been joined
[2025-12-03 14:14:22] 2025-12-03 13:14:00,507 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 14:14:22] 2025-12-03 13:14:00,507 | INFO     | traces error code: 0
[2025-12-03 14:14:22] 2025-12-03 13:14:00,507 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 14:14:22] 2025-12-03 13:14:15,794 [wrapper] supervise_pilot (15 min periods counter: 83)
[2025-12-03 14:14:22] 2025-12-03 13:14:17,204 | INFO     | PID=22912 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 14:14:22] 2025-12-03 13:14:17,204 | INFO     | .. there are 9 such processes running
[2025-12-03 14:14:22] 2025-12-03 13:14:17,205 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 14:14:22] 2025-12-03 13:14:17,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 14:14:22] 2025-12-03 13:14:17,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 14:14:22] 2025-12-03 13:14:17,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 14:14:22] 2025-12-03 13:14:17,205 | INFO     | [monitor] control thread has ended
[2025-12-03 14:14:22] 2025-12-03 13:14:17,466 [wrapper] ==== pilot stdout END ====
[2025-12-03 14:14:22] 2025-12-03 13:14:17,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 14:14:22] 2025-12-03 13:14:17,558 [wrapper] pilotpid: 22912
[2025-12-03 14:14:22] 2025-12-03 13:14:17,662 [wrapper] Pilot exit status: 0
[2025-12-03 14:14:22] 2025-12-03 13:14:18,063 [wrapper] pandaids: 6905165551
[2025-12-03 14:14:22] 2025-12-03 13:14:18,839 [wrapper] cleanup supervisor_pilot 31511 22913
[2025-12-03 14:14:22] 2025-12-03 13:14:18,879 [wrapper] Test setup, not cleaning
[2025-12-03 14:14:22] 2025-12-03 13:14:18,994 [wrapper] apfmon messages muted
[2025-12-03 14:14:22] 2025-12-03 13:14:19,046 [wrapper] ==== wrapper stdout END ====
[2025-12-03 14:14:22] 2025-12-03 13:14:19,152 [wrapper] ==== wrapper stderr END ====
[2025-12-03 14:14:22]  *** Error codes and diagnostics ***
[2025-12-03 14:14:22]     "exeErrorCode": 0,
[2025-12-03 14:14:22]     "exeErrorDiag": "",
[2025-12-03 14:14:22]     "pilotErrorCode": 0,
[2025-12-03 14:14:22]     "pilotErrorDiag": "",
[2025-12-03 14:14:22]  *** Listing of results directory ***
[2025-12-03 14:14:22] total 1091768
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 14:14:22] -rwx------. 1 boinc boinc     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:23 queuedata.json
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc       100 Dec  2 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 14:14:22] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 17:39 run_atlas
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc       105 Dec  2 17:39 job.xml
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc      6393 Dec  2 17:39 init_data.xml
[2025-12-03 14:14:22] -rw-r--r--. 2 boinc boinc 376909102 Dec  2 17:39 EVNT.47528871._000051.pool.root.1
[2025-12-03 14:14:22] -rw-r--r--. 2 boinc boinc     15847 Dec  2 17:39 start_atlas.sh
[2025-12-03 14:14:22] drwxrwx--x. 2 boinc boinc        68 Dec  2 17:39 shared
[2025-12-03 14:14:22] -rw-r--r--. 2 boinc boinc    590138 Dec  2 17:39 input.tar.gz
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc         0 Dec  2 17:39 boinc_lockfile
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc      2879 Dec  2 17:39 pandaJob.out
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc    988852 Dec  2 17:43 agis_schedconf.cvmfs.json
[2025-12-03 14:14:22] drwx------. 5 boinc boinc      4096 Dec  2 17:43 pilot3
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc       533 Dec  3 13:51 boinc_task_state.xml
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc 712486778 Dec  3 14:10 HITS.47538113._002256.pool.root.1
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc      1033 Dec  3 14:11 memory_monitor_summary.json
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc   1516240 Dec  3 14:12 agis_ddmendpoints.agis.ALL.json
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc   2430078 Dec  3 14:12 log.47538113._002256.job.log.tgz.1
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc     28042 Dec  3 14:13 heartbeat.json
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc      8192 Dec  3 14:13 boinc_mmap_file
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc        29 Dec  3 14:13 wrapper_checkpoint.txt
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc       820 Dec  3 14:14 pilotlog.txt
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc        95 Dec  3 14:14 pilot_heartbeat.json
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc   9890145 Dec  3 14:14 log.47538113._002256.job.log.1
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc       353 Dec  3 14:14 output.list
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc       620 Dec  3 14:14 runtime_log
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc  12359680 Dec  3 14:14 result.tar.gz
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc      8833 Dec  3 14:14 runtime_log.err
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc       661 Dec  3 14:14 edHNDmWKkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmNPKDmIaLuMo.diag
[2025-12-03 14:14:22] -rw-r--r--. 1 boinc boinc     21494 Dec  3 14:14 stderr.txt
[2025-12-03 14:14:22] HITS file was successfully produced:
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc 712486778 Dec  3 14:10 shared/HITS.pool.root.1
[2025-12-03 14:14:22]  *** Contents of shared directory: ***
[2025-12-03 14:14:22] total 1076532
[2025-12-03 14:14:22] -rw-r--r--. 2 boinc boinc 376909102 Dec  2 17:39 ATLAS.root_0
[2025-12-03 14:14:22] -rw-r--r--. 2 boinc boinc     15847 Dec  2 17:39 start_atlas.sh
[2025-12-03 14:14:22] -rw-r--r--. 2 boinc boinc    590138 Dec  2 17:39 input.tar.gz
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc 712486778 Dec  3 14:10 HITS.pool.root.1
[2025-12-03 14:14:22] -rw-------. 1 boinc boinc  12359680 Dec  3 14:14 result.tar.gz
14:14:23 (19081): run_atlas exited; CPU time 273103.307474
14:14:23 (19081): called boinc_finish(0)

</stderr_txt>
]]>

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