Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:12:17 (3259855): wrapper (7.7.26015): starting
16:12:17 (3259855): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 16:12:17] Arguments: --nthreads 12
[2025-11-30 16:12:17] Threads: 12
[2025-11-30 16:12:17] Checking for CVMFS
[2025-11-30 16:12:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 16:12:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 16:12:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 16:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 16:12:18] 2.11.5.0 3097079 34 58712 153498 1 237 25268043 45568000 0 130560 0 516368 99.997 1528 46303 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-30 16:12:18] CVMFS is ok
[2025-11-30 16:12:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 16:12:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 16:12:18] Further information can be found at the LHC@home message board.
[2025-11-30 16:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 16:12:18] Checking for apptainer binary...
[2025-11-30 16:12:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 16:12:18] Running /usr/bin/apptainer --version
[2025-11-30 16:12:18] apptainer version 1.4.1-1.el9
[2025-11-30 16:12:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 16:12:18] wns0085.triumf.lcg
[2025-11-30 16:12:18] apptainer works
[2025-11-30 16:12:18] Set ATHENA_PROC_NUMBER=12
[2025-11-30 16:12:18] Set ATHENA_CORE_NUMBER=12
[2025-11-30 16:12:18] Starting ATLAS job with PandaID=6905025584
[2025-11-30 16:12:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 16:16:32]  *** The last 200 lines of the pilot log: ***
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | wrong length of table data, x=[1764547969.0], y=[2727.0] (must be same and length>=4)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | could have reported an average CPU frequency of 3140 MHz (4 samples)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | ..............................
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . Timing measurements:
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . get job = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . initial setup = 2 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . payload setup = 6 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . stage-in = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . payload execution = 57 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . stage-out = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . log creation = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | ..............................
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905025584/pilotlog.txt
[2025-11-30 16:16:32] 2025-12-01 00:15:46,921 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-30 16:16:32] - Log from pilotlog.txt -
[2025-11-30 16:16:32] 2025-12-01 00:15:46,909 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905025584/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,910 | INFO     | extracted standard info from prmon json
[2025-11-30 16:16:32] 2025-12-01 00:15:46,910 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 16:16:32] 2025-12-01 00:15:46,910 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | wrong length of table data, x=[1764547969.0], y=[2727.0] (must be same and length>=4)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | could have reported an average CPU frequency of 3140 MHz (4 samples)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | ..............................
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . Timing measurements:
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . get job = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . initial setup = 2 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . payload setup = 6 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . stage-in = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . payload execution = 57 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . stage-out = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . log creation = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | ..............................
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905025584/pilotlog.txt
[2025-11-30 16:16:32] 2025-12-01 00:15:46,922 | WARNING  | 
[2025-11-30 16:16:32] [begin log extracts]
[2025-11-30 16:16:32] - Log from pilotlog.txt -
[2025-11-30 16:16:32] 2025-12-01 00:15:46,909 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905025584/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,910 | INFO     | extracted standard info from prmon json
[2025-11-30 16:16:32] 2025-12-01 00:15:46,910 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 16:16:32] 2025-12-01 00:15:46,910 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 16:16:32] 2025-12-01 00:15:46,911 | WARNING  | wrong length of table data, x=[1764547969.0], y=[2727.0] (must be same and length>=4)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | could have reported an average CPU frequency of 3140 MHz (4 samples)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | ..............................
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . Timing measurements:
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . get job = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . initial setup = 2 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,912 | INFO     | . payload setup = 6 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . stage-in = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . payload execution = 57 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . stage-out = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | . log creation = 0 s
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | ..............................
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-30 16:16:32] 2025-12-01 00:15:46,913 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905025584/pilotlog.txt
[2025-11-30 16:16:32] [end log extracts]
[2025-11-30 16:16:32] 2025-12-01 00:15:46,922 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-30 16:16:32] 2025-12-01 00:15:46,922 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | 
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | job summary report
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | --------------------------------------------------
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | PanDA job id: 6905025584
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | task id: 47538113
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-30 16:13:39,120 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | pilot state: failed 
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | transexitcode: 65
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | exeerrorcode: 65
[2025-11-30 16:16:32] 2025-12-01 00:15:46,999 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | exitcode: 65
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | cpuconsumptiontime: 52 s
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | nevents: 0
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | neventsw: 0
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | pid: 3270741
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | pgrp: 3270741
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | corecount: 12
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | event service: False
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | sizes: {0: 2284397, 3: 2284659, 10: 2284687, 67: 2308123, 68: 2312413, 70: 2312501, 188: 2312795}
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | --------------------------------------------------
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | 
[2025-11-30 16:16:32] 2025-12-01 00:15:47,000 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-30 16:16:32] 2025-12-01 00:15:47,011 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,012 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 16:16:32] 2025-12-01 00:15:47,013 | INFO     | job 6905025584 has completed (purged errors)
[2025-11-30 16:16:32] 2025-12-01 00:15:47,013 | INFO     | overall cleanup function is called
[2025-11-30 16:16:32] 2025-12-01 00:15:48,020 | INFO     | --- collectZombieJob: --- 10, [3270741]
[2025-11-30 16:16:32] 2025-12-01 00:15:48,020 | INFO     | zombie collector waiting for pid 3270741
[2025-11-30 16:16:32] 2025-12-01 00:15:48,020 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 16:16:32] 2025-12-01 00:15:48,020 | INFO     | collected zombie processes
[2025-11-30 16:16:32] 2025-12-01 00:15:48,020 | INFO     | will attempt to kill all subprocesses of pid=3270741
[2025-11-30 16:16:32] 2025-12-01 00:15:48,106 | INFO     | process IDs to be killed: [3270741] (in reverse order)
[2025-11-30 16:16:32] 2025-12-01 00:15:48,137 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 16:16:32] 2025-12-01 00:15:48,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 16:16:32] 2025-12-01 00:15:48,140 | INFO     | did not find any defunct processes belonging to 3270741
[2025-11-30 16:16:32] 2025-12-01 00:15:48,143 | INFO     | did not find any defunct processes belonging to 3270741
[2025-11-30 16:16:32] 2025-12-01 00:15:48,144 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 16:16:32] 2025-12-01 00:15:48,144 | INFO     | ready for new job
[2025-11-30 16:16:32] 2025-12-01 00:15:48,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 16:16:32] 2025-12-01 00:15:48,145 | INFO     | ***************************************
[2025-11-30 16:16:32] 2025-12-01 00:15:48,145 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 16:16:32] 2025-12-01 00:15:48,145 | INFO     | ***************************************
[2025-11-30 16:16:32] 2025-12-01 00:15:48,145 | INFO     | 
[2025-11-30 16:16:32] 2025-12-01 00:15:48,147 | INFO     | architecture information:
[2025-11-30 16:16:32] 2025-12-01 00:15:48,147 | INFO     | executing command: cat /etc/os-release
[2025-11-30 16:16:32] 2025-12-01 00:15:48,154 | INFO     | cat /etc/os-release:
[2025-11-30 16:16:32] NAME="CentOS Linux"
[2025-11-30 16:16:32] VERSION="7 (Core)"
[2025-11-30 16:16:32] ID="centos"
[2025-11-30 16:16:32] ID_LIKE="rhel fedora"
[2025-11-30 16:16:32] VERSION_ID="7"
[2025-11-30 16:16:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 16:16:32] ANSI_COLOR="0;31"
[2025-11-30 16:16:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 16:16:32] HOME_URL="https://www.centos.org/"
[2025-11-30 16:16:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 16:16:32] 
[2025-11-30 16:16:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 16:16:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 16:16:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 16:16:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 16:16:32] 
[2025-11-30 16:16:32] 2025-12-01 00:15:48,154 | INFO     | ***************************************
[2025-11-30 16:16:32] 2025-12-01 00:15:48,657 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-30 16:16:32] 2025-12-01 00:15:48,666 | INFO     | sufficient remaining disk space (2242128117760 B)
[2025-11-30 16:16:32] 2025-12-01 00:15:48,666 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 16:16:32] 2025-12-01 00:15:48,667 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 16:16:32] 2025-12-01 00:15:48,667 | INFO     | update_server=False
[2025-11-30 16:16:32] 2025-12-01 00:15:48,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 16:16:32] 2025-12-01 00:15:48,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 16:16:32] 2025-12-01 00:15:49,338 | INFO     | all data control threads have been joined
[2025-11-30 16:16:32] 2025-12-01 00:15:49,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 16:16:32] 2025-12-01 00:15:49,670 | INFO     | aborting loop
[2025-11-30 16:16:32] 2025-12-01 00:15:49,672 | INFO     | [job] retrieve thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:49,672 | INFO     | [job] queue monitor thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:49,677 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:49,757 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:49,788 | INFO     | all payload control threads have been joined
[2025-11-30 16:16:32] 2025-12-01 00:15:49,829 | INFO     | all job control threads have been joined
[2025-11-30 16:16:32] 2025-12-01 00:15:49,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 16:16:32] 2025-12-01 00:15:50,183 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:50,343 | INFO     | [data] control thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:50,454 | INFO     | [payload] failed_post thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:50,489 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:50,675 | INFO     | [job] job monitor thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:50,794 | INFO     | [payload] control thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:50,834 | INFO     | [job] control thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:51,049 | INFO     | [job] validate thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:51,080 | INFO     | [data] copytool_in thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:51,241 | INFO     | [payload] validate_post thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:51,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 16:16:32] 2025-12-01 00:15:51,940 | INFO     | [data] copytool_out thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:15:55,715 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 16:16:32] 2025-12-01 00:16:18,759 | INFO     | PID=3263533 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 16:16:32] 2025-12-01 00:16:18,759 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 16:16:32] 2025-12-01 00:16:18,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 16:16:32] 2025-12-01 00:16:18,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 16:16:32] 2025-12-01 00:16:25,421 | INFO     | [monitor] cgroup control has ended
[2025-11-30 16:16:32] 2025-12-01 00:16:27,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139959788431168)>', '<ExcThread(monitor, started 139959386220288)>']
[2025-11-30 16:16:32] 2025-12-01 00:16:27,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 16:16:32] 2025-12-01 00:16:27,805 | INFO     | [monitor] control thread has ended
[2025-11-30 16:16:32] 2025-12-01 00:16:32,378 | INFO     | all workflow threads have been joined
[2025-11-30 16:16:32] 2025-12-01 00:16:32,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 16:16:32] 2025-12-01 00:16:32,379 | INFO     | traces error code: 0
[2025-11-30 16:16:32] 2025-12-01 00:16:32,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 16:16:32] 2025-12-01 00:16:32,452 [wrapper] ==== pilot stdout END ====
[2025-11-30 16:16:32] 2025-12-01 00:16:32,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 16:16:32] 2025-12-01 00:16:32,455 [wrapper] pilotpid: 3263533
[2025-11-30 16:16:32] 2025-12-01 00:16:32,457 [wrapper] Pilot exit status: 0
[2025-11-30 16:16:32] 2025-12-01 00:16:32,463 [wrapper] pandaids: 6905025584
[2025-11-30 16:16:32] 2025-12-01 00:16:32,485 [wrapper] cleanup supervisor_pilot 3263539 3263534
[2025-11-30 16:16:32] 2025-12-01 00:16:32,487 [wrapper] Test setup, not cleaning
[2025-11-30 16:16:32] 2025-12-01 00:16:32,488 [wrapper] apfmon messages muted
[2025-11-30 16:16:32] 2025-12-01 00:16:32,490 [wrapper] ==== wrapper stdout END ====
[2025-11-30 16:16:32] 2025-12-01 00:16:32,492 [wrapper] ==== wrapper stderr END ====
[2025-11-30 16:16:32]  *** Error codes and diagnostics ***
[2025-11-30 16:16:32]     "exeErrorCode": 65,
[2025-11-30 16:16:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-30 16:16:32]     "pilotErrorCode": 1305,
[2025-11-30 16:16:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-30 16:16:32]  *** Listing of results directory ***
[2025-11-30 16:16:32] total 373612
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc    576529 Nov 29 16:16 pilot3.tar.gz
[2025-11-30 16:16:32] -rwx------. 1 boinc boinc     36292 Nov 29 16:18 runpilot2-wrapper.sh
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc      5112 Nov 29 16:23 queuedata.json
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc       100 Nov 30 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 16:16:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 16:12 run_atlas
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc       105 Nov 30 16:12 job.xml
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc      6597 Nov 30 16:12 init_data.xml
[2025-11-30 16:16:32] -rw-r--r--. 2 boinc boinc 378378613 Nov 30 16:12 EVNT.47528871._000042.pool.root.1
[2025-11-30 16:16:32] -rw-r--r--. 2 boinc boinc     15847 Nov 30 16:12 start_atlas.sh
[2025-11-30 16:16:32] drwxrwx--x. 2 boinc boinc      4096 Nov 30 16:12 shared
[2025-11-30 16:16:32] -rw-r--r--. 2 boinc boinc    590139 Nov 30 16:12 input.tar.gz
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc         0 Nov 30 16:12 boinc_lockfile
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc      2879 Nov 30 16:12 pandaJob.out
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc    993245 Nov 30 16:12 agis_schedconf.cvmfs.json
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc   1516240 Nov 30 16:12 agis_ddmendpoints.agis.ALL.json
[2025-11-30 16:16:32] drwx------. 5 boinc boinc      4096 Nov 30 16:12 pilot3
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc       523 Nov 30 16:13 boinc_task_state.xml
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc       991 Nov 30 16:13 memory_monitor_summary.json
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc     49731 Nov 30 16:13 log.47538113._002014.job.log.tgz.1
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc        95 Nov 30 16:15 pilot_heartbeat.json
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc      9883 Nov 30 16:15 heartbeat.json
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc        23 Nov 30 16:16 wrapper_checkpoint.txt
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc      8192 Nov 30 16:16 boinc_mmap_file
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc      4747 Nov 30 16:16 pilotlog.txt
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc     92895 Nov 30 16:16 log.47538113._002014.job.log.1
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc       186 Nov 30 16:16 output.list
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc       620 Nov 30 16:16 runtime_log
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc    163840 Nov 30 16:16 result.tar.gz
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc      8636 Nov 30 16:16 runtime_log.err
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc       643 Nov 30 16:16 9tHMDmLKkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQMPKDmlkbc5n.diag
[2025-11-30 16:16:32] -rw-r--r--. 1 boinc boinc     22382 Nov 30 16:16 stderr.txt
[2025-11-30 16:16:32] No HITS result produced
[2025-11-30 16:16:32]  *** Contents of shared directory: ***
[2025-11-30 16:16:32] total 370272
[2025-11-30 16:16:32] -rw-r--r--. 2 boinc boinc 378378613 Nov 30 16:12 ATLAS.root_0
[2025-11-30 16:16:32] -rw-r--r--. 2 boinc boinc     15847 Nov 30 16:12 start_atlas.sh
[2025-11-30 16:16:32] -rw-r--r--. 2 boinc boinc    590139 Nov 30 16:12 input.tar.gz
[2025-11-30 16:16:32] -rw-------. 1 boinc boinc    163840 Nov 30 16:16 result.tar.gz
16:16:34 (3259855): run_atlas exited; CPU time 49.211622
16:16:34 (3259855): called boinc_finish(0)

</stderr_txt>
]]>

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