Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:02:41 (5893): wrapper (7.7.26015): starting
16:02:41 (5893): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 16:02:41] Arguments: --nthreads 8
[2025-12-02 16:02:41] Threads: 8
[2025-12-02 16:02:41] Checking for CVMFS
[2025-12-02 16:02:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 16:02:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 16:02:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 16:02:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 16:02:46] 2.11.2.0 27863 294184 140800 153550 0 283 13854775 25165824 2358 130560 9 149175704 99.878 84693266 3599 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 16:02:46] CVMFS is ok
[2025-12-02 16:02:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 16:02:46] Checking for apptainer binary...
[2025-12-02 16:02:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 16:02:46] Running /usr/bin/apptainer --version
[2025-12-02 16:02:46] apptainer version 1.3.2-1.el7
[2025-12-02 16:02:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 16:02:51] cg-vwn495.simple-grid.lan
[2025-12-02 16:02:51] apptainer works
[2025-12-02 16:02:51] Set ATHENA_PROC_NUMBER=8
[2025-12-02 16:02:51] Set ATHENA_CORE_NUMBER=8
[2025-12-02 16:02:51] Starting ATLAS job with PandaID=6905330623
[2025-12-02 16:02:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 10:32:49]  *** The last 200 lines of the pilot log: ***
[2025-12-03 10:32:49] 2025-12-03 09:31:39,197 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6905330623/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,198 | INFO     | extracted standard info from prmon json
[2025-12-03 10:32:49] 2025-12-03 09:31:39,198 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 10:32:49] 2025-12-03 09:31:39,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 10:32:49] 2025-12-03 09:31:39,217 | INFO     | fitting pss+swap vs Time
[2025-12-03 10:32:49] 2025-12-03 09:31:39,219 | INFO     | sum of square deviations: 387368342994.32336
[2025-12-03 10:32:49] 2025-12-03 09:31:39,252 | INFO     | sum of deviations: 2707571443491.163
[2025-12-03 10:32:49] 2025-12-03 09:31:39,252 | INFO     | mean x: 1764721446.0250697
[2025-12-03 10:32:49] 2025-12-03 09:31:39,252 | INFO     | mean y: 3362317.1792014856
[2025-12-03 10:32:49] 2025-12-03 09:31:39,252 | INFO     | intersect: -12331433438.301342
[2025-12-03 10:32:49] 2025-12-03 09:31:39,253 | INFO     | chi2: 12.06267359370585
[2025-12-03 10:32:49] 2025-12-03 09:31:39,255 | INFO     | sum of square deviations: 381998569719.0449
[2025-12-03 10:32:49] 2025-12-03 09:31:39,266 | INFO     | monitor loop #4533: job 0:6905330623 is in state 'finished'
[2025-12-03 10:32:49] 2025-12-03 09:31:39,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,285 | INFO     | sum of deviations: 3109472682014.021
[2025-12-03 10:32:49] 2025-12-03 09:31:39,285 | INFO     | mean x: 1764721293.5298507
[2025-12-03 10:32:49] 2025-12-03 09:31:39,286 | INFO     | mean y: 3373724.3274253733
[2025-12-03 10:32:49] 2025-12-03 09:31:39,286 | INFO     | intersect: -14361477582.931122
[2025-12-03 10:32:49] 2025-12-03 09:31:39,287 | INFO     | chi2: 9.164249616092748
[2025-12-03 10:32:49] 2025-12-03 09:31:39,287 | INFO     | current chi2=9.164249616092748 (change=24.028039514601986 %)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,287 | INFO     | right removable region: 1071
[2025-12-03 10:32:49] 2025-12-03 09:31:39,288 | INFO     | sum of square deviations: 381997896279.0449
[2025-12-03 10:32:49] 2025-12-03 09:31:39,318 | INFO     | sum of deviations: 2168030521180.011
[2025-12-03 10:32:49] 2025-12-03 09:31:39,318 | INFO     | mean x: 1764721598.5298507
[2025-12-03 10:32:49] 2025-12-03 09:31:39,318 | INFO     | mean y: 3377637.3591417912
[2025-12-03 10:32:49] 2025-12-03 09:31:39,318 | INFO     | intersect: -10012306543.800507
[2025-12-03 10:32:49] 2025-12-03 09:31:39,319 | INFO     | chi2: 7.166601826062891
[2025-12-03 10:32:49] 2025-12-03 09:31:39,320 | INFO     | current chi2=7.166601826062891 (change=40.58861188283886 %)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,321 | INFO     | sum of square deviations: 376677310963.71704
[2025-12-03 10:32:49] 2025-12-03 09:31:39,350 | INFO     | sum of deviations: 1726668653878.1023
[2025-12-03 10:32:49] 2025-12-03 09:31:39,350 | INFO     | mean x: 1764721751.0346766
[2025-12-03 10:32:49] 2025-12-03 09:31:39,350 | INFO     | mean y: 3390287.3486410496
[2025-12-03 10:32:49] 2025-12-03 09:31:39,351 | INFO     | intersect: -8085999866.076235
[2025-12-03 10:32:49] 2025-12-03 09:31:39,352 | INFO     | chi2: 4.0408488663345805
[2025-12-03 10:32:49] 2025-12-03 09:31:39,352 | INFO     | current chi2=4.0408488663345805 (change=43.6155521904515 %)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,353 | INFO     | sum of square deviations: 371406484539.99365
[2025-12-03 10:32:49] 2025-12-03 09:31:39,383 | INFO     | sum of deviations: 1566481714658.6152
[2025-12-03 10:32:49] 2025-12-03 09:31:39,383 | INFO     | mean x: 1764721903.537665
[2025-12-03 10:32:49] 2025-12-03 09:31:39,383 | INFO     | mean y: 3394915.547080979
[2025-12-03 10:32:49] 2025-12-03 09:31:39,383 | INFO     | intersect: -7439675435.723592
[2025-12-03 10:32:49] 2025-12-03 09:31:39,384 | INFO     | chi2: 3.558500108597505
[2025-12-03 10:32:49] 2025-12-03 09:31:39,385 | INFO     | current chi2=3.558500108597505 (change=11.936817577010984 %)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,385 | INFO     | left removable region: 30
[2025-12-03 10:32:49] 2025-12-03 09:31:39,386 | INFO     | sum of square deviations: 349806940881.96735
[2025-12-03 10:32:49] 2025-12-03 09:31:39,423 | INFO     | sum of deviations: 1858009222116.5945
[2025-12-03 10:32:49] 2025-12-03 09:31:39,423 | INFO     | mean x: 1764722178.0441883
[2025-12-03 10:32:49] 2025-12-03 09:31:39,423 | INFO     | mean y: 3412020.073967339
[2025-12-03 10:32:49] 2025-12-03 09:31:39,423 | INFO     | intersect: -9369958539.73476
[2025-12-03 10:32:49] 2025-12-03 09:31:39,425 | INFO     | chi2: 0.42513157842697014
[2025-12-03 10:32:49] 2025-12-03 09:31:39,425 | INFO     | current memory leak: 5.31 B/s (using 1041 data points, chi2=0.43)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | could have reported an average CPU frequency of 2249 MHz (37 samples)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | ..............................
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | . Timing measurements:
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | . get job = 0 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | . initial setup = 9 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | . payload setup = 283 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | . stage-in = 0 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | . payload execution = 65806 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,426 | INFO     | . stage-out = 3 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,427 | INFO     | . log creation = 0 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,427 | INFO     | ..............................
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | 
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | job summary report
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | --------------------------------------------------
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | PanDA job id: 6905330623
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | task id: 47530725
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | errors: (none)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 10:32:49] 2025-12-03 09:31:39,526 | INFO     | pilot state: finished 
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | transexitcode: 0
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | exeerrorcode: 0
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | exeerrordiag: 
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | exitcode: 0
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | exitmsg: OK
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | cpuconsumptiontime: 249016 s
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | nevents: 1000
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | neventsw: 0
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | pid: 16919
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | pgrp: 16919
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | corecount: 8
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | event service: False
[2025-12-03 10:32:49] 2025-12-03 09:31:39,527 | INFO     | sizes: {0: 2284173, 1: 2284428, 2: 2284428, 12: 2284456, 23: 2284484, 34: 2284512, 44: 2284668, 55: 2284696, 66: 2284724, 77: 2284752, 87: 2284808, 90: 2285378, 98
[2025-12-03 10:32:49] 2025-12-03 09:31:39,528 | INFO     | --------------------------------------------------
[2025-12-03 10:32:49] 2025-12-03 09:31:39,528 | INFO     | 
[2025-12-03 10:32:49] 2025-12-03 09:31:39,528 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,559 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,560 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,561 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 10:32:49] 2025-12-03 09:31:39,561 | INFO     | job 6905330623 has completed (purged errors)
[2025-12-03 10:32:49] 2025-12-03 09:31:39,561 | INFO     | overall cleanup function is called
[2025-12-03 10:32:49] 2025-12-03 09:31:40,577 | INFO     | --- collectZombieJob: --- 10, [16919]
[2025-12-03 10:32:49] 2025-12-03 09:31:40,578 | INFO     | zombie collector waiting for pid 16919
[2025-12-03 10:32:49] 2025-12-03 09:31:40,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 10:32:49] 2025-12-03 09:31:40,578 | INFO     | collected zombie processes
[2025-12-03 10:32:49] 2025-12-03 09:31:40,578 | INFO     | will attempt to kill all subprocesses of pid=16919
[2025-12-03 10:32:49] 2025-12-03 09:31:40,681 | INFO     | process IDs to be killed: [16919] (in reverse order)
[2025-12-03 10:32:49] 2025-12-03 09:31:40,786 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 10:32:49] 2025-12-03 09:31:40,786 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 10:32:49] 2025-12-03 09:31:40,791 | INFO     | did not find any defunct processes belonging to 16919
[2025-12-03 10:32:49] 2025-12-03 09:31:40,797 | INFO     | did not find any defunct processes belonging to 16919
[2025-12-03 10:32:49] 2025-12-03 09:31:40,798 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 10:32:49] 2025-12-03 09:31:40,798 | INFO     | ready for new job
[2025-12-03 10:32:49] 2025-12-03 09:31:40,799 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 10:32:49] 2025-12-03 09:31:40,803 | INFO     | ***************************************
[2025-12-03 10:32:49] 2025-12-03 09:31:40,803 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 10:32:49] 2025-12-03 09:31:40,803 | INFO     | ***************************************
[2025-12-03 10:32:49] 2025-12-03 09:31:40,803 | INFO     | 
[2025-12-03 10:32:49] 2025-12-03 09:31:40,804 | INFO     | pilot is running in a VM
[2025-12-03 10:32:49] 2025-12-03 09:31:40,804 | INFO     | architecture information:
[2025-12-03 10:32:49] 2025-12-03 09:31:40,804 | INFO     | executing command: cat /etc/os-release
[2025-12-03 10:32:49] 2025-12-03 09:31:40,823 | INFO     | cat /etc/os-release:
[2025-12-03 10:32:49] NAME="CentOS Linux"
[2025-12-03 10:32:49] VERSION="7 (Core)"
[2025-12-03 10:32:49] ID="centos"
[2025-12-03 10:32:49] ID_LIKE="rhel fedora"
[2025-12-03 10:32:49] VERSION_ID="7"
[2025-12-03 10:32:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 10:32:49] ANSI_COLOR="0;31"
[2025-12-03 10:32:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 10:32:49] HOME_URL="https://www.centos.org/"
[2025-12-03 10:32:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 10:32:49] 
[2025-12-03 10:32:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 10:32:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 10:32:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 10:32:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 10:32:49] 
[2025-12-03 10:32:49] 2025-12-03 09:31:40,823 | INFO     | ***************************************
[2025-12-03 10:32:49] 2025-12-03 09:31:41,327 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-03 10:32:49] 2025-12-03 09:31:41,460 | INFO     | sufficient remaining disk space (491195990016 B)
[2025-12-03 10:32:49] 2025-12-03 09:31:41,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 10:32:49] 2025-12-03 09:31:41,461 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 10:32:49] 2025-12-03 09:31:41,461 | INFO     | update_server=False
[2025-12-03 10:32:49] 2025-12-03 09:31:41,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 10:32:49] 2025-12-03 09:31:41,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:32:49] 2025-12-03 09:31:41,731 | INFO     | all payload control threads have been joined
[2025-12-03 10:32:49] 2025-12-03 09:31:41,771 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 10:32:49] 2025-12-03 09:31:41,775 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 10:32:49] 2025-12-03 09:31:41,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:32:49] 2025-12-03 09:31:41,775 | INFO     | will abort loop
[2025-12-03 10:32:49] 2025-12-03 09:31:41,861 | INFO     | all data control threads have been joined
[2025-12-03 10:32:49] 2025-12-03 09:31:41,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 10:32:49] 2025-12-03 09:31:42,467 | INFO     | [job] retrieve thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,467 | INFO     | [job] queue monitor thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,738 | INFO     | [payload] control thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,749 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,781 | INFO     | [job] job monitor thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,868 | INFO     | [data] control thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,878 | INFO     | [payload] validate_post thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,932 | INFO     | [job] validate thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:42,983 | INFO     | all job control threads have been joined
[2025-12-03 10:32:49] 2025-12-03 09:31:43,043 | INFO     | [data] copytool_in thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:43,169 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:43,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 10:32:49] 2025-12-03 09:31:43,615 | INFO     | [payload] failed_post thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:43,669 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:43,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:43,952 | INFO     | [data] copytool_out thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:43,989 | INFO     | [job] control thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:31:47,393 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 10:32:49] 2025-12-03 09:32:10,780 | INFO     | PID=9666 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 10:32:49] 2025-12-03 09:32:10,780 | INFO     | .. there are 9 such processes running
[2025-12-03 10:32:49] 2025-12-03 09:32:10,780 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 10:32:49] 2025-12-03 09:32:10,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 10:32:49] 2025-12-03 09:32:10,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 10:32:49] 2025-12-03 09:32:38,621 | INFO     | [monitor] cgroup control has ended
[2025-12-03 10:32:49] 2025-12-03 09:32:40,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140557341419328)>', '<ExcThread(monitor, started 140556604786432)>']
[2025-12-03 10:32:49] 2025-12-03 09:32:40,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 10:32:49] 2025-12-03 09:32:40,961 | INFO     | [monitor] control thread has ended
[2025-12-03 10:32:49] 2025-12-03 09:32:45,234 | INFO     | all workflow threads have been joined
[2025-12-03 10:32:49] 2025-12-03 09:32:45,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 10:32:49] 2025-12-03 09:32:45,235 | INFO     | traces error code: 0
[2025-12-03 10:32:49] 2025-12-03 09:32:45,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 10:32:49] 2025-12-03 09:32:45,437 [wrapper] ==== pilot stdout END ====
[2025-12-03 10:32:49] 2025-12-03 09:32:45,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 10:32:49] 2025-12-03 09:32:45,505 [wrapper] pilotpid: 9666
[2025-12-03 10:32:49] 2025-12-03 09:32:45,544 [wrapper] Pilot exit status: 0
[2025-12-03 10:32:49] 2025-12-03 09:32:45,912 [wrapper] pandaids: 6905330623
[2025-12-03 10:32:49] 2025-12-03 09:32:46,860 [wrapper] cleanup supervisor_pilot 13196 9667
[2025-12-03 10:32:49] 2025-12-03 09:32:46,907 [wrapper] Test setup, not cleaning
[2025-12-03 10:32:49] 2025-12-03 09:32:47,018 [wrapper] apfmon messages muted
[2025-12-03 10:32:49] 2025-12-03 09:32:47,075 [wrapper] ==== wrapper stdout END ====
[2025-12-03 10:32:49] 2025-12-03 09:32:47,164 [wrapper] ==== wrapper stderr END ====
[2025-12-03 10:32:49]  *** Error codes and diagnostics ***
[2025-12-03 10:32:49]     "exeErrorCode": 0,
[2025-12-03 10:32:49]     "exeErrorDiag": "",
[2025-12-03 10:32:49]     "pilotErrorCode": 0,
[2025-12-03 10:32:49]     "pilotErrorDiag": "",
[2025-12-03 10:32:49]  *** Listing of results directory ***
[2025-12-03 10:32:49] total 1074304
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 10:32:49] -rwx------. 1 boinc boinc     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:18 queuedata.json
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc       100 Dec  2 16:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 10:32:49] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 16:02 run_atlas
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc       105 Dec  2 16:02 job.xml
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc      6392 Dec  2 16:02 init_data.xml
[2025-12-03 10:32:49] -rw-r--r--. 2 boinc boinc 377140653 Dec  2 16:02 EVNT.47530720._000051.pool.root.1
[2025-12-03 10:32:49] -rw-r--r--. 2 boinc boinc     15847 Dec  2 16:02 start_atlas.sh
[2025-12-03 10:32:49] drwxrwx--x. 2 boinc boinc        68 Dec  2 16:02 shared
[2025-12-03 10:32:49] -rw-r--r--. 2 boinc boinc    590128 Dec  2 16:02 input.tar.gz
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc         0 Dec  2 16:02 boinc_lockfile
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc      2878 Dec  2 16:02 pandaJob.out
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc    986791 Dec  2 16:06 agis_schedconf.cvmfs.json
[2025-12-03 10:32:49] drwx------. 5 boinc boinc      4096 Dec  2 16:06 pilot3
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc       533 Dec  3 10:20 boinc_task_state.xml
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc 696643459 Dec  3 10:30 HITS.47530725._001762.pool.root.1
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc        95 Dec  3 10:31 pilot_heartbeat.json
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc      1032 Dec  3 10:31 memory_monitor_summary.json
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc   1516240 Dec  3 10:31 agis_ddmendpoints.agis.ALL.json
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc   2329744 Dec  3 10:31 log.47530725._001762.job.log.tgz.1
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc     27585 Dec  3 10:31 heartbeat.json
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc      8192 Dec  3 10:32 boinc_mmap_file
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc        29 Dec  3 10:32 wrapper_checkpoint.txt
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc      5070 Dec  3 10:32 pilotlog.txt
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc   8858080 Dec  3 10:32 log.47530725._001762.job.log.1
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc       353 Dec  3 10:32 output.list
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc       620 Dec  3 10:32 runtime_log
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc  11223040 Dec  3 10:32 result.tar.gz
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc      8833 Dec  3 10:32 runtime_log.err
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc       661 Dec  3 10:32 2L3KDmoJkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVIPKDmFWYPOn.diag
[2025-12-03 10:32:49] -rw-r--r--. 1 boinc boinc     21025 Dec  3 10:32 stderr.txt
[2025-12-03 10:32:49] HITS file was successfully produced:
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc 696643459 Dec  3 10:30 shared/HITS.pool.root.1
[2025-12-03 10:32:49]  *** Contents of shared directory: ***
[2025-12-03 10:32:49] total 1060176
[2025-12-03 10:32:49] -rw-r--r--. 2 boinc boinc 377140653 Dec  2 16:02 ATLAS.root_0
[2025-12-03 10:32:49] -rw-r--r--. 2 boinc boinc     15847 Dec  2 16:02 start_atlas.sh
[2025-12-03 10:32:49] -rw-r--r--. 2 boinc boinc    590128 Dec  2 16:02 input.tar.gz
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc 696643459 Dec  3 10:30 HITS.pool.root.1
[2025-12-03 10:32:49] -rw-------. 1 boinc boinc  11223040 Dec  3 10:32 result.tar.gz
10:32:51 (5893): run_atlas exited; CPU time 249316.400246
10:32:51 (5893): called boinc_finish(0)

</stderr_txt>
]]>

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