Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:56:50 (1013723): wrapper (7.7.26015): starting
10:56:50 (1013723): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 10:56:50] Arguments: --nthreads 12
[2025-12-01 10:56:50] Threads: 12
[2025-12-01 10:56:50] Checking for CVMFS
[2025-12-01 10:56:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 10:56:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 10:56:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 10:56:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 10:56:50] 2.13.3.0 9777 14106 99172 153512 3 101 3713056 4097024 1037 130560 0 10678854 99.974 744117 1892 http://cernvmfs.gridpp.rl.ac.uk/cvmfs/atlas.cern.ch http://188.185.48.238:3128 1
[2025-12-01 10:56:50] CVMFS is ok
[2025-12-01 10:56:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 10:56:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 10:56:50] Further information can be found at the LHC@home message board.
[2025-12-01 10:56:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 10:56:50] Checking for apptainer binary...
[2025-12-01 10:56:50] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-12-01 10:56:50] apptainer is not installed, using version from CVMFS
[2025-12-01 10:56:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 10:56:50] pckelar6.cern.ch
[2025-12-01 10:56:50] apptainer works
[2025-12-01 10:56:50] Set ATHENA_PROC_NUMBER=12
[2025-12-01 10:56:50] Set ATHENA_CORE_NUMBER=12
[2025-12-01 10:56:50] Starting ATLAS job with PandaID=6905025966
[2025-12-01 10:56:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 16:44:51]  *** The last 200 lines of the pilot log: ***
[2025-12-01 16:44:51] 2025-12-01 15:44:12,039 | INFO     | time since job start (20831s) is within the limit (172800.0s)
[2025-12-01 16:44:51] 2025-12-01 15:44:14,045 | INFO     | time since job start (20833s) is within the limit (172800.0s)
[2025-12-01 16:44:51] 2025-12-01 15:44:14,176 | INFO     | monitor loop #1511: job 0:6905025966 is in state 'finished'
[2025-12-01 16:44:51] 2025-12-01 15:44:14,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:44:51] 2025-12-01 15:44:16,051 | INFO     | time since job start (20835s) is within the limit (172800.0s)
[2025-12-01 16:44:51] 2025-12-01 15:44:16,679 | INFO     | monitor loop #1512: job 0:6905025966 is in state 'finished'
[2025-12-01 16:44:51] 2025-12-01 15:44:16,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,057 | INFO     | time since job start (20837s) is within the limit (172800.0s)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,201 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 16:44:51] 2025-12-01 15:44:18,208 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2799.7965416666666
[2025-12-01 16:44:51] 2025-12-01 15:44:18,214 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6905025966/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,215 | INFO     | extracted standard info from prmon json
[2025-12-01 16:44:51] 2025-12-01 15:44:18,215 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 16:44:51] 2025-12-01 15:44:18,215 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 16:44:51] 2025-12-01 15:44:18,215 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 16:44:51] 2025-12-01 15:44:18,216 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 16:44:51] 2025-12-01 15:44:18,227 | INFO     | fitting pss+swap vs Time
[2025-12-01 16:44:51] 2025-12-01 15:44:18,227 | INFO     | sum of square deviations: 12295263090.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,232 | INFO     | sum of deviations: 67509505382.999985
[2025-12-01 16:44:51] 2025-12-01 15:44:18,232 | INFO     | mean x: 1764593444.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,232 | INFO     | mean y: 2787199.539589443
[2025-12-01 16:44:51] 2025-12-01 15:44:18,232 | INFO     | intersect: -9686052293.729399
[2025-12-01 16:44:51] 2025-12-01 15:44:18,233 | INFO     | chi2: 4.359183783153242
[2025-12-01 16:44:51] 2025-12-01 15:44:18,234 | INFO     | sum of square deviations: 11762304260.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,238 | INFO     | sum of deviations: 90704693895.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,238 | INFO     | mean x: 1764593291.5
[2025-12-01 16:44:51] 2025-12-01 15:44:18,238 | INFO     | mean y: 2793754.273809524
[2025-12-01 16:44:51] 2025-12-01 15:44:18,238 | INFO     | intersect: -13604820095.589144
[2025-12-01 16:44:51] 2025-12-01 15:44:18,239 | INFO     | chi2: 3.6778954847169736
[2025-12-01 16:44:51] 2025-12-01 15:44:18,239 | INFO     | current chi2=3.6778954847169736 (change=15.628804205714264 %)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,239 | INFO     | right removable region: 335
[2025-12-01 16:44:51] 2025-12-01 15:44:18,240 | INFO     | sum of square deviations: 11762304260.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,244 | INFO     | sum of deviations: -43912504655.5
[2025-12-01 16:44:51] 2025-12-01 15:44:18,245 | INFO     | mean x: 1764593596.5
[2025-12-01 16:44:51] 2025-12-01 15:44:18,245 | INFO     | mean y: 2819021.6696428573
[2025-12-01 16:44:51] 2025-12-01 15:44:18,245 | INFO     | intersect: 6590620425.930523
[2025-12-01 16:44:51] 2025-12-01 15:44:18,246 | INFO     | chi2: 1.1022463608587953
[2025-12-01 16:44:51] 2025-12-01 15:44:18,246 | INFO     | current chi2=1.1022463608587953 (change=74.7143865528542 %)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,246 | INFO     | sum of square deviations: 11244973630.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,251 | INFO     | sum of deviations: -63911939066.00001
[2025-12-01 16:44:51] 2025-12-01 15:44:18,251 | INFO     | mean x: 1764593749.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,251 | INFO     | mean y: 2824896.5558912386
[2025-12-01 16:44:51] 2025-12-01 15:44:18,251 | INFO     | intersect: 10032071017.81447
[2025-12-01 16:44:51] 2025-12-01 15:44:18,252 | INFO     | chi2: 0.9682068329731945
[2025-12-01 16:44:51] 2025-12-01 15:44:18,252 | INFO     | current chi2=0.9682068329731945 (change=12.160577947489555 %)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,252 | INFO     | left removable region: 20
[2025-12-01 16:44:51] 2025-12-01 15:44:18,253 | INFO     | sum of square deviations: 9691828230.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,257 | INFO     | sum of deviations: -33287600021.00001
[2025-12-01 16:44:51] 2025-12-01 15:44:18,257 | INFO     | mean x: 1764593871.0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,257 | INFO     | mean y: 2830205.723809524
[2025-12-01 16:44:51] 2025-12-01 15:44:18,257 | INFO     | intersect: 6063512832.71627
[2025-12-01 16:44:51] 2025-12-01 15:44:18,258 | INFO     | chi2: 0.19728589052788872
[2025-12-01 16:44:51] 2025-12-01 15:44:18,258 | INFO     | current memory leak: -3.43 B/s (using 315 data points, chi2=0.20)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,259 | INFO     | could have reported an average CPU frequency of 2802 MHz (15 samples)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,259 | INFO     | ..............................
[2025-12-01 16:44:51] 2025-12-01 15:44:18,259 | INFO     | . Timing measurements:
[2025-12-01 16:44:51] 2025-12-01 15:44:18,260 | INFO     | . get job = 0 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,260 | INFO     | . initial setup = 1 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,260 | INFO     | . payload setup = 31 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,260 | INFO     | . stage-in = 0 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,260 | INFO     | . payload execution = 20772 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,260 | INFO     | . stage-out = 1 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,261 | INFO     | . log creation = 0 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,261 | INFO     | ..............................
[2025-12-01 16:44:51] 2025-12-01 15:44:18,527 | INFO     | 
[2025-12-01 16:44:51] 2025-12-01 15:44:18,527 | INFO     | job summary report
[2025-12-01 16:44:51] 2025-12-01 15:44:18,528 | INFO     | --------------------------------------------------
[2025-12-01 16:44:51] 2025-12-01 15:44:18,528 | INFO     | PanDA job id: 6905025966
[2025-12-01 16:44:51] 2025-12-01 15:44:18,528 | INFO     | task id: 47523969
[2025-12-01 16:44:51] 2025-12-01 15:44:18,528 | INFO     | errors: (none)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 16:44:51] 2025-12-01 15:44:18,528 | INFO     | pilot state: finished 
[2025-12-01 16:44:51] 2025-12-01 15:44:18,529 | INFO     | transexitcode: 0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,529 | INFO     | exeerrorcode: 0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,529 | INFO     | exeerrordiag: 
[2025-12-01 16:44:51] 2025-12-01 15:44:18,529 | INFO     | exitcode: 0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,529 | INFO     | exitmsg: OK
[2025-12-01 16:44:51] 2025-12-01 15:44:18,529 | INFO     | cpuconsumptiontime: 227784 s
[2025-12-01 16:44:51] 2025-12-01 15:44:18,530 | INFO     | nevents: 400
[2025-12-01 16:44:51] 2025-12-01 15:44:18,530 | INFO     | neventsw: 0
[2025-12-01 16:44:51] 2025-12-01 15:44:18,530 | INFO     | pid: 1025109
[2025-12-01 16:44:51] 2025-12-01 15:44:18,530 | INFO     | pgrp: 1025109
[2025-12-01 16:44:51] 2025-12-01 15:44:18,530 | INFO     | corecount: 12
[2025-12-01 16:44:51] 2025-12-01 15:44:18,530 | INFO     | event service: False
[2025-12-01 16:44:51] 2025-12-01 15:44:18,533 | INFO     | sizes: {0: 2283724, 1: 2283923, 6: 2284185, 12: 2284213, 20807: 2317665, 20808: 2317664, 20810: 2326846, 20811: 2326902, 20820: 2327096}
[2025-12-01 16:44:51] 2025-12-01 15:44:18,533 | INFO     | --------------------------------------------------
[2025-12-01 16:44:51] 2025-12-01 15:44:18,533 | INFO     | 
[2025-12-01 16:44:51] 2025-12-01 15:44:18,534 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-01 16:44:51] 2025-12-01 15:44:18,558 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,559 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,559 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,559 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,559 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,559 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 16:44:51] 2025-12-01 15:44:18,562 | INFO     | job 6905025966 has completed (purged errors)
[2025-12-01 16:44:51] 2025-12-01 15:44:18,562 | INFO     | overall cleanup function is called
[2025-12-01 16:44:51] 2025-12-01 15:44:19,573 | INFO     | --- collectZombieJob: --- 10, [1025109]
[2025-12-01 16:44:51] 2025-12-01 15:44:19,573 | INFO     | zombie collector waiting for pid 1025109
[2025-12-01 16:44:51] 2025-12-01 15:44:19,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 16:44:51] 2025-12-01 15:44:19,574 | INFO     | collected zombie processes
[2025-12-01 16:44:51] 2025-12-01 15:44:19,574 | INFO     | will attempt to kill all subprocesses of pid=1025109
[2025-12-01 16:44:51] 2025-12-01 15:44:19,779 | INFO     | process IDs to be killed: [1025109] (in reverse order)
[2025-12-01 16:44:51] 2025-12-01 15:44:19,852 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 16:44:51] 2025-12-01 15:44:19,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 16:44:51] 2025-12-01 15:44:19,859 | INFO     | did not find any defunct processes belonging to 1025109
[2025-12-01 16:44:51] 2025-12-01 15:44:19,866 | INFO     | did not find any defunct processes belonging to 1025109
[2025-12-01 16:44:51] 2025-12-01 15:44:19,868 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 16:44:51] 2025-12-01 15:44:19,868 | INFO     | ready for new job
[2025-12-01 16:44:51] 2025-12-01 15:44:19,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 16:44:51] 2025-12-01 15:44:19,871 | INFO     | ***************************************
[2025-12-01 16:44:51] 2025-12-01 15:44:19,872 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 16:44:51] 2025-12-01 15:44:19,872 | INFO     | ***************************************
[2025-12-01 16:44:51] 2025-12-01 15:44:19,872 | INFO     | 
[2025-12-01 16:44:51] 2025-12-01 15:44:19,874 | INFO     | architecture information:
[2025-12-01 16:44:51] 2025-12-01 15:44:19,874 | INFO     | executing command: cat /etc/os-release
[2025-12-01 16:44:51] 2025-12-01 15:44:19,903 | INFO     | cat /etc/os-release:
[2025-12-01 16:44:51] NAME="CentOS Linux"
[2025-12-01 16:44:51] VERSION="7 (Core)"
[2025-12-01 16:44:51] ID="centos"
[2025-12-01 16:44:51] ID_LIKE="rhel fedora"
[2025-12-01 16:44:51] VERSION_ID="7"
[2025-12-01 16:44:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 16:44:51] ANSI_COLOR="0;31"
[2025-12-01 16:44:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 16:44:51] HOME_URL="https://www.centos.org/"
[2025-12-01 16:44:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 16:44:51] 
[2025-12-01 16:44:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 16:44:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 16:44:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 16:44:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 16:44:51] 
[2025-12-01 16:44:51] 2025-12-01 15:44:19,904 | INFO     | ***************************************
[2025-12-01 16:44:51] 2025-12-01 15:44:20,407 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-01 16:44:51] 2025-12-01 15:44:20,436 | INFO     | sufficient remaining disk space (868180033536 B)
[2025-12-01 16:44:51] 2025-12-01 15:44:20,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 16:44:51] 2025-12-01 15:44:20,437 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 16:44:51] 2025-12-01 15:44:20,437 | INFO     | update_server=False
[2025-12-01 16:44:51] 2025-12-01 15:44:20,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 16:44:51] 2025-12-01 15:44:20,438 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 16:44:51] 2025-12-01 15:44:20,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:44:51] 2025-12-01 15:44:20,439 | INFO     | aborting loop
[2025-12-01 16:44:51] 2025-12-01 15:44:20,935 | INFO     | all data control threads have been joined
[2025-12-01 16:44:51] 2025-12-01 15:44:21,006 | INFO     | all payload control threads have been joined
[2025-12-01 16:44:51] 2025-12-01 15:44:21,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 16:44:51] 2025-12-01 15:44:21,443 | INFO     | [job] retrieve thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:21,444 | INFO     | [job] job monitor thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:21,941 | INFO     | [data] control thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,004 | INFO     | [payload] failed_post thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,012 | INFO     | [payload] control thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,121 | INFO     | all job control threads have been joined
[2025-12-01 16:44:51] 2025-12-01 15:44:22,216 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,436 | INFO     | [job] validate thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,439 | INFO     | [data] copytool_in thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,841 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,854 | INFO     | [payload] validate_post thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,871 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:22,937 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:23,122 | INFO     | [job] control thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:23,392 | INFO     | [data] copytool_out thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:23,442 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:44:51] 2025-12-01 15:44:24,444 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:24,448 | INFO     | [job] queue monitor thread has finished
[2025-12-01 16:44:51] 2025-12-01 15:44:35,464 | INFO     | [monitor] cgroup control has ended
[2025-12-01 16:44:51] 2025-12-01 15:44:36,941 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398200018752)>', '<ExcThread(monitor, started 140397800036096)>']
[2025-12-01 16:44:51] 2025-12-01 15:44:41,967 | INFO     | all workflow threads have been joined
[2025-12-01 16:44:51] 2025-12-01 15:44:41,967 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 16:44:51] 2025-12-01 15:44:41,968 | INFO     | traces error code: 0
[2025-12-01 16:44:51] 2025-12-01 15:44:41,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 16:44:51] 2025-12-01 15:44:51,432 | INFO     | PID=1017575 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 16:44:51] 2025-12-01 15:44:51,433 | INFO     | .. there are 2 such processes running
[2025-12-01 16:44:51] 2025-12-01 15:44:51,433 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 16:44:51] 2025-12-01 15:44:51,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 16:44:51] 2025-12-01 15:44:51,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 16:44:51] 2025-12-01 15:44:51,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 16:44:51] 2025-12-01 15:44:51,434 | INFO     | [monitor] control thread has ended
[2025-12-01 16:44:51] 2025-12-01 15:44:51,672 [wrapper] ==== pilot stdout END ====
[2025-12-01 16:44:51] 2025-12-01 15:44:51,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 16:44:51] 2025-12-01 15:44:51,680 [wrapper] pilotpid: 1017575
[2025-12-01 16:44:51] 2025-12-01 15:44:51,684 [wrapper] Pilot exit status: 0
[2025-12-01 16:44:51] 2025-12-01 15:44:51,697 [wrapper] pandaids: 6905025966
[2025-12-01 16:44:51] 2025-12-01 15:44:51,741 [wrapper] cleanup supervisor_pilot 1160468 1017576
[2025-12-01 16:44:51] 2025-12-01 15:44:51,745 [wrapper] Test setup, not cleaning
[2025-12-01 16:44:51] 2025-12-01 15:44:51,750 [wrapper] apfmon messages muted
[2025-12-01 16:44:51] 2025-12-01 15:44:51,754 [wrapper] ==== wrapper stdout END ====
[2025-12-01 16:44:51] 2025-12-01 15:44:51,758 [wrapper] ==== wrapper stderr END ====
[2025-12-01 16:44:51]  *** Error codes and diagnostics ***
[2025-12-01 16:44:51]     "exeErrorCode": 0,
[2025-12-01 16:44:51]     "exeErrorDiag": "",
[2025-12-01 16:44:51]     "pilotErrorCode": 0,
[2025-12-01 16:44:51]     "pilotErrorDiag": "",
[2025-12-01 16:44:51]  *** Listing of results directory ***
[2025-12-01 16:44:51] total 622904
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:17 queuedata.json
[2025-12-01 16:44:51] -rwx------. 1 boinc boinc     36292 Nov 30 01:17 runpilot2-wrapper.sh
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc       100 Dec  1 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 16:44:51] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 10:56 run_atlas
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc       105 Dec  1 10:56 job.xml
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc      6293 Dec  1 10:56 init_data.xml
[2025-12-01 16:44:51] -rw-r--r--. 2 boinc boinc 294784083 Dec  1 10:56 EVNT.47523965._000010.pool.root.1
[2025-12-01 16:44:51] -rw-r--r--. 2 boinc boinc     15847 Dec  1 10:56 start_atlas.sh
[2025-12-01 16:44:51] drwxrwx--x. 2 boinc boinc        68 Dec  1 10:56 shared
[2025-12-01 16:44:51] -rw-r--r--. 2 boinc boinc    589946 Dec  1 10:56 input.tar.gz
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc         0 Dec  1 10:56 boinc_lockfile
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc      2606 Dec  1 10:56 pandaJob.out
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc    992532 Dec  1 10:56 agis_schedconf.cvmfs.json
[2025-12-01 16:44:51] drwx------. 5 boinc boinc      4096 Dec  1 10:57 pilot3
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc 332162608 Dec  1 16:43 HITS.47523969._000220.pool.root.1
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc       532 Dec  1 16:43 boinc_task_state.xml
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc      1026 Dec  1 16:44 memory_monitor_summary.json
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc        95 Dec  1 16:44 pilot_heartbeat.json
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc   1516240 Dec  1 16:44 agis_ddmendpoints.agis.ALL.json
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc    612019 Dec  1 16:44 log.47523969._000220.job.log.tgz.1
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc      7794 Dec  1 16:44 heartbeat.json
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc        29 Dec  1 16:44 wrapper_checkpoint.txt
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc      8192 Dec  1 16:44 boinc_mmap_file
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc       822 Dec  1 16:44 pilotlog.txt
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc   2893858 Dec  1 16:44 log.47523969._000220.job.log.1
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc       357 Dec  1 16:44 output.list
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc       620 Dec  1 16:44 runtime_log
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc   3522560 Dec  1 16:44 result.tar.gz
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc      8842 Dec  1 16:44 runtime_log.err
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc       662 Dec  1 16:44 LWfKDmeJkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVGPKDm6oQhyn.diag
[2025-12-01 16:44:51] -rw-r--r--. 1 boinc boinc     21552 Dec  1 16:44 stderr.txt
[2025-12-01 16:44:51] HITS file was successfully produced:
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc 332162608 Dec  1 16:43 shared/HITS.pool.root.1
[2025-12-01 16:44:51]  *** Contents of shared directory: ***
[2025-12-01 16:44:51] total 616296
[2025-12-01 16:44:51] -rw-r--r--. 2 boinc boinc 294784083 Dec  1 10:56 ATLAS.root_0
[2025-12-01 16:44:51] -rw-r--r--. 2 boinc boinc     15847 Dec  1 10:56 start_atlas.sh
[2025-12-01 16:44:51] -rw-r--r--. 2 boinc boinc    589946 Dec  1 10:56 input.tar.gz
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc 332162608 Dec  1 16:43 HITS.pool.root.1
[2025-12-01 16:44:51] -rw-------. 1 boinc boinc   3522560 Dec  1 16:44 result.tar.gz
16:44:52 (1013723): run_atlas exited; CPU time 228317.295918
16:44:52 (1013723): called boinc_finish(0)

</stderr_txt>
]]>

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