Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:13:31 (24388): wrapper (7.7.26015): starting
20:13:31 (24388): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 20:13:31] Arguments: --nthreads 8
[2025-12-02 20:13:31] Threads: 8
[2025-12-02 20:13:31] Checking for CVMFS
[2025-12-02 20:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 20:13:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 20:13:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 20:13:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 20:13:34] 2.11.2.0 21112 181221 138740 153566 2 84 16168584 25165825 2358 130560 9 57277514 99.884 30229399 2090 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 20:13:34] CVMFS is ok
[2025-12-02 20:13:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 20:13:34] Checking for apptainer binary...
[2025-12-02 20:13:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 20:13:34] Running /usr/bin/apptainer --version
[2025-12-02 20:13:34] apptainer version 1.3.2-1.el7
[2025-12-02 20:13:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 20:13:38] cg-vwn263.simple-grid.lan
[2025-12-02 20:13:38] apptainer works
[2025-12-02 20:13:38] Set ATHENA_PROC_NUMBER=8
[2025-12-02 20:13:38] Set ATHENA_CORE_NUMBER=8
[2025-12-02 20:13:38] Starting ATLAS job with PandaID=6897995342
[2025-12-02 20:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 16:22:44]  *** The last 200 lines of the pilot log: ***
[2025-12-03 16:22:44] 2025-12-03 15:21:58,621 | INFO     | monitor loop #4953: job 0:6897995342 is in state 'finished'
[2025-12-03 16:22:44] 2025-12-03 15:21:58,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:22:44] 2025-12-03 15:21:58,792 | INFO     | time since job start (72278s) is within the limit (172800.0s)
[2025-12-03 16:22:44] 2025-12-03 15:22:00,800 | INFO     | time since job start (72280s) is within the limit (172800.0s)
[2025-12-03 16:22:44] 2025-12-03 15:22:01,134 | INFO     | monitor loop #4954: job 0:6897995342 is in state 'finished'
[2025-12-03 16:22:44] 2025-12-03 15:22:01,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:22:44] 2025-12-03 15:22:02,813 | INFO     | time since job start (72282s) is within the limit (172800.0s)
[2025-12-03 16:22:44] 2025-12-03 15:22:03,643 | INFO     | monitor loop #4955: job 0:6897995342 is in state 'finished'
[2025-12-03 16:22:44] 2025-12-03 15:22:03,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:22:44] 2025-12-03 15:22:04,820 | INFO     | time since job start (72284s) is within the limit (172800.0s)
[2025-12-03 16:22:44] 2025-12-03 15:22:06,012 | INFO     | PID=28202 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 16:22:44] 2025-12-03 15:22:06,012 | INFO     | .. there are 9 such processes running
[2025-12-03 16:22:44] 2025-12-03 15:22:06,150 | INFO     | monitor loop #4956: job 0:6897995342 is in state 'finished'
[2025-12-03 16:22:44] 2025-12-03 15:22:06,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:22:44] 2025-12-03 15:22:07,014 | INFO     | time since job start (72287s) is within the limit (172800.0s)
[2025-12-03 16:22:44] 2025-12-03 15:22:07,617 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 16:22:44] 2025-12-03 15:22:07,618 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 16:22:44] 2025-12-03 15:22:07,620 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6897995342/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 16:22:44] 2025-12-03 15:22:07,620 | INFO     | extracted standard info from prmon json
[2025-12-03 16:22:44] 2025-12-03 15:22:07,620 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 16:22:44] 2025-12-03 15:22:07,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 16:22:44] 2025-12-03 15:22:07,652 | INFO     | fitting pss+swap vs Time
[2025-12-03 16:22:44] 2025-12-03 15:22:07,654 | INFO     | sum of square deviations: 500464922867.9404
[2025-12-03 16:22:44] 2025-12-03 15:22:07,716 | INFO     | sum of deviations: 4008472125641.203
[2025-12-03 16:22:44] 2025-12-03 15:22:07,717 | INFO     | mean x: 1764739448.0775788
[2025-12-03 16:22:44] 2025-12-03 15:22:07,717 | INFO     | mean y: 3321550.1295822677
[2025-12-03 16:22:44] 2025-12-03 15:22:07,717 | INFO     | intersect: -14131353156.14356
[2025-12-03 16:22:44] 2025-12-03 15:22:07,719 | INFO     | chi2: 24.986538888734128
[2025-12-03 16:22:44] 2025-12-03 15:22:07,721 | INFO     | sum of square deviations: 494092760992.11017
[2025-12-03 16:22:44] 2025-12-03 15:22:07,784 | INFO     | sum of deviations: 4501033805828.605
[2025-12-03 16:22:44] 2025-12-03 15:22:07,784 | INFO     | mean x: 1764739295.5821917
[2025-12-03 16:22:44] 2025-12-03 15:22:07,784 | INFO     | mean y: 3333339.9520547944
[2025-12-03 16:22:44] 2025-12-03 15:22:07,784 | INFO     | intersect: -16072901438.190025
[2025-12-03 16:22:44] 2025-12-03 15:22:07,786 | INFO     | chi2: 21.44773764544485
[2025-12-03 16:22:44] 2025-12-03 15:22:07,790 | INFO     | current chi2=21.44773764544485 (change=14.162830870844797 %)
[2025-12-03 16:22:44] 2025-12-03 15:22:07,790 | INFO     | right removable region: 1167
[2025-12-03 16:22:44] 2025-12-03 15:22:07,792 | INFO     | sum of square deviations: 494091989952.1096
[2025-12-03 16:22:44] 2025-12-03 15:22:07,862 | INFO     | sum of deviations: 3415049687543.1636
[2025-12-03 16:22:44] 2025-12-03 15:22:07,862 | INFO     | mean x: 1764739600.5821917
[2025-12-03 16:22:44] 2025-12-03 15:22:07,862 | INFO     | mean y: 3335750.805650685
[2025-12-03 16:22:44] 2025-12-03 15:22:07,862 | INFO     | intersect: -12194136671.58153
[2025-12-03 16:22:44] 2025-12-03 15:22:07,864 | INFO     | chi2: 19.685983012507787
[2025-12-03 16:22:44] 2025-12-03 15:22:07,864 | INFO     | current chi2=19.685983012507787 (change=21.213645874804385 %)
[2025-12-03 16:22:44] 2025-12-03 15:22:07,864 | INFO     | left removable region: 10
[2025-12-03 16:22:44] 2025-12-03 15:22:07,866 | INFO     | sum of square deviations: 480263364969.10583
[2025-12-03 16:22:44] 2025-12-03 15:22:07,912 | INFO     | sum of deviations: 3468742178877.407
[2025-12-03 16:22:44] 2025-12-03 15:22:07,912 | INFO     | mean x: 1764739570.0924807
[2025-12-03 16:22:44] 2025-12-03 15:22:07,912 | INFO     | mean y: 3363913.5756266206
[2025-12-03 16:22:44] 2025-12-03 15:22:07,913 | INFO     | intersect: -12742614705.692047
[2025-12-03 16:22:44] 2025-12-03 15:22:07,914 | INFO     | chi2: 10.65238552481114
[2025-12-03 16:22:44] 2025-12-03 15:22:07,914 | INFO     | current memory leak: 7.22 B/s (using 1157 data points, chi2=10.65)
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | ..............................
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | . Timing measurements:
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | . get job = 0 s
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | . initial setup = 11 s
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | . payload setup = 302 s
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | . stage-in = 0 s
[2025-12-03 16:22:44] 2025-12-03 15:22:07,916 | INFO     | . payload execution = 71694 s
[2025-12-03 16:22:44] 2025-12-03 15:22:07,917 | INFO     | . stage-out = 5 s
[2025-12-03 16:22:44] 2025-12-03 15:22:07,917 | INFO     | . log creation = 2 s
[2025-12-03 16:22:44] 2025-12-03 15:22:07,917 | INFO     | ..............................
[2025-12-03 16:22:44] 2025-12-03 15:22:08,413 | INFO     | 
[2025-12-03 16:22:44] 2025-12-03 15:22:08,413 | INFO     | job summary report
[2025-12-03 16:22:44] 2025-12-03 15:22:08,413 | INFO     | --------------------------------------------------
[2025-12-03 16:22:44] 2025-12-03 15:22:08,413 | INFO     | PanDA job id: 6897995342
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | task id: 47531111
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | errors: (none)
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | pilot state: finished 
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | transexitcode: 0
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | exeerrorcode: 0
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | exeerrordiag: 
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | exitcode: 0
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | exitmsg: OK
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | cpuconsumptiontime: 262005 s
[2025-12-03 16:22:44] 2025-12-03 15:22:08,414 | INFO     | nevents: 1000
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | neventsw: 0
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | pid: 3052
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | pgrp: 3052
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | corecount: 8
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | event service: False
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | sizes: {0: 2284274, 1: 2284473, 12: 2284473, 23: 2284501, 34: 2284529, 44: 2284557, 55: 2284713, 66: 2284741, 77: 2284769, 87: 2284825, 94: 2285115, 98: 2285423, 7
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | --------------------------------------------------
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | 
[2025-12-03 16:22:44] 2025-12-03 15:22:08,415 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-12-03 16:22:44] 2025-12-03 15:22:09,021 | INFO     | time since job start (72289s) is within the limit (172800.0s)
[2025-12-03 16:22:44] 2025-12-03 15:22:09,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 16:22:44] 2025-12-03 15:22:09,187 | INFO     | job 6897995342 has completed (purged errors)
[2025-12-03 16:22:44] 2025-12-03 15:22:09,188 | INFO     | overall cleanup function is called
[2025-12-03 16:22:44] 2025-12-03 15:22:10,203 | INFO     | --- collectZombieJob: --- 10, [3052]
[2025-12-03 16:22:44] 2025-12-03 15:22:10,203 | INFO     | zombie collector waiting for pid 3052
[2025-12-03 16:22:44] 2025-12-03 15:22:10,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 16:22:44] 2025-12-03 15:22:10,204 | INFO     | collected zombie processes
[2025-12-03 16:22:44] 2025-12-03 15:22:10,204 | INFO     | will attempt to kill all subprocesses of pid=3052
[2025-12-03 16:22:44] 2025-12-03 15:22:10,326 | INFO     | process IDs to be killed: [3052] (in reverse order)
[2025-12-03 16:22:44] 2025-12-03 15:22:11,174 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 16:22:44] 2025-12-03 15:22:11,174 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 16:22:44] 2025-12-03 15:22:11,178 | INFO     | did not find any defunct processes belonging to 3052
[2025-12-03 16:22:44] 2025-12-03 15:22:11,181 | INFO     | did not find any defunct processes belonging to 3052
[2025-12-03 16:22:44] 2025-12-03 15:22:11,227 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 16:22:44] 2025-12-03 15:22:11,228 | INFO     | ready for new job
[2025-12-03 16:22:44] 2025-12-03 15:22:11,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 16:22:44] 2025-12-03 15:22:11,232 | INFO     | ***************************************
[2025-12-03 16:22:44] 2025-12-03 15:22:11,232 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 16:22:44] 2025-12-03 15:22:11,232 | INFO     | ***************************************
[2025-12-03 16:22:44] 2025-12-03 15:22:11,233 | INFO     | 
[2025-12-03 16:22:44] 2025-12-03 15:22:11,233 | INFO     | pilot is running in a VM
[2025-12-03 16:22:44] 2025-12-03 15:22:11,233 | INFO     | architecture information:
[2025-12-03 16:22:44] 2025-12-03 15:22:11,245 | INFO     | executing command: cat /etc/os-release
[2025-12-03 16:22:44] 2025-12-03 15:22:11,528 | INFO     | cat /etc/os-release:
[2025-12-03 16:22:44] NAME="CentOS Linux"
[2025-12-03 16:22:44] VERSION="7 (Core)"
[2025-12-03 16:22:44] ID="centos"
[2025-12-03 16:22:44] ID_LIKE="rhel fedora"
[2025-12-03 16:22:44] VERSION_ID="7"
[2025-12-03 16:22:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 16:22:44] ANSI_COLOR="0;31"
[2025-12-03 16:22:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 16:22:44] HOME_URL="https://www.centos.org/"
[2025-12-03 16:22:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 16:22:44] 
[2025-12-03 16:22:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 16:22:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 16:22:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 16:22:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 16:22:44] 
[2025-12-03 16:22:44] 2025-12-03 15:22:11,529 | INFO     | ***************************************
[2025-12-03 16:22:44] 2025-12-03 15:22:12,032 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-12-03 16:22:44] 2025-12-03 15:22:12,259 | INFO     | sufficient remaining disk space (489067380736 B)
[2025-12-03 16:22:44] 2025-12-03 15:22:12,259 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 16:22:44] 2025-12-03 15:22:12,259 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 16:22:44] 2025-12-03 15:22:12,259 | INFO     | update_server=False
[2025-12-03 16:22:44] 2025-12-03 15:22:12,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 16:22:44] 2025-12-03 15:22:12,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 16:22:44] 2025-12-03 15:22:12,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 16:22:44] 2025-12-03 15:22:12,262 | INFO     | aborting loop
[2025-12-03 16:22:44] 2025-12-03 15:22:12,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 16:22:44] 2025-12-03 15:22:13,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 16:22:44] 2025-12-03 15:22:13,222 | INFO     | all data control threads have been joined
[2025-12-03 16:22:44] 2025-12-03 15:22:13,224 | INFO     | all payload control threads have been joined
[2025-12-03 16:22:44] 2025-12-03 15:22:13,265 | INFO     | [job] retrieve thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:13,268 | INFO     | [job] job monitor thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:13,785 | INFO     | all job control threads have been joined
[2025-12-03 16:22:44] 2025-12-03 15:22:13,821 | INFO     | [payload] validate_post thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:13,881 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,099 | INFO     | [job] queue monitor thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,184 | INFO     | [data] copytool_in thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,185 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,198 | INFO     | [payload] failed_post thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,228 | INFO     | [data] control thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,230 | INFO     | [payload] control thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,346 | INFO     | [job] validate thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,348 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,414 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,761 | INFO     | [data] copytool_out thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:14,791 | INFO     | [job] control thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:16,270 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 16:22:44] 2025-12-03 15:22:25,642 | INFO     | [monitor] cgroup control has ended
[2025-12-03 16:22:44] 2025-12-03 15:22:26,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742843033408)>', '<ExcThread(monitor, started 139742129682176)>']
[2025-12-03 16:22:44] 2025-12-03 15:22:31,500 | INFO     | all workflow threads have been joined
[2025-12-03 16:22:44] 2025-12-03 15:22:31,500 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 16:22:44] 2025-12-03 15:22:31,501 | INFO     | traces error code: 0
[2025-12-03 16:22:44] 2025-12-03 15:22:31,501 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 16:22:44] 2025-12-03 15:22:42,182 | INFO     | PID=28202 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 16:22:44] 2025-12-03 15:22:42,183 | INFO     | .. there are 9 such processes running
[2025-12-03 16:22:44] 2025-12-03 15:22:42,183 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 16:22:44] 2025-12-03 15:22:42,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 16:22:44] 2025-12-03 15:22:42,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 16:22:44] 2025-12-03 15:22:42,183 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 16:22:44] 2025-12-03 15:22:42,183 | INFO     | [monitor] control thread has ended
[2025-12-03 16:22:44] 2025-12-03 15:22:42,346 [wrapper] ==== pilot stdout END ====
[2025-12-03 16:22:44] 2025-12-03 15:22:42,406 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 16:22:44] 2025-12-03 15:22:42,470 [wrapper] pilotpid: 28202
[2025-12-03 16:22:44] 2025-12-03 15:22:42,559 [wrapper] Pilot exit status: 0
[2025-12-03 16:22:44] 2025-12-03 15:22:42,813 [wrapper] pandaids: 6897995342
[2025-12-03 16:22:44] 2025-12-03 15:22:43,575 [wrapper] cleanup supervisor_pilot 27339 28203
[2025-12-03 16:22:44] 2025-12-03 15:22:43,688 [wrapper] Test setup, not cleaning
[2025-12-03 16:22:44] 2025-12-03 15:22:43,809 [wrapper] apfmon messages muted
[2025-12-03 16:22:44] 2025-12-03 15:22:43,919 [wrapper] ==== wrapper stdout END ====
[2025-12-03 16:22:44] 2025-12-03 15:22:44,002 [wrapper] ==== wrapper stderr END ====
[2025-12-03 16:22:44]  *** Error codes and diagnostics ***
[2025-12-03 16:22:44]     "exeErrorCode": 0,
[2025-12-03 16:22:44]     "exeErrorDiag": "",
[2025-12-03 16:22:44]     "pilotErrorCode": 0,
[2025-12-03 16:22:44]     "pilotErrorDiag": "",
[2025-12-03 16:22:44]  *** Listing of results directory ***
[2025-12-03 16:22:44] total 1061608
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc      5112 Nov 28 23:41 queuedata.json
[2025-12-03 16:22:44] -rwx------. 1 boinc boinc     36292 Nov 28 23:42 runpilot2-wrapper.sh
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc       100 Dec  2 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 16:22:44] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 20:13 run_atlas
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc       105 Dec  2 20:13 job.xml
[2025-12-03 16:22:44] -rw-r--r--. 2 boinc boinc 376811116 Dec  2 20:13 EVNT.47531104._000048.pool.root.1
[2025-12-03 16:22:44] -rw-r--r--. 2 boinc boinc     15847 Dec  2 20:13 start_atlas.sh
[2025-12-03 16:22:44] drwxrwx--x. 2 boinc boinc        68 Dec  2 20:13 shared
[2025-12-03 16:22:44] -rw-r--r--. 2 boinc boinc    590117 Dec  2 20:13 input.tar.gz
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc      6392 Dec  2 20:13 init_data.xml
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc         0 Dec  2 20:13 boinc_lockfile
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc      2876 Dec  2 20:13 pandaJob.out
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc    989224 Dec  2 20:17 agis_schedconf.cvmfs.json
[2025-12-03 16:22:44] drwx------. 5 boinc boinc      4096 Dec  2 20:17 pilot3
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc       533 Dec  3 16:09 boinc_task_state.xml
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc 682155717 Dec  3 16:19 HITS.47531111._000421.pool.root.1
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc      1031 Dec  3 16:20 memory_monitor_summary.json
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc   1516240 Dec  3 16:20 agis_ddmendpoints.agis.ALL.json
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc   2411624 Dec  3 16:20 log.47531111._000421.job.log.tgz.1
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc        95 Dec  3 16:22 pilot_heartbeat.json
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc     27572 Dec  3 16:22 heartbeat.json
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc        29 Dec  3 16:22 wrapper_checkpoint.txt
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc      8192 Dec  3 16:22 boinc_mmap_file
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc       820 Dec  3 16:22 pilotlog.txt
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc   9680238 Dec  3 16:22 log.47531111._000421.job.log.1
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc       353 Dec  3 16:22 output.list
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc       620 Dec  3 16:22 runtime_log
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc  12134400 Dec  3 16:22 result.tar.gz
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc       661 Dec  3 16:22 U98LDmILMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfQLKDmG28fQn.diag
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc      8833 Dec  3 16:22 runtime_log.err
[2025-12-03 16:22:44] -rw-r--r--. 1 boinc boinc     21444 Dec  3 16:22 stderr.txt
[2025-12-03 16:22:44] HITS file was successfully produced:
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc 682155717 Dec  3 16:19 shared/HITS.pool.root.1
[2025-12-03 16:22:44]  *** Contents of shared directory: ***
[2025-12-03 16:22:44] total 1046596
[2025-12-03 16:22:44] -rw-r--r--. 2 boinc boinc 376811116 Dec  2 20:13 ATLAS.root_0
[2025-12-03 16:22:44] -rw-r--r--. 2 boinc boinc     15847 Dec  2 20:13 start_atlas.sh
[2025-12-03 16:22:44] -rw-r--r--. 2 boinc boinc    590117 Dec  2 20:13 input.tar.gz
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc 682155717 Dec  3 16:19 HITS.pool.root.1
[2025-12-03 16:22:44] -rw-------. 1 boinc boinc  12134400 Dec  3 16:22 result.tar.gz
16:22:46 (24388): run_atlas exited; CPU time 262400.821175
16:22:46 (24388): called boinc_finish(0)

</stderr_txt>
]]>

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