Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:27:36 (241635): wrapper (7.7.26015): starting
10:27:36 (241635): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 10:27:36] Arguments: --nthreads 4
[2025-12-03 10:27:36] Threads: 4
[2025-12-03 10:27:36] Checking for CVMFS
[2025-12-03 10:27:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 10:27:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 10:27:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 10:27:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 10:27:37] 2.9.2.0 1273053 21738 111788 153587 0 68 36548031 36864000 0 130560 1 8871395 99.908 1402776 878 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-03 10:27:37] CVMFS is ok
[2025-12-03 10:27:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 10:27:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 10:27:37] Further information can be found at the LHC@home message board.
[2025-12-03 10:27:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 10:27:37] Checking for apptainer binary...
[2025-12-03 10:27:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 10:27:37] Running /usr/bin/apptainer --version
[2025-12-03 10:27:37] apptainer version 1.4.1-1.1
[2025-12-03 10:27:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 10:27:37] thA325
[2025-12-03 10:27:37] apptainer works
[2025-12-03 10:27:37] Set ATHENA_PROC_NUMBER=4
[2025-12-03 10:27:37] Set ATHENA_CORE_NUMBER=4
[2025-12-03 10:27:37] Starting ATLAS job with PandaID=6900759093
[2025-12-03 10:27:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 17:01:44]  *** The last 200 lines of the pilot log: ***
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | job 6900759093 has completed (purged errors)
[2025-12-03 17:01:44] 2025-12-03 16:01:12,202 | INFO     | overall cleanup function is called
[2025-12-03 17:01:44] 2025-12-03 16:01:13,211 | INFO     | --- collectZombieJob: --- 10, [251992]
[2025-12-03 17:01:44] 2025-12-03 16:01:13,211 | INFO     | zombie collector waiting for pid 251992
[2025-12-03 17:01:44] 2025-12-03 16:01:13,212 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 17:01:44] 2025-12-03 16:01:13,212 | INFO     | collected zombie processes
[2025-12-03 17:01:44] 2025-12-03 16:01:13,212 | INFO     | will attempt to kill all subprocesses of pid=251992
[2025-12-03 17:01:44] 2025-12-03 16:01:13,256 | INFO     | process IDs to be killed: [251992] (in reverse order)
[2025-12-03 17:01:44] 2025-12-03 16:01:13,287 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 17:01:44] 2025-12-03 16:01:13,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 17:01:44] 2025-12-03 16:01:13,289 | INFO     | did not find any defunct processes belonging to 251992
[2025-12-03 17:01:44] 2025-12-03 16:01:13,290 | INFO     | did not find any defunct processes belonging to 251992
[2025-12-03 17:01:44] 2025-12-03 16:01:13,291 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 17:01:44] 2025-12-03 16:01:13,291 | INFO     | ready for new job
[2025-12-03 17:01:44] 2025-12-03 16:01:13,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 17:01:44] 2025-12-03 16:01:13,292 | INFO     | ***************************************
[2025-12-03 17:01:44] 2025-12-03 16:01:13,292 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 17:01:44] 2025-12-03 16:01:13,292 | INFO     | ***************************************
[2025-12-03 17:01:44] 2025-12-03 16:01:13,292 | INFO     | 
[2025-12-03 17:01:44] 2025-12-03 16:01:13,293 | INFO     | architecture information:
[2025-12-03 17:01:44] 2025-12-03 16:01:13,293 | INFO     | executing command: cat /etc/os-release
[2025-12-03 17:01:44] 2025-12-03 16:01:13,306 | INFO     | cat /etc/os-release:
[2025-12-03 17:01:44] NAME="CentOS Linux"
[2025-12-03 17:01:44] VERSION="7 (Core)"
[2025-12-03 17:01:44] ID="centos"
[2025-12-03 17:01:44] ID_LIKE="rhel fedora"
[2025-12-03 17:01:44] VERSION_ID="7"
[2025-12-03 17:01:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 17:01:44] ANSI_COLOR="0;31"
[2025-12-03 17:01:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 17:01:44] HOME_URL="https://www.centos.org/"
[2025-12-03 17:01:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 17:01:44] 
[2025-12-03 17:01:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 17:01:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 17:01:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 17:01:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 17:01:44] 
[2025-12-03 17:01:44] 2025-12-03 16:01:13,306 | INFO     | ***************************************
[2025-12-03 17:01:44] 2025-12-03 16:01:13,809 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 17:01:44] 2025-12-03 16:01:13,827 | INFO     | sufficient remaining disk space (220347760640 B)
[2025-12-03 17:01:44] 2025-12-03 16:01:13,827 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 17:01:44] 2025-12-03 16:01:13,827 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 17:01:44] 2025-12-03 16:01:13,827 | INFO     | update_server=False
[2025-12-03 17:01:44] 2025-12-03 16:01:13,827 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 17:01:44] 2025-12-03 16:01:13,827 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 17:01:44] 2025-12-03 16:01:13,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:01:44] 2025-12-03 16:01:13,955 | INFO     | all data control threads have been joined
[2025-12-03 17:01:44] 2025-12-03 16:01:14,385 | INFO     | all payload control threads have been joined
[2025-12-03 17:01:44] 2025-12-03 16:01:14,804 | INFO     | all job control threads have been joined
[2025-12-03 17:01:44] 2025-12-03 16:01:14,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:01:44] 2025-12-03 16:01:14,821 | INFO     | aborting loop
[2025-12-03 17:01:44] 2025-12-03 16:01:14,833 | INFO     | [job] retrieve thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:14,833 | INFO     | [job] queue monitor thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:14,960 | INFO     | [data] control thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 17:01:44] 2025-12-03 16:01:15,116 | INFO     | [data] copytool_in thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,294 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,391 | INFO     | [payload] control thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,506 | INFO     | [job] validate thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,513 | INFO     | [payload] failed_post thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,810 | INFO     | [job] control thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,826 | INFO     | [job] job monitor thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,833 | INFO     | [data] copytool_out thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,846 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:15,936 | INFO     | [payload] validate_post thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:16,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:16,183 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:17,092 | INFO     | [monitor] cgroup control has ended
[2025-12-03 17:01:44] 2025-12-03 16:01:19,008 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 17:01:44] 2025-12-03 16:01:19,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140680726034240)>', '<ExcThread(monitor, started 140680101881600)>']
[2025-12-03 17:01:44] 2025-12-03 16:01:24,154 | INFO     | all workflow threads have been joined
[2025-12-03 17:01:44] 2025-12-03 16:01:24,155 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 17:01:44] 2025-12-03 16:01:24,155 | INFO     | traces error code: 0
[2025-12-03 17:01:44] 2025-12-03 16:01:24,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 17:01:44] 2025-12-03 16:01:43,890 | INFO     | PID=245427 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 17:01:44] 2025-12-03 16:01:43,891 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 17:01:44] 2025-12-03 16:01:43,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 17:01:44] 2025-12-03 16:01:43,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 17:01:44] 2025-12-03 16:01:43,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 17:01:44] 2025-12-03 16:01:43,891 | INFO     | [monitor] control thread has ended
[2025-12-03 17:01:44] 2025-12-03 16:01:43,955 [wrapper] ==== pilot stdout END ====
[2025-12-03 17:01:44] 2025-12-03 16:01:43,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 17:01:44] 2025-12-03 16:01:43,963 [wrapper] pilotpid: 245427
[2025-12-03 17:01:44] 2025-12-03 16:01:43,967 [wrapper] Pilot exit status: 0
[2025-12-03 17:01:44] 2025-12-03 16:01:43,977 [wrapper] pandaids: 6900759093
[2025-12-03 17:01:44] 2025-12-03 16:01:43,999 [wrapper] cleanup supervisor_pilot  293527 245428
[2025-12-03 17:01:44] 2025-12-03 16:01:44,003 [wrapper] Test setup, not cleaning
[2025-12-03 17:01:44] 2025-12-03 16:01:44,006 [wrapper] apfmon messages muted
[2025-12-03 17:01:44] 2025-12-03 16:01:44,010 [wrapper] ==== wrapper stdout END ====
[2025-12-03 17:01:44] 2025-12-03 16:01:44,013 [wrapper] ==== wrapper stderr END ====
[2025-12-03 17:01:44]  *** Error codes and diagnostics ***
[2025-12-03 17:01:44]     "exeErrorCode": 0,
[2025-12-03 17:01:44]     "exeErrorDiag": "",
[2025-12-03 17:01:44]     "pilotErrorCode": 0,
[2025-12-03 17:01:44]     "pilotErrorDiag": "",
[2025-12-03 17:01:44]  *** Listing of results directory ***
[2025-12-03 17:01:44] total 1299272
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-03 17:01:44] -rwx------ 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc      5112 Nov 28 02:01 queuedata.json
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc       100 Dec  3 10:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 17:01:44] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 10:27 run_atlas
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc       105 Dec  3 10:27 job.xml
[2025-12-03 17:01:44] -rw-r--r-- 2 boinc boinc 409153903 Dec  3 10:27 EVNT.47483658._003479.pool.root.1
[2025-12-03 17:01:44] -rw-r--r-- 2 boinc boinc    590109 Dec  3 10:27 input.tar.gz
[2025-12-03 17:01:44] -rw-r--r-- 2 boinc boinc     15847 Dec  3 10:27 start_atlas.sh
[2025-12-03 17:01:44] drwxrwx--x 2 boinc boinc      4096 Dec  3 10:27 shared
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc         0 Dec  3 10:27 boinc_setup_complete
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc      6369 Dec  3 10:27 init_data.xml
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc         0 Dec  3 10:27 boinc_lockfile
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc      2787 Dec  3 10:27 pandaJob.out
[2025-12-03 17:01:44] -rw------- 1 boinc boinc    985783 Dec  3 10:27 agis_schedconf.cvmfs.json
[2025-12-03 17:01:44] drwx------ 5 boinc boinc      4096 Dec  3 10:27 pilot3
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc       532 Dec  3 16:56 boinc_task_state.xml
[2025-12-03 17:01:44] -rw------- 1 boinc boinc 908286037 Dec  3 17:00 HITS.47556173._004354.pool.root.1
[2025-12-03 17:01:44] -rw------- 1 boinc boinc        95 Dec  3 17:00 pilot_heartbeat.json
[2025-12-03 17:01:44] -rw------- 1 boinc boinc      1027 Dec  3 17:01 memory_monitor_summary.json
[2025-12-03 17:01:44] -rw------- 1 boinc boinc   1516240 Dec  3 17:01 agis_ddmendpoints.agis.ALL.json
[2025-12-03 17:01:44] -rw------- 1 boinc boinc   1235792 Dec  3 17:01 log.47556173._004354.job.log.tgz.1
[2025-12-03 17:01:44] -rw------- 1 boinc boinc      8570 Dec  3 17:01 heartbeat.json
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc      8192 Dec  3 17:01 boinc_mmap_file
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc        28 Dec  3 17:01 wrapper_checkpoint.txt
[2025-12-03 17:01:44] -rw------- 1 boinc boinc       746 Dec  3 17:01 pilotlog.txt
[2025-12-03 17:01:44] -rw------- 1 boinc boinc   3325466 Dec  3 17:01 log.47556173._004354.job.log.1
[2025-12-03 17:01:44] -rw------- 1 boinc boinc       353 Dec  3 17:01 output.list
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc       620 Dec  3 17:01 runtime_log
[2025-12-03 17:01:44] -rw------- 1 boinc boinc   4577280 Dec  3 17:01 result.tar.gz
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc      8898 Dec  3 17:01 runtime_log.err
[2025-12-03 17:01:44] -rw------- 1 boinc boinc       665 Dec  3 17:01 CDFODmR11i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIBOKDmqoU4rm.diag
[2025-12-03 17:01:44] -rw-r--r-- 1 boinc boinc     11835 Dec  3 17:01 stderr.txt
[2025-12-03 17:01:44] HITS file was successfully produced:
[2025-12-03 17:01:44] -rw------- 1 boinc boinc 908286037 Dec  3 17:00 shared/HITS.pool.root.1
[2025-12-03 17:01:44]  *** Contents of shared directory: ***
[2025-12-03 17:01:44] total 1291644
[2025-12-03 17:01:44] -rw-r--r-- 2 boinc boinc 409153903 Dec  3 10:27 ATLAS.root_0
[2025-12-03 17:01:44] -rw-r--r-- 2 boinc boinc    590109 Dec  3 10:27 input.tar.gz
[2025-12-03 17:01:44] -rw-r--r-- 2 boinc boinc     15847 Dec  3 10:27 start_atlas.sh
[2025-12-03 17:01:44] -rw------- 1 boinc boinc 908286037 Dec  3 17:00 HITS.pool.root.1
[2025-12-03 17:01:44] -rw------- 1 boinc boinc   4577280 Dec  3 17:01 result.tar.gz
17:01:45 (241635): run_atlas exited; CPU time 92094.835355
17:01:45 (241635): called boinc_finish(0)

</stderr_txt>
]]>

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