Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:42:18 (26328): wrapper (7.7.26015): starting
08:42:18 (26328): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 08:42:18] Arguments: --nthreads 8
[2025-12-01 08:42:18] Threads: 8
[2025-12-01 08:42:18] Checking for CVMFS
[2025-12-01 08:42:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 08:42:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 08:42:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 08:42:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 08:42:22] 2.11.2.0 14391 292110 143952 153510 0 269 22195939 25165824 2504 130560 11 132349075 99.875 76037614 2793 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 08:42:22] CVMFS is ok
[2025-12-01 08:42:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 08:42:22] Checking for apptainer binary...
[2025-12-01 08:42:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 08:42:22] Running /usr/bin/apptainer --version
[2025-12-01 08:42:22] apptainer version 1.3.2-1.el7
[2025-12-01 08:42:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 08:42:38] cg-vwn338.simple-grid.lan
[2025-12-01 08:42:38] apptainer works
[2025-12-01 08:42:38] Set ATHENA_PROC_NUMBER=8
[2025-12-01 08:42:38] Set ATHENA_CORE_NUMBER=8
[2025-12-01 08:42:38] Starting ATLAS job with PandaID=6899133458
[2025-12-01 08:42:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:43:12]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:43:12] 2025-12-02 03:42:27,108 | INFO     | monitor loop #4861: job 0:6899133458 is in state 'finished'
[2025-12-02 04:43:12] 2025-12-02 03:42:27,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:43:12] 2025-12-02 03:42:28,714 | INFO     | time since job start (71749s) is within the limit (172800.0s)
[2025-12-02 04:43:12] 2025-12-02 03:42:29,613 | INFO     | monitor loop #4862: job 0:6899133458 is in state 'finished'
[2025-12-02 04:43:12] 2025-12-02 03:42:29,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:43:12] 2025-12-02 03:42:30,721 | INFO     | time since job start (71751s) is within the limit (172800.0s)
[2025-12-02 04:43:12] 2025-12-02 03:42:32,121 | INFO     | monitor loop #4863: job 0:6899133458 is in state 'finished'
[2025-12-02 04:43:12] 2025-12-02 03:42:32,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:43:12] 2025-12-02 03:42:32,728 | INFO     | time since job start (71753s) is within the limit (172800.0s)
[2025-12-02 04:43:12] 2025-12-02 03:42:34,626 | INFO     | monitor loop #4864: job 0:6899133458 is in state 'finished'
[2025-12-02 04:43:12] 2025-12-02 03:42:34,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:43:12] 2025-12-02 03:42:34,735 | INFO     | time since job start (71755s) is within the limit (172800.0s)
[2025-12-02 04:43:12] 2025-12-02 03:42:35,921 | INFO     | PID=30137 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 04:43:12] 2025-12-02 03:42:35,921 | INFO     | .. there are 9 such processes running
[2025-12-02 04:43:12] 2025-12-02 03:42:36,186 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 04:43:12] 2025-12-02 03:42:36,187 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 04:43:12] 2025-12-02 03:42:36,189 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6899133458/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,190 | INFO     | extracted standard info from prmon json
[2025-12-02 04:43:12] 2025-12-02 03:42:36,190 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:43:12] 2025-12-02 03:42:36,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:43:12] 2025-12-02 03:42:36,215 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:43:12] 2025-12-02 03:42:36,217 | INFO     | sum of square deviations: 489031528948.46344
[2025-12-02 04:43:12] 2025-12-02 03:42:36,257 | INFO     | sum of deviations: 2785172437637.711
[2025-12-02 04:43:12] 2025-12-02 03:42:36,257 | INFO     | mean x: 1764611338.5214777
[2025-12-02 04:43:12] 2025-12-02 03:42:36,257 | INFO     | mean y: 3321300.191580756
[2025-12-02 04:43:12] 2025-12-02 03:42:36,258 | INFO     | intersect: -10046637797.048853
[2025-12-02 04:43:12] 2025-12-02 03:42:36,259 | INFO     | chi2: 24.02746736924923
[2025-12-02 04:43:12] 2025-12-02 03:42:36,261 | INFO     | sum of square deviations: 482756964633.22375
[2025-12-02 04:43:12] 2025-12-02 03:42:36,305 | INFO     | sum of deviations: 3258768578266.298
[2025-12-02 04:43:12] 2025-12-02 03:42:36,305 | INFO     | mean x: 1764611186.0258844
[2025-12-02 04:43:12] 2025-12-02 03:42:36,305 | INFO     | mean y: 3332812.7566867988
[2025-12-02 04:43:12] 2025-12-02 03:42:36,305 | INFO     | intersect: -11908374127.084787
[2025-12-02 04:43:12] 2025-12-02 03:42:36,307 | INFO     | chi2: 20.532072907703935
[2025-12-02 04:43:12] 2025-12-02 03:42:36,307 | INFO     | current chi2=20.532072907703935 (change=14.547494364798355 %)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,307 | INFO     | right removable region: 1158
[2025-12-02 04:43:12] 2025-12-02 03:42:36,309 | INFO     | sum of square deviations: 482756239343.22363
[2025-12-02 04:43:12] 2025-12-02 03:42:36,344 | INFO     | sum of deviations: 2198919063051.7666
[2025-12-02 04:43:12] 2025-12-02 03:42:36,344 | INFO     | mean x: 1764611491.0258844
[2025-12-02 04:43:12] 2025-12-02 03:42:36,345 | INFO     | mean y: 3335547.374460742
[2025-12-02 04:43:12] 2025-12-02 03:42:36,345 | INFO     | intersect: -8034339639.9539795
[2025-12-02 04:43:12] 2025-12-02 03:42:36,346 | INFO     | chi2: 18.98074377788838
[2025-12-02 04:43:12] 2025-12-02 03:42:36,346 | INFO     | current chi2=18.98074377788838 (change=21.00397646495083 %)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,347 | INFO     | left removable region: 10
[2025-12-02 04:43:12] 2025-12-02 03:42:36,348 | INFO     | sum of square deviations: 469140901227.5358
[2025-12-02 04:43:12] 2025-12-02 03:42:36,387 | INFO     | sum of deviations: 2245823554491.643
[2025-12-02 04:43:12] 2025-12-02 03:42:36,387 | INFO     | mean x: 1764611460.5357144
[2025-12-02 04:43:12] 2025-12-02 03:42:36,387 | INFO     | mean y: 3363343.7160278745
[2025-12-02 04:43:12] 2025-12-02 03:42:36,387 | INFO     | intersect: -8444004967.653884
[2025-12-02 04:43:12] 2025-12-02 03:42:36,389 | INFO     | chi2: 10.276565987205881
[2025-12-02 04:43:12] 2025-12-02 03:42:36,389 | INFO     | current memory leak: 4.79 B/s (using 1148 data points, chi2=10.28)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,391 | INFO     | could have reported an average CPU frequency of 1999 MHz (40 samples)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,391 | INFO     | ..............................
[2025-12-02 04:43:12] 2025-12-02 03:42:36,391 | INFO     | . Timing measurements:
[2025-12-02 04:43:12] 2025-12-02 03:42:36,391 | INFO     | . get job = 0 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,391 | INFO     | . initial setup = 5 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,391 | INFO     | . payload setup = 312 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,391 | INFO     | . stage-in = 0 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,392 | INFO     | . payload execution = 71148 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,392 | INFO     | . stage-out = 3 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,392 | INFO     | . log creation = 0 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,392 | INFO     | ..............................
[2025-12-02 04:43:12] 2025-12-02 03:42:36,745 | INFO     | 
[2025-12-02 04:43:12] 2025-12-02 03:42:36,745 | INFO     | job summary report
[2025-12-02 04:43:12] 2025-12-02 03:42:36,745 | INFO     | --------------------------------------------------
[2025-12-02 04:43:12] 2025-12-02 03:42:36,745 | INFO     | PanDA job id: 6899133458
[2025-12-02 04:43:12] 2025-12-02 03:42:36,745 | INFO     | task id: 47531058
[2025-12-02 04:43:12] 2025-12-02 03:42:36,745 | INFO     | errors: (none)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | pilot state: finished 
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | transexitcode: 0
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | exeerrorcode: 0
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | exeerrordiag: 
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | exitcode: 0
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | exitmsg: OK
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | cpuconsumptiontime: 266749 s
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | nevents: 1000
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | neventsw: 0
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | pid: 4995
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | pgrp: 4995
[2025-12-02 04:43:12] 2025-12-02 03:42:36,746 | INFO     | corecount: 8
[2025-12-02 04:43:12] 2025-12-02 03:42:36,747 | INFO     | event service: False
[2025-12-02 04:43:12] 2025-12-02 03:42:36,747 | INFO     | sizes: {0: 2284283, 1: 2284482, 12: 2284482, 23: 2284510, 33: 2284538, 44: 2284594, 55: 2284750, 66: 2284778, 76: 2284806, 87: 2284862, 89: 2285152, 98: 2285460, 7
[2025-12-02 04:43:12] 2025-12-02 03:42:36,747 | INFO     | --------------------------------------------------
[2025-12-02 04:43:12] 2025-12-02 03:42:36,747 | INFO     | 
[2025-12-02 04:43:12] 2025-12-02 03:42:36,747 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-12-02 04:43:12] 2025-12-02 03:42:36,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,858 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:43:12] 2025-12-02 03:42:36,859 | INFO     | job 6899133458 has completed (purged errors)
[2025-12-02 04:43:12] 2025-12-02 03:42:36,859 | INFO     | overall cleanup function is called
[2025-12-02 04:43:12] 2025-12-02 03:42:37,883 | INFO     | --- collectZombieJob: --- 10, [4995]
[2025-12-02 04:43:12] 2025-12-02 03:42:37,883 | INFO     | zombie collector waiting for pid 4995
[2025-12-02 04:43:12] 2025-12-02 03:42:37,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:43:12] 2025-12-02 03:42:37,883 | INFO     | collected zombie processes
[2025-12-02 04:43:12] 2025-12-02 03:42:37,883 | INFO     | will attempt to kill all subprocesses of pid=4995
[2025-12-02 04:43:12] 2025-12-02 03:42:38,007 | INFO     | process IDs to be killed: [4995] (in reverse order)
[2025-12-02 04:43:12] 2025-12-02 03:42:38,245 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:43:12] 2025-12-02 03:42:38,246 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:43:12] 2025-12-02 03:42:38,253 | INFO     | did not find any defunct processes belonging to 4995
[2025-12-02 04:43:12] 2025-12-02 03:42:38,256 | INFO     | did not find any defunct processes belonging to 4995
[2025-12-02 04:43:12] 2025-12-02 03:42:38,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:43:12] 2025-12-02 03:42:38,315 | INFO     | ready for new job
[2025-12-02 04:43:12] 2025-12-02 03:42:38,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:43:12] 2025-12-02 03:42:38,320 | INFO     | ***************************************
[2025-12-02 04:43:12] 2025-12-02 03:42:38,320 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:43:12] 2025-12-02 03:42:38,320 | INFO     | ***************************************
[2025-12-02 04:43:12] 2025-12-02 03:42:38,320 | INFO     | 
[2025-12-02 04:43:12] 2025-12-02 03:42:38,321 | INFO     | pilot is running in a VM
[2025-12-02 04:43:12] 2025-12-02 03:42:38,321 | INFO     | architecture information:
[2025-12-02 04:43:12] 2025-12-02 03:42:38,333 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:43:12] 2025-12-02 03:42:38,680 | INFO     | cat /etc/os-release:
[2025-12-02 04:43:12] NAME="CentOS Linux"
[2025-12-02 04:43:12] VERSION="7 (Core)"
[2025-12-02 04:43:12] ID="centos"
[2025-12-02 04:43:12] ID_LIKE="rhel fedora"
[2025-12-02 04:43:12] VERSION_ID="7"
[2025-12-02 04:43:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:43:12] ANSI_COLOR="0;31"
[2025-12-02 04:43:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:43:12] HOME_URL="https://www.centos.org/"
[2025-12-02 04:43:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:43:12] 
[2025-12-02 04:43:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:43:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:43:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:43:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:43:12] 
[2025-12-02 04:43:12] 2025-12-02 03:42:38,680 | INFO     | ***************************************
[2025-12-02 04:43:12] 2025-12-02 03:42:39,184 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-12-02 04:43:12] 2025-12-02 03:42:39,447 | INFO     | sufficient remaining disk space (488771682304 B)
[2025-12-02 04:43:12] 2025-12-02 03:42:39,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:43:12] 2025-12-02 03:42:39,448 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:43:12] 2025-12-02 03:42:39,448 | INFO     | update_server=False
[2025-12-02 04:43:12] 2025-12-02 03:42:39,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:43:12] 2025-12-02 03:42:39,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:43:12] 2025-12-02 03:42:39,640 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 04:43:12] 2025-12-02 03:42:39,640 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 04:43:12] 2025-12-02 03:42:39,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:43:12] 2025-12-02 03:42:39,640 | INFO     | will abort loop
[2025-12-02 04:43:12] 2025-12-02 03:42:39,649 | INFO     | all data control threads have been joined
[2025-12-02 04:43:12] 2025-12-02 03:42:39,871 | INFO     | all payload control threads have been joined
[2025-12-02 04:43:12] 2025-12-02 03:42:39,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:43:12] 2025-12-02 03:42:40,454 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:40,549 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:40,645 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:40,655 | INFO     | [data] control thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:40,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:40,877 | INFO     | [payload] control thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:40,905 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:41,033 | INFO     | all job control threads have been joined
[2025-12-02 04:43:12] 2025-12-02 03:42:41,153 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:41,290 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:41,398 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:41,414 | INFO     | [job] validate thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:41,455 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:41,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:43:12] 2025-12-02 03:42:41,682 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:42,039 | INFO     | [job] control thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:42,567 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:43,369 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:43:12] 2025-12-02 03:42:44,006 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:43:12] 2025-12-02 03:42:45,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862412093248)>', '<ExcThread(monitor, started 139861818324736)>']
[2025-12-02 04:43:12] 2025-12-02 03:42:50,719 | INFO     | all workflow threads have been joined
[2025-12-02 04:43:12] 2025-12-02 03:42:50,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:43:12] 2025-12-02 03:42:50,719 | INFO     | traces error code: 0
[2025-12-02 04:43:12] 2025-12-02 03:42:50,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:43:12] 2025-12-02 03:43:08,121 | INFO     | PID=30137 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 04:43:12] 2025-12-02 03:43:08,121 | INFO     | .. there are 9 such processes running
[2025-12-02 04:43:12] 2025-12-02 03:43:08,122 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:43:12] 2025-12-02 03:43:08,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:43:12] 2025-12-02 03:43:08,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:43:12] 2025-12-02 03:43:08,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:43:12] 2025-12-02 03:43:08,126 | INFO     | [monitor] control thread has ended
[2025-12-02 04:43:12] 2025-12-02 03:43:08,367 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:43:12] 2025-12-02 03:43:08,427 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:43:12] 2025-12-02 03:43:08,515 [wrapper] pilotpid: 30137
[2025-12-02 04:43:12] 2025-12-02 03:43:08,603 [wrapper] Pilot exit status: 0
[2025-12-02 04:43:12] 2025-12-02 03:43:08,862 [wrapper] pandaids: 6899133458
[2025-12-02 04:43:12] 2025-12-02 03:43:09,490 [wrapper] cleanup supervisor_pilot 23044 30138
[2025-12-02 04:43:12] 2025-12-02 03:43:09,580 [wrapper] Test setup, not cleaning
[2025-12-02 04:43:12] 2025-12-02 03:43:09,635 [wrapper] apfmon messages muted
[2025-12-02 04:43:12] 2025-12-02 03:43:09,716 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:43:12] 2025-12-02 03:43:09,777 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:43:12]  *** Error codes and diagnostics ***
[2025-12-02 04:43:12]     "exeErrorCode": 0,
[2025-12-02 04:43:12]     "exeErrorDiag": "",
[2025-12-02 04:43:12]     "pilotErrorCode": 0,
[2025-12-02 04:43:12]     "pilotErrorDiag": "",
[2025-12-02 04:43:12]  *** Listing of results directory ***
[2025-12-02 04:43:12] total 1076984
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-02 04:43:12] -rwx------. 1 boinc boinc     36292 Nov 28 23:43 runpilot2-wrapper.sh
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc      5112 Nov 28 23:43 queuedata.json
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc       100 Dec  1 08:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:43:12] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 08:42 run_atlas
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc       105 Dec  1 08:42 job.xml
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc      6383 Dec  1 08:42 init_data.xml
[2025-12-02 04:43:12] -rw-r--r--. 2 boinc boinc 377072098 Dec  1 08:42 EVNT.47531050._000503.pool.root.1
[2025-12-02 04:43:12] -rw-r--r--. 2 boinc boinc     15847 Dec  1 08:42 start_atlas.sh
[2025-12-02 04:43:12] drwxrwx--x. 2 boinc boinc        68 Dec  1 08:42 shared
[2025-12-02 04:43:12] -rw-r--r--. 2 boinc boinc    590118 Dec  1 08:42 input.tar.gz
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc         0 Dec  1 08:42 boinc_lockfile
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc      2880 Dec  1 08:42 pandaJob.out
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc    992521 Dec  1 08:46 agis_schedconf.cvmfs.json
[2025-12-02 04:43:12] drwx------. 5 boinc boinc      4096 Dec  1 08:46 pilot3
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc       533 Dec  2 04:21 boinc_task_state.xml
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc 697944776 Dec  2 04:40 HITS.47531058._001202.pool.root.1
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc      1027 Dec  2 04:40 memory_monitor_summary.json
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc   1516240 Dec  2 04:41 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc   2394810 Dec  2 04:41 log.47531058._001202.job.log.tgz.1
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc     27582 Dec  2 04:42 heartbeat.json
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc        29 Dec  2 04:43 wrapper_checkpoint.txt
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc      8192 Dec  2 04:43 boinc_mmap_file
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc        95 Dec  2 04:43 pilot_heartbeat.json
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc       820 Dec  2 04:43 pilotlog.txt
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc   9547323 Dec  2 04:43 log.47531058._001202.job.log.1
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc       353 Dec  2 04:43 output.list
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc       620 Dec  2 04:43 runtime_log
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc  11980800 Dec  2 04:43 result.tar.gz
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc      8833 Dec  2 04:43 runtime_log.err
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc       661 Dec  2 04:43 PtYMDmUMMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1RLKDmxUJYKn.diag
[2025-12-02 04:43:12] -rw-r--r--. 1 boinc boinc     21493 Dec  2 04:43 stderr.txt
[2025-12-02 04:43:12] HITS file was successfully produced:
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc 697944776 Dec  2 04:40 shared/HITS.pool.root.1
[2025-12-02 04:43:12]  *** Contents of shared directory: ***
[2025-12-02 04:43:12] total 1062120
[2025-12-02 04:43:12] -rw-r--r--. 2 boinc boinc 377072098 Dec  1 08:42 ATLAS.root_0
[2025-12-02 04:43:12] -rw-r--r--. 2 boinc boinc     15847 Dec  1 08:42 start_atlas.sh
[2025-12-02 04:43:12] -rw-r--r--. 2 boinc boinc    590118 Dec  1 08:42 input.tar.gz
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc 697944776 Dec  2 04:40 HITS.pool.root.1
[2025-12-02 04:43:12] -rw-------. 1 boinc boinc  11980800 Dec  2 04:43 result.tar.gz
04:43:14 (26328): run_atlas exited; CPU time 267175.080681
04:43:14 (26328): called boinc_finish(0)

</stderr_txt>
]]>

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