Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:35:12 (18516): wrapper (7.7.26015): starting
16:35:12 (18516): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 16:35:12] Arguments: --nthreads 8
[2025-11-30 16:35:12] Threads: 8
[2025-11-30 16:35:12] Checking for CVMFS
[2025-11-30 16:35:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 16:35:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 16:35:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 16:35:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 16:35:12] 2.11.2.0 3869 109700 134352 153494 0 82 13354232 18432000 1885 130560 0 83395568 99.985 4112901 30554 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 16:35:12] CVMFS is ok
[2025-11-30 16:35:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 16:35:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 16:35:12] Further information can be found at the LHC@home message board.
[2025-11-30 16:35:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 16:35:12] Checking for apptainer binary...
[2025-11-30 16:35:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 16:35:12] Running /usr/bin/apptainer --version
[2025-11-30 16:35:12] apptainer version 1.3.2-1.el7
[2025-11-30 16:35:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 16:35:13] c-206-12.aglt2.org
[2025-11-30 16:35:13] apptainer works
[2025-11-30 16:35:13] Set ATHENA_PROC_NUMBER=8
[2025-11-30 16:35:13] Set ATHENA_CORE_NUMBER=8
[2025-11-30 16:35:13] Starting ATLAS job with PandaID=6900801356
[2025-11-30 16:35:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:47:33 (29118): wrapper (7.7.26015): starting
20:47:33 (29118): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 20:47:33] Arguments: --nthreads 8
[2025-11-30 20:47:33] Threads: 8
[2025-11-30 20:47:33] This job has been restarted, cleaning up previous attempt
[2025-11-30 20:47:33] Checking for CVMFS
[2025-11-30 20:47:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 20:47:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 20:47:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 20:47:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 20:47:33] 2.11.2.0 3869 109953 133640 153500 0 77 13406708 18432001 1 130560 0 83714634 99.985 4120911 30564 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 20:47:33] CVMFS is ok
[2025-11-30 20:47:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 20:47:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 20:47:33] Further information can be found at the LHC@home message board.
[2025-11-30 20:47:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 20:47:33] Checking for apptainer binary...
[2025-11-30 20:47:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 20:47:33] Running /usr/bin/apptainer --version
[2025-11-30 20:47:33] apptainer version 1.3.2-1.el7
[2025-11-30 20:47:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 20:47:35] c-206-12.aglt2.org
[2025-11-30 20:47:35] apptainer works
[2025-11-30 20:47:35] Set ATHENA_PROC_NUMBER=8
[2025-11-30 20:47:35] Set ATHENA_CORE_NUMBER=8
[2025-11-30 20:47:35] Starting ATLAS job with PandaID=6900801356
[2025-11-30 20:47:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 17:11:07]  *** The last 200 lines of the pilot log: ***
[2025-12-01 17:11:07] 2025-12-01 22:10:34,591 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 17:11:07] 2025-12-01 22:10:34,608 | INFO     | fitting pss+swap vs Time
[2025-12-01 17:11:07] 2025-12-01 22:10:34,609 | INFO     | sum of square deviations: 539849983984.6138
[2025-12-01 17:11:07] 2025-12-01 22:10:34,646 | INFO     | sum of deviations: 2243030627321.225
[2025-12-01 17:11:07] 2025-12-01 22:10:34,646 | INFO     | mean x: 1764590356.6733167
[2025-12-01 17:11:07] 2025-12-01 22:10:34,646 | INFO     | mean y: 3131895.2219451373
[2025-12-01 17:11:07] 2025-12-01 22:10:34,647 | INFO     | intersect: -7328590494.542434
[2025-12-01 17:11:07] 2025-12-01 22:10:34,648 | INFO     | chi2: 6.605249545929603
[2025-12-01 17:11:07] 2025-12-01 22:10:34,650 | INFO     | sum of square deviations: 533146840229.83624
[2025-12-01 17:11:07] 2025-12-01 22:10:34,700 | INFO     | sum of deviations: 2682388657764.017
[2025-12-01 17:11:07] 2025-12-01 22:10:34,700 | INFO     | mean x: 1764590204.176127
[2025-12-01 17:11:07] 2025-12-01 22:10:34,700 | INFO     | mean y: 3141888.189482471
[2025-12-01 17:11:07] 2025-12-01 22:10:34,700 | INFO     | intersect: -8874931453.186848
[2025-12-01 17:11:07] 2025-12-01 22:10:34,702 | INFO     | chi2: 3.475045977912017
[2025-12-01 17:11:07] 2025-12-01 22:10:34,702 | INFO     | current chi2=3.475045977912017 (change=47.38963374891009 %)
[2025-12-01 17:11:07] 2025-12-01 22:10:34,704 | INFO     | sum of square deviations: 526499418450.0419
[2025-12-01 17:11:07] 2025-12-01 22:10:34,754 | INFO     | sum of deviations: 2923406734076.28
[2025-12-01 17:11:07] 2025-12-01 22:10:34,754 | INFO     | mean x: 1764590051.6789606
[2025-12-01 17:11:07] 2025-12-01 22:10:34,754 | INFO     | mean y: 3147416.7761944677
[2025-12-01 17:11:07] 2025-12-01 22:10:34,754 | INFO     | intersect: -9794801563.203108
[2025-12-01 17:11:07] 2025-12-01 22:10:34,755 | INFO     | chi2: 2.4383666543702986
[2025-12-01 17:11:07] 2025-12-01 22:10:34,756 | INFO     | current chi2=2.4383666543702986 (change=29.83210380901514 %)
[2025-12-01 17:11:07] 2025-12-01 22:10:34,757 | INFO     | sum of square deviations: 519907486082.7272
[2025-12-01 17:11:07] 2025-12-01 22:10:34,783 | INFO     | sum of deviations: 2984023506710.185
[2025-12-01 17:11:07] 2025-12-01 22:10:34,783 | INFO     | mean x: 1764589899.1818182
[2025-12-01 17:11:07] 2025-12-01 22:10:34,783 | INFO     | mean y: 3148816.036195286
[2025-12-01 17:11:07] 2025-12-01 22:10:34,783 | INFO     | intersect: -10124764091.192163
[2025-12-01 17:11:07] 2025-12-01 22:10:34,784 | INFO     | chi2: 2.258323450999886
[2025-12-01 17:11:07] 2025-12-01 22:10:34,784 | INFO     | current chi2=2.258323450999886 (change=7.383762530041165 %)
[2025-12-01 17:11:07] 2025-12-01 22:10:34,784 | INFO     | right removable region: 1187
[2025-12-01 17:11:07] 2025-12-01 22:10:34,785 | INFO     | sum of square deviations: 533146346129.8365
[2025-12-01 17:11:07] 2025-12-01 22:10:34,828 | INFO     | sum of deviations: 1924495202831.6675
[2025-12-01 17:11:07] 2025-12-01 22:10:34,828 | INFO     | mean x: 1764590509.176127
[2025-12-01 17:11:07] 2025-12-01 22:10:34,828 | INFO     | mean y: 3139131.9115191987
[2025-12-01 17:11:07] 2025-12-01 22:10:34,828 | INFO     | intersect: -6366492760.951037
[2025-12-01 17:11:07] 2025-12-01 22:10:34,830 | INFO     | chi2: 4.623775377314504
[2025-12-01 17:11:07] 2025-12-01 22:10:34,830 | INFO     | current chi2=4.623775377314504 (change=29.998475528243375 %)
[2025-12-01 17:11:07] 2025-12-01 22:10:34,832 | INFO     | sum of square deviations: 526498503572.39935
[2025-12-01 17:11:07] 2025-12-01 22:10:34,867 | INFO     | sum of deviations: 1836161599126.3984
[2025-12-01 17:11:07] 2025-12-01 22:10:34,867 | INFO     | mean x: 1764590661.6781223
[2025-12-01 17:11:07] 2025-12-01 22:10:34,867 | INFO     | mean y: 3141157.9463537303
[2025-12-01 17:11:07] 2025-12-01 22:10:34,867 | INFO     | intersect: -6150862299.168629
[2025-12-01 17:11:07] 2025-12-01 22:10:34,868 | INFO     | chi2: 4.562211769905894
[2025-12-01 17:11:07] 2025-12-01 22:10:34,868 | INFO     | current chi2=4.562211769905894 (change=1.3314575727587863 %)
[2025-12-01 17:11:07] 2025-12-01 22:10:34,868 | INFO     | left removable region: 20
[2025-12-01 17:11:07] 2025-12-01 22:10:34,869 | INFO     | sum of square deviations: 492820737355.2134
[2025-12-01 17:11:07] 2025-12-01 22:10:34,897 | INFO     | sum of deviations: 2446002111411.687
[2025-12-01 17:11:07] 2025-12-01 22:10:34,898 | INFO     | mean x: 1764590478.6863754
[2025-12-01 17:11:07] 2025-12-01 22:10:34,898 | INFO     | mean y: 3161226.332476435
[2025-12-01 17:11:07] 2025-12-01 22:10:34,898 | INFO     | intersect: -8754976793.198196
[2025-12-01 17:11:07] 2025-12-01 22:10:34,900 | INFO     | chi2: 0.16709585094195795
[2025-12-01 17:11:07] 2025-12-01 22:10:34,900 | INFO     | current memory leak: 4.96 B/s (using 1167 data points, chi2=0.17)
[2025-12-01 17:11:07] 2025-12-01 22:10:34,902 | INFO     | could have reported an average CPU frequency of 2587 MHz (43 samples)
[2025-12-01 17:11:07] 2025-12-01 22:10:34,902 | INFO     | ..............................
[2025-12-01 17:11:07] 2025-12-01 22:10:34,902 | INFO     | . Timing measurements:
[2025-12-01 17:11:07] 2025-12-01 22:10:34,902 | INFO     | . get job = 0 s
[2025-12-01 17:11:07] 2025-12-01 22:10:34,902 | INFO     | . initial setup = 2 s
[2025-12-01 17:11:07] 2025-12-01 22:10:34,903 | INFO     | . payload setup = 7 s
[2025-12-01 17:11:07] 2025-12-01 22:10:34,903 | INFO     | . stage-in = 0 s
[2025-12-01 17:11:07] 2025-12-01 22:10:34,903 | INFO     | . payload execution = 73328 s
[2025-12-01 17:11:07] 2025-12-01 22:10:34,903 | INFO     | . stage-out = 4 s
[2025-12-01 17:11:07] 2025-12-01 22:10:34,903 | INFO     | . log creation = 0 s
[2025-12-01 17:11:07] 2025-12-01 22:10:34,903 | INFO     | ..............................
[2025-12-01 17:11:07] 2025-12-01 22:10:35,315 | INFO     | 
[2025-12-01 17:11:07] 2025-12-01 22:10:35,316 | INFO     | job summary report
[2025-12-01 17:11:07] 2025-12-01 22:10:35,316 | INFO     | --------------------------------------------------
[2025-12-01 17:11:07] 2025-12-01 22:10:35,316 | INFO     | PanDA job id: 6900801356
[2025-12-01 17:11:07] 2025-12-01 22:10:35,316 | INFO     | task id: 47556185
[2025-12-01 17:11:07] 2025-12-01 22:10:35,316 | INFO     | errors: (none)
[2025-12-01 17:11:07] 2025-12-01 22:10:35,317 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 17:11:07] 2025-12-01 22:10:35,317 | INFO     | pilot state: finished 
[2025-12-01 17:11:07] 2025-12-01 22:10:35,317 | INFO     | transexitcode: 0
[2025-12-01 17:11:07] 2025-12-01 22:10:35,317 | INFO     | exeerrorcode: 0
[2025-12-01 17:11:07] 2025-12-01 22:10:35,317 | INFO     | exeerrordiag: 
[2025-12-01 17:11:07] 2025-12-01 22:10:35,317 | INFO     | exitcode: 0
[2025-12-01 17:11:07] 2025-12-01 22:10:35,318 | INFO     | exitmsg: OK
[2025-12-01 17:11:07] 2025-12-01 22:10:35,318 | INFO     | cpuconsumptiontime: 564989 s
[2025-12-01 17:11:07] 2025-12-01 22:10:35,318 | INFO     | nevents: 1000
[2025-12-01 17:11:07] 2025-12-01 22:10:35,318 | INFO     | neventsw: 0
[2025-12-01 17:11:07] 2025-12-01 22:10:35,318 | INFO     | pid: 28226
[2025-12-01 17:11:07] 2025-12-01 22:10:35,318 | INFO     | pgrp: 28226
[2025-12-01 17:11:07] 2025-12-01 22:10:35,319 | INFO     | corecount: 8
[2025-12-01 17:11:07] 2025-12-01 22:10:35,319 | INFO     | event service: False
[2025-12-01 17:11:07] 2025-12-01 22:10:35,319 | INFO     | sizes: {0: 2284146, 1: 2284345, 5: 2284607, 11: 2284663, 73339: 2343277, 73344: 2352271, 73347: 2352455, 73351: 2352701}
[2025-12-01 17:11:07] 2025-12-01 22:10:35,319 | INFO     | --------------------------------------------------
[2025-12-01 17:11:07] 2025-12-01 22:10:35,319 | INFO     | 
[2025-12-01 17:11:07] 2025-12-01 22:10:35,320 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-01 17:11:07] 2025-12-01 22:10:35,407 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,408 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,408 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,408 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,409 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,409 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,409 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,409 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,411 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 17:11:07] 2025-12-01 22:10:35,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,411 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 17:11:07] 2025-12-01 22:10:35,412 | INFO     | job 6900801356 has completed (purged errors)
[2025-12-01 17:11:07] 2025-12-01 22:10:35,412 | INFO     | overall cleanup function is called
[2025-12-01 17:11:07] 2025-12-01 22:10:36,428 | INFO     | --- collectZombieJob: --- 10, [28226]
[2025-12-01 17:11:07] 2025-12-01 22:10:36,429 | INFO     | zombie collector waiting for pid 28226
[2025-12-01 17:11:07] 2025-12-01 22:10:36,429 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 17:11:07] 2025-12-01 22:10:36,429 | INFO     | collected zombie processes
[2025-12-01 17:11:07] 2025-12-01 22:10:36,429 | INFO     | will attempt to kill all subprocesses of pid=28226
[2025-12-01 17:11:07] 2025-12-01 22:10:36,625 | INFO     | process IDs to be killed: [28226] (in reverse order)
[2025-12-01 17:11:07] 2025-12-01 22:10:36,693 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 17:11:07] 2025-12-01 22:10:36,693 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 17:11:07] 2025-12-01 22:10:36,699 | INFO     | did not find any defunct processes belonging to 28226
[2025-12-01 17:11:07] 2025-12-01 22:10:36,704 | INFO     | did not find any defunct processes belonging to 28226
[2025-12-01 17:11:07] 2025-12-01 22:10:36,706 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 17:11:07] 2025-12-01 22:10:36,706 | INFO     | ready for new job
[2025-12-01 17:11:07] 2025-12-01 22:10:36,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 17:11:07] 2025-12-01 22:10:36,712 | INFO     | ***************************************
[2025-12-01 17:11:07] 2025-12-01 22:10:36,712 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 17:11:07] 2025-12-01 22:10:36,712 | INFO     | ***************************************
[2025-12-01 17:11:07] 2025-12-01 22:10:36,712 | INFO     | 
[2025-12-01 17:11:07] 2025-12-01 22:10:36,714 | INFO     | architecture information:
[2025-12-01 17:11:07] 2025-12-01 22:10:36,714 | INFO     | executing command: cat /etc/os-release
[2025-12-01 17:11:07] 2025-12-01 22:10:36,729 | INFO     | cat /etc/os-release:
[2025-12-01 17:11:07] NAME="CentOS Linux"
[2025-12-01 17:11:07] VERSION="7 (Core)"
[2025-12-01 17:11:07] ID="centos"
[2025-12-01 17:11:07] ID_LIKE="rhel fedora"
[2025-12-01 17:11:07] VERSION_ID="7"
[2025-12-01 17:11:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 17:11:07] ANSI_COLOR="0;31"
[2025-12-01 17:11:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 17:11:07] HOME_URL="https://www.centos.org/"
[2025-12-01 17:11:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 17:11:07] 
[2025-12-01 17:11:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 17:11:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 17:11:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 17:11:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 17:11:07] 
[2025-12-01 17:11:07] 2025-12-01 22:10:36,730 | INFO     | ***************************************
[2025-12-01 17:11:07] 2025-12-01 22:10:37,233 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-01 17:11:07] 2025-12-01 22:10:37,247 | INFO     | sufficient remaining disk space (26360152064 B)
[2025-12-01 17:11:07] 2025-12-01 22:10:37,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 17:11:07] 2025-12-01 22:10:37,248 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 17:11:07] 2025-12-01 22:10:37,248 | INFO     | update_server=False
[2025-12-01 17:11:07] 2025-12-01 22:10:37,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 17:11:07] 2025-12-01 22:10:37,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 17:11:07] 2025-12-01 22:10:37,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 17:11:07] 2025-12-01 22:10:37,249 | INFO     | aborting loop
[2025-12-01 17:11:07] 2025-12-01 22:10:37,996 | INFO     | all payload control threads have been joined
[2025-12-01 17:11:07] 2025-12-01 22:10:38,051 | INFO     | all data control threads have been joined
[2025-12-01 17:11:07] 2025-12-01 22:10:38,254 | INFO     | [job] retrieve thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:38,256 | INFO     | [job] job monitor thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:38,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 17:11:07] 2025-12-01 22:10:38,561 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:38,812 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:38,869 | INFO     | all job control threads have been joined
[2025-12-01 17:11:07] 2025-12-01 22:10:38,947 | INFO     | [job] validate thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:38,997 | INFO     | [payload] control thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:39,026 | INFO     | [data] copytool_in thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:39,056 | INFO     | [data] control thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:39,218 | INFO     | [payload] failed_post thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:39,734 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:39,734 | INFO     | [payload] validate_post thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:39,876 | INFO     | [job] control thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:40,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 17:11:07] 2025-12-01 22:10:40,467 | INFO     | [data] copytool_out thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:41,068 | INFO     | [job] queue monitor thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:41,257 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:48,165 | INFO     | job.realtimelogging is not enabled
[2025-12-01 17:11:07] 2025-12-01 22:10:48,624 | INFO     | [monitor] cgroup control has ended
[2025-12-01 17:11:07] 2025-12-01 22:10:49,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 17:11:07] 2025-12-01 22:10:50,298 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022802532160)>', '<ExcThread(monitor, started 140021705209600)>']
[2025-12-01 17:11:07] 2025-12-01 22:10:55,323 | INFO     | all workflow threads have been joined
[2025-12-01 17:11:07] 2025-12-01 22:10:55,323 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 17:11:07] 2025-12-01 22:10:55,324 | INFO     | traces error code: 0
[2025-12-01 17:11:07] 2025-12-01 22:10:55,324 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 17:11:07] 2025-12-01 22:11:07,173 | INFO     | PID=8355 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 17:11:07] 2025-12-01 22:11:07,174 | INFO     | .. there are 3 such processes running
[2025-12-01 17:11:07] 2025-12-01 22:11:07,174 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 17:11:07] 2025-12-01 22:11:07,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 17:11:07] 2025-12-01 22:11:07,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 17:11:07] 2025-12-01 22:11:07,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 17:11:07] 2025-12-01 22:11:07,174 | INFO     | [monitor] control thread has ended
[2025-12-01 17:11:07] 2025-12-01 22:11:07,291 [wrapper] ==== pilot stdout END ====
[2025-12-01 17:11:07] 2025-12-01 22:11:07,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 17:11:07] 2025-12-01 22:11:07,296 [wrapper] pilotpid: 8355
[2025-12-01 17:11:07] 2025-12-01 22:11:07,299 [wrapper] Pilot exit status: 0
[2025-12-01 17:11:07] 2025-12-01 22:11:07,307 [wrapper] pandaids: 6900801356 6900801356
[2025-12-01 17:11:07] 2025-12-01 22:11:07,349 [wrapper] cleanup supervisor_pilot 32736 8356
[2025-12-01 17:11:07] 2025-12-01 22:11:07,351 [wrapper] Test setup, not cleaning
[2025-12-01 17:11:07] 2025-12-01 22:11:07,354 [wrapper] apfmon messages muted
[2025-12-01 17:11:07] 2025-12-01 22:11:07,356 [wrapper] ==== wrapper stdout END ====
[2025-12-01 17:11:07] 2025-12-01 22:11:07,359 [wrapper] ==== wrapper stderr END ====
[2025-12-01 17:11:07]  *** Error codes and diagnostics ***
[2025-12-01 17:11:07]     "exeErrorCode": 0,
[2025-12-01 17:11:07]     "exeErrorDiag": "",
[2025-12-01 17:11:07]     "pilotErrorCode": 0,
[2025-12-01 17:11:07]     "pilotErrorDiag": "",
[2025-12-01 17:11:07]  *** Listing of results directory ***
[2025-12-01 17:11:07] total 1742224
[2025-12-01 17:11:07] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 27 19:59 queuedata.json
[2025-12-01 17:11:07] -rwx------ 1 boincer umatlas     36292 Nov 27 19:59 runpilot2-wrapper.sh
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas       100 Nov 30 16:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 17:11:07] -rwxr-xr-x 1 boincer umatlas      7986 Nov 30 16:35 run_atlas
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas       105 Nov 30 16:35 job.xml
[2025-12-01 17:11:07] -rw-r--r-- 3 boincer umatlas 412417644 Nov 30 16:35 EVNT.47483658._004457.pool.root.1
[2025-12-01 17:11:07] -rw-r--r-- 3 boincer umatlas 412417644 Nov 30 16:35 ATLAS.root_0
[2025-12-01 17:11:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 16:35 start_atlas.sh
[2025-12-01 17:11:07] drwxrwx--x 2 boincer umatlas      4096 Nov 30 16:35 shared
[2025-12-01 17:11:07] -rw-r--r-- 2 boincer umatlas    590109 Nov 30 16:35 input.tar.gz
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas         0 Nov 30 16:35 boinc_lockfile
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas      2788 Nov 30 20:47 pandaJob.out
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas        57 Nov 30 20:47 setup.sh.local
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas    993253 Nov 30 20:47 agis_schedconf.cvmfs.json
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas       533 Dec  1 16:55 boinc_task_state.xml
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas      5954 Dec  1 17:03 init_data.xml
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas 930269046 Dec  1 17:09 HITS.47556185._002205.pool.root.1
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas        96 Dec  1 17:10 pilot_heartbeat.json
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas      1066 Dec  1 17:10 memory_monitor_summary.json
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas   1516240 Dec  1 17:10 agis_ddmendpoints.agis.ALL.json
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas   2357842 Dec  1 17:10 log.47556185._002205.job.log.tgz.1
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas      8662 Dec  1 17:10 heartbeat.json
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas        29 Dec  1 17:10 wrapper_checkpoint.txt
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 17:10 boinc_mmap_file
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas       819 Dec  1 17:11 pilotlog.txt
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas  10149427 Dec  1 17:11 log.47556185._002205.job.log.1
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas       353 Dec  1 17:11 output.list
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas       620 Dec  1 17:11 runtime_log
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas  12523520 Dec  1 17:11 result.tar.gz
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas      9428 Dec  1 17:11 runtime_log.err
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas       793 Dec  1 17:11 1xBNDmm01i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRyKKDmWFfTDm.diag
[2025-12-01 17:11:07] -rw-r--r-- 1 boincer umatlas     23231 Dec  1 17:11 stderr.txt
[2025-12-01 17:11:07] HITS file was successfully produced:
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas 930269046 Dec  1 17:09 shared/HITS.pool.root.1
[2025-12-01 17:11:07]  *** Contents of shared directory: ***
[2025-12-01 17:11:07] total 1324056
[2025-12-01 17:11:07] -rw-r--r-- 3 boincer umatlas 412417644 Nov 30 16:35 ATLAS.root_0
[2025-12-01 17:11:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 16:35 start_atlas.sh
[2025-12-01 17:11:07] -rw-r--r-- 2 boincer umatlas    590109 Nov 30 16:35 input.tar.gz
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas 930269046 Dec  1 17:09 HITS.pool.root.1
[2025-12-01 17:11:07] -rw------- 1 boincer umatlas  12523520 Dec  1 17:11 result.tar.gz
17:11:08 (29118): run_atlas exited; CPU time 564058.296991
17:11:09 (29118): called boinc_finish(0)

</stderr_txt>
]]>

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