Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:02:33 (16372): wrapper (7.7.26015): starting
08:02:33 (16372): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 08:02:33] Arguments: --nthreads 8
[2025-12-01 08:02:33] Threads: 8
[2025-12-01 08:02:33] Checking for CVMFS
[2025-12-01 08:02:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 08:02:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 08:02:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 08:02:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 08:02:35] 2.11.2.0 19741 292070 139868 153508 2 72 14639080 25165824 2554 130560 12 165456331 99.890 83577097 2686 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 08:02:35] CVMFS is ok
[2025-12-01 08:02:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 08:02:35] Checking for apptainer binary...
[2025-12-01 08:02:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 08:02:35] Running /usr/bin/apptainer --version
[2025-12-01 08:02:35] apptainer version 1.3.2-1.el7
[2025-12-01 08:02:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 08:02:40] cg-vwn339.simple-grid.lan
[2025-12-01 08:02:40] apptainer works
[2025-12-01 08:02:41] Set ATHENA_PROC_NUMBER=8
[2025-12-01 08:02:41] Set ATHENA_CORE_NUMBER=8
[2025-12-01 08:02:41] Starting ATLAS job with PandaID=6897995297
[2025-12-01 08:02:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/35 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:03:57]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:03:57] 2025-12-02 03:02:44,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:03:57] 2025-12-02 03:02:45,955 | INFO     | time since job start (71764s) is within the limit (172800.0s)
[2025-12-02 04:03:57] 2025-12-02 03:02:47,400 | INFO     | monitor loop #4836: job 0:6897995297 is in state 'finished'
[2025-12-02 04:03:57] 2025-12-02 03:02:47,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:03:57] 2025-12-02 03:02:47,963 | INFO     | time since job start (71766s) is within the limit (172800.0s)
[2025-12-02 04:03:57] 2025-12-02 03:02:49,908 | INFO     | monitor loop #4837: job 0:6897995297 is in state 'finished'
[2025-12-02 04:03:57] 2025-12-02 03:02:49,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:03:57] 2025-12-02 03:02:49,969 | INFO     | time since job start (71768s) is within the limit (172800.0s)
[2025-12-02 04:03:57] 2025-12-02 03:02:51,976 | INFO     | time since job start (71770s) is within the limit (172800.0s)
[2025-12-02 04:03:57] 2025-12-02 03:02:52,413 | INFO     | monitor loop #4838: job 0:6897995297 is in state 'finished'
[2025-12-02 04:03:57] 2025-12-02 03:02:52,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:03:57] 2025-12-02 03:02:53,983 | INFO     | time since job start (71772s) is within the limit (172800.0s)
[2025-12-02 04:03:57] 2025-12-02 03:02:54,918 | INFO     | monitor loop #4839: job 0:6897995297 is in state 'finished'
[2025-12-02 04:03:57] 2025-12-02 03:02:54,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:03:57] 2025-12-02 03:02:54,970 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 04:03:57] 2025-12-02 03:02:54,971 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 04:03:57] 2025-12-02 03:02:54,973 | INFO     | using path: /var/lib/boinc/slots/35/PanDA_Pilot-6897995297/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:03:57] 2025-12-02 03:02:54,974 | INFO     | extracted standard info from prmon json
[2025-12-02 04:03:57] 2025-12-02 03:02:54,974 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:03:57] 2025-12-02 03:02:54,974 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:03:57] 2025-12-02 03:02:55,042 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:03:57] 2025-12-02 03:02:55,044 | INFO     | sum of square deviations: 490294138812.76746
[2025-12-02 04:03:57] 2025-12-02 03:02:55,094 | INFO     | sum of deviations: 3433642352725.865
[2025-12-02 04:03:57] 2025-12-02 03:02:55,095 | INFO     | mean x: 1764608929.0437768
[2025-12-02 04:03:57] 2025-12-02 03:02:55,095 | INFO     | mean y: 3330219.6300429185
[2025-12-02 04:03:57] 2025-12-02 03:02:55,095 | INFO     | intersect: -12354631002.249372
[2025-12-02 04:03:57] 2025-12-02 03:02:55,097 | INFO     | chi2: 22.499744006222283
[2025-12-02 04:03:57] 2025-12-02 03:02:55,098 | INFO     | sum of square deviations: 484008773227.29694
[2025-12-02 04:03:57] 2025-12-02 03:02:55,134 | INFO     | sum of deviations: 3905525628621.0273
[2025-12-02 04:03:57] 2025-12-02 03:02:55,135 | INFO     | mean x: 1764608776.548276
[2025-12-02 04:03:57] 2025-12-02 03:02:55,135 | INFO     | mean y: 3341670.2672413792
[2025-12-02 04:03:57] 2025-12-02 03:02:55,135 | INFO     | intersect: -14235501058.441814
[2025-12-02 04:03:57] 2025-12-02 03:02:55,136 | INFO     | chi2: 19.18936362676461
[2025-12-02 04:03:57] 2025-12-02 03:02:55,137 | INFO     | current chi2=19.18936362676461 (change=14.712969083302415 %)
[2025-12-02 04:03:57] 2025-12-02 03:02:55,137 | INFO     | right removable region: 1159
[2025-12-02 04:03:57] 2025-12-02 03:02:55,138 | INFO     | sum of square deviations: 484008031467.2968
[2025-12-02 04:03:57] 2025-12-02 03:02:55,196 | INFO     | sum of deviations: 2842849093575.4395
[2025-12-02 04:03:57] 2025-12-02 03:02:55,196 | INFO     | mean x: 1764609081.548276
[2025-12-02 04:03:57] 2025-12-02 03:02:55,196 | INFO     | mean y: 3344552.643965517
[2025-12-02 04:03:57] 2025-12-02 03:02:55,196 | INFO     | intersect: -10361188682.035341
[2025-12-02 04:03:57] 2025-12-02 03:02:55,198 | INFO     | chi2: 17.271898135348636
[2025-12-02 04:03:57] 2025-12-02 03:02:55,198 | INFO     | current chi2=17.271898135348636 (change=23.2351348949921 %)
[2025-12-02 04:03:57] 2025-12-02 03:02:55,198 | INFO     | left removable region: 10
[2025-12-02 04:03:57] 2025-12-02 03:02:55,200 | INFO     | sum of square deviations: 470369077811.08813
[2025-12-02 04:03:57] 2025-12-02 03:02:55,242 | INFO     | sum of deviations: 2879157664220.675
[2025-12-02 04:03:57] 2025-12-02 03:02:55,242 | INFO     | mean x: 1764609051.0583115
[2025-12-02 04:03:57] 2025-12-02 03:02:55,242 | INFO     | mean y: 3372507.243690165
[2025-12-02 04:03:57] 2025-12-02 03:02:55,242 | INFO     | intersect: -10797906559.294352
[2025-12-02 04:03:57] 2025-12-02 03:02:55,244 | INFO     | chi2: 8.544728168255524
[2025-12-02 04:03:57] 2025-12-02 03:02:55,244 | INFO     | current memory leak: 6.12 B/s (using 1149 data points, chi2=8.54)
[2025-12-02 04:03:57] 2025-12-02 03:02:55,245 | INFO     | could have reported an average CPU frequency of 1999 MHz (40 samples)
[2025-12-02 04:03:57] 2025-12-02 03:02:55,245 | INFO     | ..............................
[2025-12-02 04:03:57] 2025-12-02 03:02:55,245 | INFO     | . Timing measurements:
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | . get job = 0 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | . initial setup = 11 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | . payload setup = 266 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | . stage-in = 0 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | . payload execution = 71203 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | . stage-out = 4 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | . log creation = 1 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,246 | INFO     | ..............................
[2025-12-02 04:03:57] 2025-12-02 03:02:55,485 | INFO     | 
[2025-12-02 04:03:57] 2025-12-02 03:02:55,485 | INFO     | job summary report
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | --------------------------------------------------
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | PanDA job id: 6897995297
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | task id: 47531111
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | errors: (none)
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | pilot state: finished 
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | transexitcode: 0
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | exeerrorcode: 0
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | exeerrordiag: 
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | exitcode: 0
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | exitmsg: OK
[2025-12-02 04:03:57] 2025-12-02 03:02:55,486 | INFO     | cpuconsumptiontime: 266381 s
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | nevents: 1000
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | neventsw: 0
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | pid: 27520
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | pgrp: 27520
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | corecount: 8
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | event service: False
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | sizes: {0: 2284280, 1: 2284308, 2: 2284479, 12: 2284507, 23: 2284535, 34: 2284563, 44: 2284719, 55: 2284747, 66: 2284775, 77: 2284803, 87: 2284859, 98: 2285167, 10
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | --------------------------------------------------
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | 
[2025-12-02 04:03:57] 2025-12-02 03:02:55,487 | INFO     | executing command: ls -lF /var/lib/boinc/slots/35
[2025-12-02 04:03:57] 2025-12-02 03:02:55,504 | INFO     | PID=20227 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 04:03:57] 2025-12-02 03:02:55,504 | INFO     | .. there are 9 such processes running
[2025-12-02 04:03:57] 2025-12-02 03:02:55,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | job 6897995297 has completed (purged errors)
[2025-12-02 04:03:57] 2025-12-02 03:02:55,804 | INFO     | overall cleanup function is called
[2025-12-02 04:03:57] 2025-12-02 03:02:56,822 | INFO     | --- collectZombieJob: --- 10, [27520]
[2025-12-02 04:03:57] 2025-12-02 03:02:56,822 | INFO     | zombie collector waiting for pid 27520
[2025-12-02 04:03:57] 2025-12-02 03:02:56,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:03:57] 2025-12-02 03:02:56,822 | INFO     | collected zombie processes
[2025-12-02 04:03:57] 2025-12-02 03:02:56,822 | INFO     | will attempt to kill all subprocesses of pid=27520
[2025-12-02 04:03:57] 2025-12-02 03:02:56,950 | INFO     | process IDs to be killed: [27520] (in reverse order)
[2025-12-02 04:03:57] 2025-12-02 03:02:57,866 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:03:57] 2025-12-02 03:02:57,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:03:57] 2025-12-02 03:02:57,870 | INFO     | did not find any defunct processes belonging to 27520
[2025-12-02 04:03:57] 2025-12-02 03:02:57,873 | INFO     | did not find any defunct processes belonging to 27520
[2025-12-02 04:03:57] 2025-12-02 03:02:57,924 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:03:57] 2025-12-02 03:02:57,924 | INFO     | ready for new job
[2025-12-02 04:03:57] 2025-12-02 03:02:57,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:03:57] 2025-12-02 03:02:57,929 | INFO     | ***************************************
[2025-12-02 04:03:57] 2025-12-02 03:02:57,929 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:03:57] 2025-12-02 03:02:57,930 | INFO     | ***************************************
[2025-12-02 04:03:57] 2025-12-02 03:02:57,930 | INFO     | 
[2025-12-02 04:03:57] 2025-12-02 03:02:57,930 | INFO     | pilot is running in a VM
[2025-12-02 04:03:57] 2025-12-02 03:02:57,930 | INFO     | architecture information:
[2025-12-02 04:03:57] 2025-12-02 03:02:57,937 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:03:57] 2025-12-02 03:02:58,102 | INFO     | cat /etc/os-release:
[2025-12-02 04:03:57] NAME="CentOS Linux"
[2025-12-02 04:03:57] VERSION="7 (Core)"
[2025-12-02 04:03:57] ID="centos"
[2025-12-02 04:03:57] ID_LIKE="rhel fedora"
[2025-12-02 04:03:57] VERSION_ID="7"
[2025-12-02 04:03:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:03:57] ANSI_COLOR="0;31"
[2025-12-02 04:03:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:03:57] HOME_URL="https://www.centos.org/"
[2025-12-02 04:03:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:03:57] 
[2025-12-02 04:03:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:03:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:03:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:03:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:03:57] 
[2025-12-02 04:03:57] 2025-12-02 03:02:58,103 | INFO     | ***************************************
[2025-12-02 04:03:57] 2025-12-02 03:02:58,606 | INFO     | executing command: df -mP /var/lib/boinc/slots/35
[2025-12-02 04:03:57] 2025-12-02 03:02:58,767 | INFO     | sufficient remaining disk space (488799993856 B)
[2025-12-02 04:03:57] 2025-12-02 03:02:58,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:03:57] 2025-12-02 03:02:58,767 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:03:57] 2025-12-02 03:02:58,767 | INFO     | update_server=False
[2025-12-02 04:03:57] 2025-12-02 03:02:58,767 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:03:57] 2025-12-02 03:02:58,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:03:57] 2025-12-02 03:02:58,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:03:57] 2025-12-02 03:02:58,774 | INFO     | aborting loop
[2025-12-02 04:03:57] 2025-12-02 03:02:59,120 | INFO     | all job control threads have been joined
[2025-12-02 04:03:57] 2025-12-02 03:02:59,554 | INFO     | all data control threads have been joined
[2025-12-02 04:03:57] 2025-12-02 03:02:59,773 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:02:59,780 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:02:59,815 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:02:59,874 | INFO     | all payload control threads have been joined
[2025-12-02 04:03:57] 2025-12-02 03:03:00,003 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,073 | INFO     | [job] validate thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,126 | INFO     | [job] control thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,141 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,244 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,465 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,471 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:03:57] 2025-12-02 03:03:00,560 | INFO     | [data] control thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,775 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:00,880 | INFO     | [payload] control thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:01,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:03:57] 2025-12-02 03:03:01,184 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:01,505 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:05,135 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:03:57] 2025-12-02 03:03:27,691 | INFO     | PID=20227 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 04:03:57] 2025-12-02 03:03:27,691 | INFO     | .. there are 9 such processes running
[2025-12-02 04:03:57] 2025-12-02 03:03:27,692 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:03:57] 2025-12-02 03:03:27,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:03:57] 2025-12-02 03:03:27,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:03:57] 2025-12-02 03:03:45,717 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:03:57] 2025-12-02 03:03:47,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741524952896)>', '<ExcThread(monitor, started 139741206910720)>']
[2025-12-02 04:03:57] 2025-12-02 03:03:47,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:03:57] 2025-12-02 03:03:47,810 | INFO     | [monitor] control thread has ended
[2025-12-02 04:03:57] 2025-12-02 03:03:52,349 | INFO     | all workflow threads have been joined
[2025-12-02 04:03:57] 2025-12-02 03:03:52,349 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:03:57] 2025-12-02 03:03:52,349 | INFO     | traces error code: 0
[2025-12-02 04:03:57] 2025-12-02 03:03:52,350 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:03:57] 2025-12-02 03:03:52,621 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:03:57] 2025-12-02 03:03:52,704 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:03:57] 2025-12-02 03:03:52,748 [wrapper] pilotpid: 20227
[2025-12-02 04:03:57] 2025-12-02 03:03:52,757 [wrapper] Pilot exit status: 0
[2025-12-02 04:03:57] 2025-12-02 03:03:53,150 [wrapper] pandaids: 6897995297
[2025-12-02 04:03:57] 2025-12-02 03:03:54,141 [wrapper] cleanup supervisor_pilot 28129 20228
[2025-12-02 04:03:57] 2025-12-02 03:03:54,225 [wrapper] Test setup, not cleaning
[2025-12-02 04:03:57] 2025-12-02 03:03:54,280 [wrapper] apfmon messages muted
[2025-12-02 04:03:57] 2025-12-02 03:03:54,369 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:03:57] 2025-12-02 03:03:54,461 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:03:57]  *** Error codes and diagnostics ***
[2025-12-02 04:03:57]     "exeErrorCode": 0,
[2025-12-02 04:03:57]     "exeErrorDiag": "",
[2025-12-02 04:03:57]     "pilotErrorCode": 0,
[2025-12-02 04:03:57]     "pilotErrorDiag": "",
[2025-12-02 04:03:57]  *** Listing of results directory ***
[2025-12-02 04:03:57] total 1071144
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc      5112 Nov 28 23:41 queuedata.json
[2025-12-02 04:03:57] -rwx------. 1 boinc boinc     36292 Nov 28 23:42 runpilot2-wrapper.sh
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc       100 Dec  1 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:03:57] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 08:02 run_atlas
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc       105 Dec  1 08:02 job.xml
[2025-12-02 04:03:57] -rw-r--r--. 2 boinc boinc 377686108 Dec  1 08:02 EVNT.47531104._000043.pool.root.1
[2025-12-02 04:03:57] -rw-r--r--. 2 boinc boinc    590119 Dec  1 08:02 input.tar.gz
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc      6383 Dec  1 08:02 init_data.xml
[2025-12-02 04:03:57] -rw-r--r--. 2 boinc boinc     15847 Dec  1 08:02 start_atlas.sh
[2025-12-02 04:03:57] drwxrwx--x. 2 boinc boinc        68 Dec  1 08:02 shared
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc         0 Dec  1 08:02 boinc_lockfile
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc      2879 Dec  1 08:02 pandaJob.out
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc    992513 Dec  1 08:06 agis_schedconf.cvmfs.json
[2025-12-02 04:03:57] drwx------. 5 boinc boinc      4096 Dec  1 08:06 pilot3
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc       533 Dec  2 03:47 boinc_task_state.xml
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc 691326666 Dec  2 04:00 HITS.47531111._000376.pool.root.1
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc      1027 Dec  2 04:01 memory_monitor_summary.json
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc   1516240 Dec  2 04:01 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc   2399419 Dec  2 04:01 log.47531111._000376.job.log.tgz.1
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc     27212 Dec  2 04:02 heartbeat.json
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc        95 Dec  2 04:03 pilot_heartbeat.json
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc      4885 Dec  2 04:03 pilotlog.txt
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc        29 Dec  2 04:03 wrapper_checkpoint.txt
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc      8192 Dec  2 04:03 boinc_mmap_file
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc   9548648 Dec  2 04:03 log.47531111._000376.job.log.1
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc       353 Dec  2 04:03 output.list
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc       620 Dec  2 04:03 runtime_log
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc  11991040 Dec  2 04:03 result.tar.gz
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc      8833 Dec  2 04:03 runtime_log.err
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc       661 Dec  2 04:03 JrxLDmILMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaQLKDmM9uQJn.diag
[2025-12-02 04:03:57] -rw-r--r--. 1 boinc boinc     21529 Dec  2 04:03 stderr.txt
[2025-12-02 04:03:57] HITS file was successfully produced:
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc 691326666 Dec  2 04:00 shared/HITS.pool.root.1
[2025-12-02 04:03:57]  *** Contents of shared directory: ***
[2025-12-02 04:03:57] total 1056268
[2025-12-02 04:03:57] -rw-r--r--. 2 boinc boinc 377686108 Dec  1 08:02 ATLAS.root_0
[2025-12-02 04:03:57] -rw-r--r--. 2 boinc boinc    590119 Dec  1 08:02 input.tar.gz
[2025-12-02 04:03:57] -rw-r--r--. 2 boinc boinc     15847 Dec  1 08:02 start_atlas.sh
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc 691326666 Dec  2 04:00 HITS.pool.root.1
[2025-12-02 04:03:57] -rw-------. 1 boinc boinc  11991040 Dec  2 04:03 result.tar.gz
04:03:58 (16372): run_atlas exited; CPU time 266782.927091
04:03:58 (16372): called boinc_finish(0)

</stderr_txt>
]]>

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