Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:52:56 (7151): wrapper (7.7.26015): starting
01:52:56 (7151): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 01:52:56] Arguments: --nthreads 8
[2025-12-01 01:52:56] Threads: 8
[2025-12-01 01:52:56] Checking for CVMFS
[2025-12-01 01:52:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 01:52:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 01:52:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 01:52:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 01:52:56] 2.11.0.0 23259 9619 77116 153499 3 110 2123331 4096001 4577 130560 0 1304137 99.366 1022992 700 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 01:52:56] CVMFS is ok
[2025-12-01 01:52:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 01:52:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 01:52:56] Further information can be found at the LHC@home message board.
[2025-12-01 01:52:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 01:52:56] Checking for apptainer binary...
[2025-12-01 01:52:56] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 01:52:56] apptainer is not installed, using version from CVMFS
[2025-12-01 01:52:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 01:52:57] WARNING: Environment variable TMPDIR already has value [/tmp/job_10937881/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node181
[2025-12-01 01:52:57] apptainer works
[2025-12-01 01:52:57] Set ATHENA_PROC_NUMBER=8
[2025-12-01 01:52:57] Set ATHENA_CORE_NUMBER=8
[2025-12-01 01:52:57] Starting ATLAS job with PandaID=6894268529
[2025-12-01 01:52:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10937881/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 06:15:33]  *** The last 200 lines of the pilot log: ***
[2025-12-01 06:15:33] 2025-12-01 05:14:45,190 | INFO     | monitor loop #1146: job 0:6894268529 is in state 'finished'
[2025-12-01 06:15:33] 2025-12-01 05:14:45,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,493 | INFO     | time since job start (15704s) is within the limit (172800.0s)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,735 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 06:15:33] 2025-12-01 05:14:45,752 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3011.5432656250005
[2025-12-01 06:15:33] 2025-12-01 05:14:45,758 | INFO     | using path: /tmp/job_10937881/atlas/pilot/slots/0/PanDA_Pilot-6894268529/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,758 | INFO     | extracted standard info from prmon json
[2025-12-01 06:15:33] 2025-12-01 05:14:45,758 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 06:15:33] 2025-12-01 05:14:45,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 06:15:33] 2025-12-01 05:14:45,761 | INFO     | fitting pss+swap vs Time
[2025-12-01 06:15:33] 2025-12-01 05:14:45,761 | INFO     | sum of square deviations: 5263458688.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,762 | INFO     | sum of deviations: 115590158917.99998
[2025-12-01 06:15:33] 2025-12-01 05:14:45,762 | INFO     | mean x: 1764558207.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,762 | INFO     | mean y: 2884547.941634241
[2025-12-01 06:15:33] 2025-12-01 05:14:45,762 | INFO     | intersect: -38748357868.419685
[2025-12-01 06:15:33] 2025-12-01 05:14:45,762 | INFO     | chi2: 2.532047871533105
[2025-12-01 06:15:33] 2025-12-01 05:14:45,762 | INFO     | sum of square deviations: 4962187923.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,763 | INFO     | sum of deviations: 154011191582.5
[2025-12-01 06:15:33] 2025-12-01 05:14:45,763 | INFO     | mean x: 1764558054.5
[2025-12-01 06:15:33] 2025-12-01 05:14:45,763 | INFO     | mean y: 2903824.162698413
[2025-12-01 06:15:33] 2025-12-01 05:14:45,763 | INFO     | intersect: -54763600952.97671
[2025-12-01 06:15:33] 2025-12-01 05:14:45,763 | INFO     | chi2: 1.458664063155161
[2025-12-01 06:15:33] 2025-12-01 05:14:45,763 | INFO     | current chi2=1.458664063155161 (change=42.39192396184956 %)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,764 | INFO     | sum of square deviations: 4672638308.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,764 | INFO     | sum of deviations: 148496838949.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,764 | INFO     | mean x: 1764557902.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,764 | INFO     | mean y: 2900920.2591093117
[2025-12-01 06:15:33] 2025-12-01 05:14:45,765 | INFO     | intersect: -56074897813.02973
[2025-12-01 06:15:33] 2025-12-01 05:14:45,765 | INFO     | chi2: 1.456582322444595
[2025-12-01 06:15:33] 2025-12-01 05:14:45,765 | INFO     | current chi2=1.456582322444595 (change=0.14271556852254846 %)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,765 | INFO     | right removable region: 246
[2025-12-01 06:15:33] 2025-12-01 05:14:45,765 | INFO     | sum of square deviations: 4962187923.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,766 | INFO     | sum of deviations: 67201544077.000046
[2025-12-01 06:15:33] 2025-12-01 05:14:45,766 | INFO     | mean x: 1764558359.5
[2025-12-01 06:15:33] 2025-12-01 05:14:45,766 | INFO     | mean y: 2908852.8571428573
[2025-12-01 06:15:33] 2025-12-01 05:14:45,766 | INFO     | intersect: -23894018916.19183
[2025-12-01 06:15:33] 2025-12-01 05:14:45,766 | INFO     | chi2: 1.1302499417719334
[2025-12-01 06:15:33] 2025-12-01 05:14:45,766 | INFO     | current chi2=1.1302499417719334 (change=55.362220656294724 %)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,766 | INFO     | sum of square deviations: 4672638308.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,767 | INFO     | sum of deviations: 55487976986.999985
[2025-12-01 06:15:33] 2025-12-01 05:14:45,767 | INFO     | mean x: 1764558512.0
[2025-12-01 06:15:33] 2025-12-01 05:14:45,767 | INFO     | mean y: 2915015.5222672066
[2025-12-01 06:15:33] 2025-12-01 05:14:45,767 | INFO     | intersect: -20951367266.167862
[2025-12-01 06:15:33] 2025-12-01 05:14:45,767 | INFO     | chi2: 1.107913225932764
[2025-12-01 06:15:33] 2025-12-01 05:14:45,768 | INFO     | current chi2=1.107913225932764 (change=1.9762633921618553 %)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,768 | INFO     | left removable region: 20
[2025-12-01 06:15:33] 2025-12-01 05:14:45,768 | INFO     | sum of square deviations: 3579276412.5
[2025-12-01 06:15:33] 2025-12-01 05:14:45,768 | INFO     | sum of deviations: 71319303540.49998
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | mean x: 1764558481.5
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | mean y: 2943524.6858407077
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | intersect: -35156979167.387665
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | chi2: 0.015137648537083362
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | current memory leak: 19.93 B/s (using 226 data points, chi2=0.02)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | could have reported an average CPU frequency of 3077 MHz (12 samples)
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | ..............................
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . Timing measurements:
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . get job = 0 s
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . initial setup = 1 s
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . payload setup = 2 s
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . stage-in = 0 s
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . payload execution = 15677 s
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . stage-out = 1 s
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | . log creation = 0 s
[2025-12-01 06:15:33] 2025-12-01 05:14:45,769 | INFO     | ..............................
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | 
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | job summary report
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | --------------------------------------------------
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | PanDA job id: 6894268529
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | task id: 47533967
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | errors: (none)
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | pilot state: finished 
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | transexitcode: 0
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | exeerrorcode: 0
[2025-12-01 06:15:33] 2025-12-01 05:14:46,054 | INFO     | exeerrordiag: 
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | exitcode: 0
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | exitmsg: OK
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | cpuconsumptiontime: 118664 s
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | nevents: 1000
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | neventsw: 0
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | pid: 20055
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | pgrp: 20055
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | corecount: 8
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | event service: False
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | sizes: {0: 2284441, 1: 2284441, 2: 2284731, 11: 2284759, 15683: 2317036, 15685: 2326060, 15687: 2326244, 15691: 2326490}
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | --------------------------------------------------
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | 
[2025-12-01 06:15:33] 2025-12-01 05:14:46,055 | INFO     | executing command: ls -lF /tmp/job_10937881/atlas/pilot/slots/0
[2025-12-01 06:15:33] 2025-12-01 05:14:46,063 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,063 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,063 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,063 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | job 6894268529 has completed (purged errors)
[2025-12-01 06:15:33] 2025-12-01 05:14:46,064 | INFO     | overall cleanup function is called
[2025-12-01 06:15:33] 2025-12-01 05:14:47,071 | INFO     | --- collectZombieJob: --- 10, [20055]
[2025-12-01 06:15:33] 2025-12-01 05:14:47,071 | INFO     | zombie collector waiting for pid 20055
[2025-12-01 06:15:33] 2025-12-01 05:14:47,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 06:15:33] 2025-12-01 05:14:47,071 | INFO     | collected zombie processes
[2025-12-01 06:15:33] 2025-12-01 05:14:47,071 | INFO     | will attempt to kill all subprocesses of pid=20055
[2025-12-01 06:15:33] 2025-12-01 05:14:47,187 | INFO     | process IDs to be killed: [20055] (in reverse order)
[2025-12-01 06:15:33] 2025-12-01 05:14:47,227 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 06:15:33] 2025-12-01 05:14:47,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 06:15:33] 2025-12-01 05:14:47,231 | INFO     | did not find any defunct processes belonging to 20055
[2025-12-01 06:15:33] 2025-12-01 05:14:47,235 | INFO     | did not find any defunct processes belonging to 20055
[2025-12-01 06:15:33] 2025-12-01 05:14:47,235 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 06:15:33] 2025-12-01 05:14:47,235 | INFO     | ready for new job
[2025-12-01 06:15:33] 2025-12-01 05:14:47,235 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 06:15:33] 2025-12-01 05:14:47,236 | INFO     | ***************************************
[2025-12-01 06:15:33] 2025-12-01 05:14:47,236 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 06:15:33] 2025-12-01 05:14:47,236 | INFO     | ***************************************
[2025-12-01 06:15:33] 2025-12-01 05:14:47,236 | INFO     | 
[2025-12-01 06:15:33] 2025-12-01 05:14:47,250 | INFO     | architecture information:
[2025-12-01 06:15:33] 2025-12-01 05:14:47,250 | INFO     | executing command: cat /etc/os-release
[2025-12-01 06:15:33] 2025-12-01 05:14:47,257 | INFO     | cat /etc/os-release:
[2025-12-01 06:15:33] NAME="CentOS Linux"
[2025-12-01 06:15:33] VERSION="7 (Core)"
[2025-12-01 06:15:33] ID="centos"
[2025-12-01 06:15:33] ID_LIKE="rhel fedora"
[2025-12-01 06:15:33] VERSION_ID="7"
[2025-12-01 06:15:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 06:15:33] ANSI_COLOR="0;31"
[2025-12-01 06:15:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 06:15:33] HOME_URL="https://www.centos.org/"
[2025-12-01 06:15:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 06:15:33] 
[2025-12-01 06:15:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 06:15:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 06:15:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 06:15:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 06:15:33] 
[2025-12-01 06:15:33] 2025-12-01 05:14:47,257 | INFO     | ***************************************
[2025-12-01 06:15:33] 2025-12-01 05:14:47,760 | INFO     | executing command: df -mP /tmp/job_10937881/atlas/pilot/slots/0
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | INFO     | sufficient remaining disk space (217390776320 B)
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | INFO     | update_server=False
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 06:15:33] 2025-12-01 05:14:47,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 06:15:33] 2025-12-01 05:14:47,932 | INFO     | all data control threads have been joined
[2025-12-01 06:15:33] 2025-12-01 05:14:48,066 | INFO     | all payload control threads have been joined
[2025-12-01 06:15:33] 2025-12-01 05:14:48,604 | INFO     | all job control threads have been joined
[2025-12-01 06:15:33] 2025-12-01 05:14:48,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 06:15:33] 2025-12-01 05:14:48,698 | INFO     | aborting loop
[2025-12-01 06:15:33] 2025-12-01 05:14:48,772 | INFO     | [job] retrieve thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:48,772 | INFO     | [job] queue monitor thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:48,937 | INFO     | [data] control thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,071 | INFO     | [payload] control thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,145 | INFO     | [payload] failed_post thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,289 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,376 | INFO     | [job] validate thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,425 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,609 | INFO     | [job] control thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,614 | INFO     | [data] copytool_in thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,630 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,703 | INFO     | [job] job monitor thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:49,772 | INFO     | [data] copytool_out thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:50,028 | INFO     | [payload] validate_post thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:14:51,773 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 06:15:33] 2025-12-01 05:15:18,699 | INFO     | PID=11835 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 06:15:33] 2025-12-01 05:15:18,699 | INFO     | .. there are 7 such processes running
[2025-12-01 06:15:33] 2025-12-01 05:15:18,700 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 06:15:33] 2025-12-01 05:15:18,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 06:15:33] 2025-12-01 05:15:18,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 06:15:33] 2025-12-01 05:15:27,732 | INFO     | [monitor] cgroup control has ended
[2025-12-01 06:15:33] 2025-12-01 05:15:28,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-01 06:15:33] 2025-12-01 05:15:28,750 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 06:15:33] 2025-12-01 05:15:28,750 | INFO     | [monitor] control thread has ended
[2025-12-01 06:15:33] 2025-12-01 05:15:33,209 | INFO     | all workflow threads have been joined
[2025-12-01 06:15:33] 2025-12-01 05:15:33,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 06:15:33] 2025-12-01 05:15:33,210 | INFO     | traces error code: 0
[2025-12-01 06:15:33] 2025-12-01 05:15:33,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 06:15:33] 2025-12-01 05:15:33,262 [wrapper] ==== pilot stdout END ====
[2025-12-01 06:15:33] 2025-12-01 05:15:33,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 06:15:33] 2025-12-01 05:15:33,265 [wrapper] pilotpid: 11835
[2025-12-01 06:15:33] 2025-12-01 05:15:33,266 [wrapper] Pilot exit status: 0
[2025-12-01 06:15:33] 2025-12-01 05:15:33,270 [wrapper] pandaids: 6894268529
[2025-12-01 06:15:33] 2025-12-01 05:15:33,296 [wrapper] cleanup supervisor_pilot 22739 11836
[2025-12-01 06:15:33] 2025-12-01 05:15:33,297 [wrapper] Test setup, not cleaning
[2025-12-01 06:15:33] 2025-12-01 05:15:33,298 [wrapper] apfmon messages muted
[2025-12-01 06:15:33] 2025-12-01 05:15:33,299 [wrapper] ==== wrapper stdout END ====
[2025-12-01 06:15:33] 2025-12-01 05:15:33,300 [wrapper] ==== wrapper stderr END ====
[2025-12-01 06:15:33]  *** Error codes and diagnostics ***
[2025-12-01 06:15:33]     "exeErrorCode": 0,
[2025-12-01 06:15:33]     "exeErrorDiag": "",
[2025-12-01 06:15:33]     "pilotErrorCode": 0,
[2025-12-01 06:15:33]     "pilotErrorDiag": "",
[2025-12-01 06:15:33]  *** Listing of results directory ***
[2025-12-01 06:15:33] total 1295044
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user    576529 Nov 21 06:09 pilot3.tar.gz
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      5112 Nov 21 06:59 queuedata.json
[2025-12-01 06:15:33] -rwx------ 1 mf493845 unix-user     36292 Nov 21 07:00 runpilot2-wrapper.sh
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user       100 Dec  1 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 06:15:33] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  1 00:08 run_atlas
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user       105 Dec  1 00:08 job.xml
[2025-12-01 06:15:33] -rw-r--r-- 2 mf493845 unix-user 409435728 Dec  1 01:52 EVNT.47493127._002272.pool.root.1
[2025-12-01 06:15:33] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 01:52 start_atlas.sh
[2025-12-01 06:15:33] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 01:52 shared
[2025-12-01 06:15:33] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  1 01:52 input.tar.gz
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      6391 Dec  1 01:52 init_data.xml
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user         0 Dec  1 01:52 boinc_setup_complete
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      8192 Dec  1 01:52 boinc_mmap_file
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user         0 Dec  1 01:52 boinc_lockfile
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      2786 Dec  1 01:52 pandaJob.out
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user    993253 Dec  1 01:53 agis_schedconf.cvmfs.json
[2025-12-01 06:15:33] drwx------ 5 mf493845 unix-user       440 Dec  1 01:53 pilot3
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user 905137634 Dec  1 06:14 HITS.47533967._002434.pool.root.1
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      1026 Dec  1 06:14 memory_monitor_summary.json
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user   1516240 Dec  1 06:14 agis_ddmendpoints.agis.ALL.json
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user   1558210 Dec  1 06:14 log.47533967._002434.job.log.tgz.1
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      8590 Dec  1 06:14 heartbeat.json
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user        95 Dec  1 06:15 pilot_heartbeat.json
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      4835 Dec  1 06:15 pilotlog.txt
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user   2273803 Dec  1 06:15 log.47533967._002434.job.log.1
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user       353 Dec  1 06:15 output.list
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user       620 Dec  1 06:15 runtime_log
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user   3850240 Dec  1 06:15 result.tar.gz
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user      9221 Dec  1 06:15 runtime_log.err
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user       650 Dec  1 06:15 7E3MDmLNZg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkOHKDmgVLUYo.diag
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user     21726 Dec  1 06:15 stderr.txt
[2025-12-01 06:15:33] HITS file was successfully produced:
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user 905137634 Dec  1 06:14 shared/HITS.pool.root.1
[2025-12-01 06:15:33]  *** Contents of shared directory: ***
[2025-12-01 06:15:33] total 1288120
[2025-12-01 06:15:33] -rw-r--r-- 2 mf493845 unix-user 409435728 Dec  1 01:52 ATLAS.root_0
[2025-12-01 06:15:33] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 01:52 start_atlas.sh
[2025-12-01 06:15:33] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  1 01:52 input.tar.gz
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user 905137634 Dec  1 06:14 HITS.pool.root.1
[2025-12-01 06:15:33] -rw------- 1 mf493845 unix-user   3850240 Dec  1 06:15 result.tar.gz
06:15:35 (7151): run_atlas exited; CPU time 118870.717331
06:15:35 (7151): called boinc_finish(0)

</stderr_txt>
]]>

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