Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
08:34:50 (236679): wrapper (7.7.26015): starting
08:34:50 (236679): wrapper: running run_atlas (--nthreads 10)
[2025-12-01 08:34:50] Arguments: --nthreads 10
[2025-12-01 08:34:50] Threads: 10
[2025-12-01 08:34:50] Checking for CVMFS
[2025-12-01 08:34:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 08:34:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 08:34:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 08:34:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 08:34:50] 2.13.3.0 4125 55 61472 153525 0 111 3947970 4096000 10703 130560 0 3311537 99.947 229748 755 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-01 08:34:50] CVMFS is ok
[2025-12-01 08:34:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 08:34:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 08:34:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 08:34:50] Further information can be found at the LHC@home message board.
[2025-12-01 08:34:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 08:34:50] Checking for apptainer binary...
[2025-12-01 08:34:50] apptainer is not installed, using version from CVMFS
[2025-12-01 08:34:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 08:34:51] 7950x-linux
[2025-12-01 08:34:51] apptainer works
[2025-12-01 08:34:51] Set ATHENA_PROC_NUMBER=10
[2025-12-01 08:34:51] Set ATHENA_CORE_NUMBER=10
[2025-12-01 08:34:51] Starting ATLAS job with PandaID=6894267694
[2025-12-01 08:34:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc523/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:17:16]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:17:16] 2025-12-02 10:16:43,519 | INFO     | monitor loop #4611: job 0:6894267694 is in state 'finished'
[2025-12-02 02:17:16] 2025-12-02 10:16:43,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 02:17:16] 2025-12-02 10:16:43,946 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 02:17:16] 2025-12-02 10:16:43,949 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.1285625000005
[2025-12-02 02:17:16] 2025-12-02 10:16:43,953 | INFO     | using path: /var/lib/multiboinc/boinc523/slots/2/PanDA_Pilot-6894267694/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 02:17:16] 2025-12-02 10:16:43,953 | INFO     | extracted standard info from prmon json
[2025-12-02 02:17:16] 2025-12-02 10:16:43,953 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 02:17:16] 2025-12-02 10:16:43,954 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 02:17:16] 2025-12-02 10:16:43,963 | INFO     | fitting pss+swap vs Time
[2025-12-02 02:17:16] 2025-12-02 10:16:43,964 | INFO     | sum of square deviations: 352841387745.0
[2025-12-02 02:17:16] 2025-12-02 10:16:43,976 | INFO     | sum of deviations: 2666119689241.499
[2025-12-02 02:17:16] 2025-12-02 10:16:43,976 | INFO     | mean x: 1764638748.5
[2025-12-02 02:17:16] 2025-12-02 10:16:43,976 | INFO     | mean y: 3155101.054597701
[2025-12-02 02:17:16] 2025-12-02 10:16:43,976 | INFO     | intersect: -13330706161.203169
[2025-12-02 02:17:16] 2025-12-02 10:16:43,976 | INFO     | chi2: 5.362009165477295
[2025-12-02 02:17:16] 2025-12-02 10:16:43,977 | INFO     | sum of square deviations: 347796065240.0
[2025-12-02 02:17:16] 2025-12-02 10:16:43,989 | INFO     | sum of deviations: 2967411536482.0
[2025-12-02 02:17:16] 2025-12-02 10:16:43,989 | INFO     | mean x: 1764638596.0
[2025-12-02 02:17:16] 2025-12-02 10:16:43,989 | INFO     | mean y: 3164199.523580366
[2025-12-02 02:17:16] 2025-12-02 10:16:43,989 | INFO     | intersect: -15052810984.894808
[2025-12-02 02:17:16] 2025-12-02 10:16:43,990 | INFO     | chi2: 3.1050634793573852
[2025-12-02 02:17:16] 2025-12-02 10:16:43,990 | INFO     | current chi2=3.1050634793573852 (change=42.0914179082536 %)
[2025-12-02 02:17:16] 2025-12-02 10:16:43,990 | INFO     | sum of square deviations: 342799069222.5
[2025-12-02 02:17:16] 2025-12-02 10:16:44,008 | INFO     | sum of deviations: 2978153302385.0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,008 | INFO     | mean x: 1764638443.5
[2025-12-02 02:17:16] 2025-12-02 10:16:44,008 | INFO     | mean y: 3164523.311411992
[2025-12-02 02:17:16] 2025-12-02 10:16:44,008 | INFO     | intersect: -15327576659.693262
[2025-12-02 02:17:16] 2025-12-02 10:16:44,009 | INFO     | chi2: 3.0050330617887235
[2025-12-02 02:17:16] 2025-12-02 10:16:44,009 | INFO     | current chi2=3.0050330617887235 (change=3.221525686468855 %)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,009 | INFO     | right removable region: 1033
[2025-12-02 02:17:16] 2025-12-02 10:16:44,009 | INFO     | sum of square deviations: 347796065240.0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,021 | INFO     | sum of deviations: 2323263334553.002
[2025-12-02 02:17:16] 2025-12-02 10:16:44,021 | INFO     | mean x: 1764638901.0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,021 | INFO     | mean y: 3165454.593840231
[2025-12-02 02:17:16] 2025-12-02 10:16:44,021 | INFO     | intersect: -11784549436.86174
[2025-12-02 02:17:16] 2025-12-02 10:16:44,022 | INFO     | chi2: 2.846834179099378
[2025-12-02 02:17:16] 2025-12-02 10:16:44,022 | INFO     | current chi2=2.846834179099378 (change=46.907323519168784 %)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,022 | INFO     | sum of square deviations: 342799069222.5
[2025-12-02 02:17:16] 2025-12-02 10:16:44,037 | INFO     | sum of deviations: 2211975825580.0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,037 | INFO     | mean x: 1764639053.5
[2025-12-02 02:17:16] 2025-12-02 10:16:44,037 | INFO     | mean y: 3168850.4642166346
[2025-12-02 02:17:16] 2025-12-02 10:16:44,037 | INFO     | intersect: -11383498377.277988
[2025-12-02 02:17:16] 2025-12-02 10:16:44,037 | INFO     | chi2: 2.7140435357779076
[2025-12-02 02:17:16] 2025-12-02 10:16:44,038 | INFO     | current chi2=2.7140435357779076 (change=4.664502214297562 %)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,038 | INFO     | left removable region: 20
[2025-12-02 02:17:16] 2025-12-02 10:16:44,038 | INFO     | sum of square deviations: 322334162722.0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,049 | INFO     | sum of deviations: 2352099754997.0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,049 | INFO     | mean x: 1764639023.0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,049 | INFO     | mean y: 3183646.0454096743
[2025-12-02 02:17:16] 2025-12-02 10:16:44,049 | INFO     | intersect: -12873537141.493868
[2025-12-02 02:17:16] 2025-12-02 10:16:44,050 | INFO     | chi2: 0.23303158415686342
[2025-12-02 02:17:16] 2025-12-02 10:16:44,050 | INFO     | current memory leak: 7.30 B/s (using 1013 data points, chi2=0.23)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | could have reported an average CPU frequency of 4000 MHz (39 samples)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | ..............................
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . Timing measurements:
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . get job = 0 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . initial setup = 8 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . payload setup = 6 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . stage-in = 0 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . payload execution = 63658 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . stage-out = 3 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | . log creation = 0 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,051 | INFO     | ..............................
[2025-12-02 02:17:16] 2025-12-02 10:16:44,104 | INFO     | 
[2025-12-02 02:17:16] 2025-12-02 10:16:44,104 | INFO     | job summary report
[2025-12-02 02:17:16] 2025-12-02 10:16:44,104 | INFO     | --------------------------------------------------
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | PanDA job id: 6894267694
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | task id: 47533967
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | errors: (none)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | pilot state: finished 
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | transexitcode: 0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | exeerrorcode: 0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | exeerrordiag: 
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | exitcode: 0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | exitmsg: OK
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | cpuconsumptiontime: 135675 s
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | nevents: 1000
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | neventsw: 0
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | pid: 259841
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | pgrp: 259841
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | corecount: 10
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | event service: False
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | sizes: {0: 2284329, 5: 2284591, 11: 2284647, 63668: 2339238, 63672: 2348260, 63673: 2348316, 63679: 2348690}
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | --------------------------------------------------
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | 
[2025-12-02 02:17:16] 2025-12-02 10:16:44,105 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc523/slots/2
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,126 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 02:17:16] 2025-12-02 10:16:44,127 | INFO     | job 6894267694 has completed (purged errors)
[2025-12-02 02:17:16] 2025-12-02 10:16:44,127 | INFO     | overall cleanup function is called
[2025-12-02 02:17:16] 2025-12-02 10:16:45,144 | INFO     | --- collectZombieJob: --- 10, [259841]
[2025-12-02 02:17:16] 2025-12-02 10:16:45,144 | INFO     | zombie collector waiting for pid 259841
[2025-12-02 02:17:16] 2025-12-02 10:16:45,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 02:17:16] 2025-12-02 10:16:45,144 | INFO     | collected zombie processes
[2025-12-02 02:17:16] 2025-12-02 10:16:45,144 | INFO     | will attempt to kill all subprocesses of pid=259841
[2025-12-02 02:17:16] 2025-12-02 10:16:45,459 | INFO     | process IDs to be killed: [259841] (in reverse order)
[2025-12-02 02:17:16] 2025-12-02 10:16:45,587 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:17:16] 2025-12-02 10:16:45,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:17:16] 2025-12-02 10:16:45,593 | INFO     | did not find any defunct processes belonging to 259841
[2025-12-02 02:17:16] 2025-12-02 10:16:45,598 | INFO     | did not find any defunct processes belonging to 259841
[2025-12-02 02:17:16] 2025-12-02 10:16:45,599 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:17:16] 2025-12-02 10:16:45,599 | INFO     | ready for new job
[2025-12-02 02:17:16] 2025-12-02 10:16:45,599 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:17:16] 2025-12-02 10:16:45,602 | INFO     | ***************************************
[2025-12-02 02:17:16] 2025-12-02 10:16:45,602 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:17:16] 2025-12-02 10:16:45,602 | INFO     | ***************************************
[2025-12-02 02:17:16] 2025-12-02 10:16:45,602 | INFO     | 
[2025-12-02 02:17:16] 2025-12-02 10:16:45,606 | INFO     | architecture information:
[2025-12-02 02:17:16] 2025-12-02 10:16:45,610 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:17:16] 2025-12-02 10:16:45,626 | INFO     | cat /etc/os-release:
[2025-12-02 02:17:16] NAME="CentOS Linux"
[2025-12-02 02:17:16] VERSION="7 (Core)"
[2025-12-02 02:17:16] ID="centos"
[2025-12-02 02:17:16] ID_LIKE="rhel fedora"
[2025-12-02 02:17:16] VERSION_ID="7"
[2025-12-02 02:17:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:17:16] ANSI_COLOR="0;31"
[2025-12-02 02:17:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:17:16] HOME_URL="https://www.centos.org/"
[2025-12-02 02:17:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:17:16] 
[2025-12-02 02:17:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:17:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:17:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:17:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:17:16] 
[2025-12-02 02:17:16] 2025-12-02 10:16:45,627 | INFO     | ***************************************
[2025-12-02 02:17:16] 2025-12-02 10:16:46,129 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc523/slots/2
[2025-12-02 02:17:16] 2025-12-02 10:16:46,142 | INFO     | sufficient remaining disk space (177584734208 B)
[2025-12-02 02:17:16] 2025-12-02 10:16:46,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:17:16] 2025-12-02 10:16:46,142 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:17:16] 2025-12-02 10:16:46,142 | INFO     | update_server=False
[2025-12-02 02:17:16] 2025-12-02 10:16:46,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:17:16] 2025-12-02 10:16:46,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:17:16] 2025-12-02 10:16:46,947 | INFO     | all job control threads have been joined
[2025-12-02 02:17:16] 2025-12-02 10:16:47,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:17:16] 2025-12-02 10:16:47,027 | INFO     | aborting loop
[2025-12-02 02:17:16] 2025-12-02 10:16:47,147 | INFO     | all data control threads have been joined
[2025-12-02 02:17:16] 2025-12-02 10:16:47,147 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:47,176 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:47,543 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:47,553 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:47,583 | INFO     | all payload control threads have been joined
[2025-12-02 02:17:16] 2025-12-02 10:16:47,659 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:47,738 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:47,952 | INFO     | [job] control thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:48,035 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:48,055 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:48,149 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:48,152 | INFO     | [data] control thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:48,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:17:16] 2025-12-02 10:16:48,550 | INFO     | [job] validate thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:48,588 | INFO     | [payload] control thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:49,121 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:17:16] 2025-12-02 10:16:50,126 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:52,454 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:54,753 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:17:16] 2025-12-02 10:16:56,630 | INFO     | job.realtimelogging is not enabled
[2025-12-02 02:17:16] 2025-12-02 10:16:57,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:17:16] 2025-12-02 10:16:59,666 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123905477584704)>', '<ExcThread(monitor, started 123905134012160)>']
[2025-12-02 02:17:16] 2025-12-02 10:17:04,691 | INFO     | all workflow threads have been joined
[2025-12-02 02:17:16] 2025-12-02 10:17:04,691 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:17:16] 2025-12-02 10:17:04,691 | INFO     | traces error code: 0
[2025-12-02 02:17:16] 2025-12-02 10:17:04,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:17:16] 2025-12-02 10:17:16,324 | INFO     | PID=244301 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 02:17:16] 2025-12-02 10:17:16,325 | INFO     | .. there are 14 such processes running
[2025-12-02 02:17:16] 2025-12-02 10:17:16,325 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:17:16] 2025-12-02 10:17:16,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:17:16] 2025-12-02 10:17:16,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:17:16] 2025-12-02 10:17:16,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:17:16] 2025-12-02 10:17:16,325 | INFO     | [monitor] control thread has ended
[2025-12-02 02:17:16] 2025-12-02 10:17:16,461 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:17:16] 2025-12-02 10:17:16,466 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:17:16] 2025-12-02 10:17:16,467 [wrapper] pilotpid: 244301
[2025-12-02 02:17:16] 2025-12-02 10:17:16,468 [wrapper] Pilot exit status: 0
[2025-12-02 02:17:16] 2025-12-02 10:17:16,481 [wrapper] pandaids: 6894267694
[2025-12-02 02:17:16] 2025-12-02 10:17:16,555 [wrapper] cleanup supervisor_pilot 1657208 244302
[2025-12-02 02:17:16] 2025-12-02 10:17:16,560 [wrapper] Test setup, not cleaning
[2025-12-02 02:17:16] 2025-12-02 10:17:16,562 [wrapper] apfmon messages muted
[2025-12-02 02:17:16] 2025-12-02 10:17:16,564 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:17:16] 2025-12-02 10:17:16,565 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:17:16]  *** Error codes and diagnostics ***
[2025-12-02 02:17:16]     "exeErrorCode": 0,
[2025-12-02 02:17:16]     "exeErrorDiag": "",
[2025-12-02 02:17:16]     "pilotErrorCode": 0,
[2025-12-02 02:17:16]     "pilotErrorDiag": "",
[2025-12-02 02:17:16]  *** Listing of results directory ***
[2025-12-02 02:17:16] total 1329092
[2025-12-02 02:17:16] -rw-r--r-- 1 root root    576529 Nov 20 21:09 pilot3.tar.gz
[2025-12-02 02:17:16] -rw-r--r-- 1 root root      5112 Nov 20 21:24 queuedata.json
[2025-12-02 02:17:16] -rwx------ 1 4871 1028     36292 Nov 20 21:25 runpilot2-wrapper.sh
[2025-12-02 02:17:16] -rw-r--r-- 1 root root       100 Dec  1 08:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:17:16] -rwxr-xr-x 1 root root      7986 Dec  1 08:34 run_atlas
[2025-12-02 02:17:16] -rw-r--r-- 1 root root       105 Dec  1 08:34 job.xml
[2025-12-02 02:17:16] -rw-r--r-- 2 root root 412695246 Dec  1 08:34 EVNT.47493127._002247.pool.root.1
[2025-12-02 02:17:16] drwxrwx--x 2 root root      4096 Dec  1 08:34 shared
[2025-12-02 02:17:16] -rw-r--r-- 2 root root    590105 Dec  1 08:34 input.tar.gz
[2025-12-02 02:17:16] -rw-r--r-- 2 root root     15847 Dec  1 08:34 start_atlas.sh
[2025-12-02 02:17:16] -rw-r--r-- 1 root root         0 Dec  1 08:34 boinc_lockfile
[2025-12-02 02:17:16] -rw-r--r-- 1 root root      2786 Dec  1 08:34 pandaJob.out
[2025-12-02 02:17:16] -rw------- 1 root root    992142 Dec  1 08:35 agis_schedconf.cvmfs.json
[2025-12-02 02:17:16] drwxr-xr-x 5  320  320      4096 Dec  1 08:35 pilot3
[2025-12-02 02:17:16] -rw-r--r-- 1 root root      7067 Dec  1 08:36 init_data.xml
[2025-12-02 02:17:16] -rw-r--r-- 1 root root       533 Dec  2 02:09 boinc_task_state.xml
[2025-12-02 02:17:16] -rw------- 1 root root 921477424 Dec  2 02:16 HITS.47533967._002185.pool.root.1
[2025-12-02 02:17:16] -rw------- 1 root root        95 Dec  2 02:16 pilot_heartbeat.json
[2025-12-02 02:17:16] -rw------- 1 root root      1055 Dec  2 02:16 memory_monitor_summary.json
[2025-12-02 02:17:16] -rw------- 1 root root   1516240 Dec  2 02:16 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:17:16] -rw------- 1 root root   2406076 Dec  2 02:16 log.47533967._002185.job.log.tgz.1
[2025-12-02 02:17:16] -rw------- 1 root root      8601 Dec  2 02:16 heartbeat.json
[2025-12-02 02:17:16] -rw-r--r-- 1 root root        29 Dec  2 02:17 wrapper_checkpoint.txt
[2025-12-02 02:17:16] -rw-r--r-- 1 root root      8192 Dec  2 02:17 boinc_mmap_file
[2025-12-02 02:17:16] -rw------- 1 root root       822 Dec  2 02:17 pilotlog.txt
[2025-12-02 02:17:16] -rw------- 1 root root   9045164 Dec  2 02:17 log.47533967._002185.job.log.1
[2025-12-02 02:17:16] -rw------- 1 root root       353 Dec  2 02:17 output.list
[2025-12-02 02:17:16] -rw-r--r-- 1 root root       620 Dec  2 02:17 runtime_log
[2025-12-02 02:17:16] -rw------- 1 root root  11468800 Dec  2 02:17 result.tar.gz
[2025-12-02 02:17:16] -rw-r--r-- 1 root root      9021 Dec  2 02:17 runtime_log.err
[2025-12-02 02:17:16] -rw------- 1 root root       663 Dec  2 02:17 aD2NDmIpYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY6IKDmauWxan.diag
[2025-12-02 02:17:16] -rw-r--r-- 1 root root     21362 Dec  2 02:17 stderr.txt
[2025-12-02 02:17:16] HITS file was successfully produced:
[2025-12-02 02:17:16] -rw------- 1 root root 921477424 Dec  2 02:16 shared/HITS.pool.root.1
[2025-12-02 02:17:16]  *** Contents of shared directory: ***
[2025-12-02 02:17:16] total 1314712
[2025-12-02 02:17:16] -rw-r--r-- 2 root root 412695246 Dec  1 08:34 ATLAS.root_0
[2025-12-02 02:17:16] -rw-r--r-- 2 root root    590105 Dec  1 08:34 input.tar.gz
[2025-12-02 02:17:16] -rw-r--r-- 2 root root     15847 Dec  1 08:34 start_atlas.sh
[2025-12-02 02:17:16] -rw------- 1 root root 921477424 Dec  2 02:16 HITS.pool.root.1
[2025-12-02 02:17:16] -rw------- 1 root root  11468800 Dec  2 02:17 result.tar.gz
02:17:18 (236679): run_atlas exited; CPU time 136158.512102
02:17:18 (236679): called boinc_finish(0)

</stderr_txt>
]]>

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