Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
08:35:25 (253492): wrapper (7.7.26015): starting
08:35:25 (253492): wrapper: running run_atlas (--nthreads 10)
[2025-12-01 08:35:25] Arguments: --nthreads 10
[2025-12-01 08:35:25] Threads: 10
[2025-12-01 08:35:25] Checking for CVMFS
[2025-12-01 08:35:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 08:35:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 08:35:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 08:35:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 08:35:26] 2.13.3.0 4125 55 54724 153525 0 111 3947970 4096000 11064 130560 0 3426570 99.949 229748 755 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-01 08:35:26] CVMFS is ok
[2025-12-01 08:35:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 08:35:26] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 08:35:26] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 08:35:26] Further information can be found at the LHC@home message board.
[2025-12-01 08:35:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 08:35:26] Checking for apptainer binary...
[2025-12-01 08:35:26] apptainer is not installed, using version from CVMFS
[2025-12-01 08:35:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 08:35:26] 7950x-linux
[2025-12-01 08:35:26] apptainer works
[2025-12-01 08:35:26] Set ATHENA_PROC_NUMBER=10
[2025-12-01 08:35:26] Set ATHENA_CORE_NUMBER=10
[2025-12-01 08:35:26] Starting ATLAS job with PandaID=6899449062
[2025-12-01 08:35:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc523/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:26:53]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:26:53] 2025-12-02 10:26:20,216 | INFO     | time since job start (64242s) is within the limit (172800.0s)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,883 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 02:26:53] 2025-12-02 10:26:21,887 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.1284374999996
[2025-12-02 02:26:53] 2025-12-02 10:26:21,891 | INFO     | using path: /var/lib/multiboinc/boinc523/slots/3/PanDA_Pilot-6899449062/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,891 | INFO     | extracted standard info from prmon json
[2025-12-02 02:26:53] 2025-12-02 10:26:21,891 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 02:26:53] 2025-12-02 10:26:21,891 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 02:26:53] 2025-12-02 10:26:21,901 | INFO     | fitting pss+swap vs Time
[2025-12-02 02:26:53] 2025-12-02 10:26:21,902 | INFO     | sum of square deviations: 362045493342.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,919 | INFO     | sum of deviations: 2612610229107.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,919 | INFO     | mean x: 1764639050.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,919 | INFO     | mean y: 3155894.6619183286
[2025-12-02 02:26:53] 2025-12-02 10:26:21,919 | INFO     | intersect: -12730917909.584019
[2025-12-02 02:26:53] 2025-12-02 10:26:21,920 | INFO     | chi2: 5.546505057202486
[2025-12-02 02:26:53] 2025-12-02 10:26:21,921 | INFO     | sum of square deviations: 356912597102.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,935 | INFO     | sum of deviations: 2926892081674.4995
[2025-12-02 02:26:53] 2025-12-02 10:26:21,935 | INFO     | mean x: 1764638897.5
[2025-12-02 02:26:53] 2025-12-02 10:26:21,935 | INFO     | mean y: 3165224.9513358776
[2025-12-02 02:26:53] 2025-12-02 10:26:21,935 | INFO     | intersect: -14467906006.618336
[2025-12-02 02:26:53] 2025-12-02 10:26:21,936 | INFO     | chi2: 3.1855215180320813
[2025-12-02 02:26:53] 2025-12-02 10:26:21,936 | INFO     | current chi2=3.1855215180320813 (change=42.56704924670571 %)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,936 | INFO     | sum of square deviations: 351828445962.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,948 | INFO     | sum of deviations: 2989119780576.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,948 | INFO     | mean x: 1764638745.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,953 | INFO     | mean y: 3167088.5407478428
[2025-12-02 02:26:53] 2025-12-02 10:26:21,953 | INFO     | intersect: -14989129977.797132
[2025-12-02 02:26:53] 2025-12-02 10:26:21,953 | INFO     | chi2: 2.9821429757098135
[2025-12-02 02:26:53] 2025-12-02 10:26:21,953 | INFO     | current chi2=2.9821429757098135 (change=6.38446612810542 %)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,953 | INFO     | right removable region: 1042
[2025-12-02 02:26:53] 2025-12-02 10:26:21,954 | INFO     | sum of square deviations: 356912597102.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,966 | INFO     | sum of deviations: 2266838243510.497
[2025-12-02 02:26:53] 2025-12-02 10:26:21,967 | INFO     | mean x: 1764639202.5
[2025-12-02 02:26:53] 2025-12-02 10:26:21,967 | INFO     | mean y: 3166158.447519084
[2025-12-02 02:26:53] 2025-12-02 10:26:21,967 | INFO     | intersect: -11204484293.524857
[2025-12-02 02:26:53] 2025-12-02 10:26:21,967 | INFO     | chi2: 3.048460921413872
[2025-12-02 02:26:53] 2025-12-02 10:26:21,967 | INFO     | current chi2=3.048460921413872 (change=45.03816565613236 %)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,968 | INFO     | sum of square deviations: 351828445962.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,980 | INFO     | sum of deviations: 2154045981383.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,980 | INFO     | mean x: 1764639355.0
[2025-12-02 02:26:53] 2025-12-02 10:26:21,980 | INFO     | mean y: 3169541.171620326
[2025-12-02 02:26:53] 2025-12-02 10:26:21,980 | INFO     | intersect: -10800716144.747553
[2025-12-02 02:26:53] 2025-12-02 10:26:21,981 | INFO     | chi2: 2.9101467975530992
[2025-12-02 02:26:53] 2025-12-02 10:26:21,981 | INFO     | current chi2=2.9101467975530992 (change=4.537178839629759 %)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,981 | INFO     | left removable region: 20
[2025-12-02 02:26:53] 2025-12-02 10:26:21,982 | INFO     | sum of square deviations: 331002059195.5
[2025-12-02 02:26:53] 2025-12-02 10:26:21,994 | INFO     | sum of deviations: 2359626207697.5
[2025-12-02 02:26:53] 2025-12-02 10:26:21,994 | INFO     | mean x: 1764639324.5
[2025-12-02 02:26:53] 2025-12-02 10:26:21,994 | INFO     | mean y: 3185980.3003913895
[2025-12-02 02:26:53] 2025-12-02 10:26:21,994 | INFO     | intersect: -12576461431.392874
[2025-12-02 02:26:53] 2025-12-02 10:26:21,994 | INFO     | chi2: 0.22779056362017075
[2025-12-02 02:26:53] 2025-12-02 10:26:21,994 | INFO     | current memory leak: 7.13 B/s (using 1022 data points, chi2=0.23)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | could have reported an average CPU frequency of 4000 MHz (39 samples)
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | ..............................
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . Timing measurements:
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . get job = 0 s
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . initial setup = 2 s
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . payload setup = 5 s
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . stage-in = 0 s
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . payload execution = 64205 s
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . stage-out = 3 s
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | . log creation = 0 s
[2025-12-02 02:26:53] 2025-12-02 10:26:21,995 | INFO     | ..............................
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | 
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | job summary report
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | --------------------------------------------------
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | PanDA job id: 6899449062
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | task id: 47556173
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | errors: (none)
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | pilot state: finished 
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | transexitcode: 0
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | exeerrorcode: 0
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | exeerrordiag: 
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | exitcode: 0
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | exitmsg: OK
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | cpuconsumptiontime: 136919 s
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | nevents: 1000
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | neventsw: 0
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | pid: 281578
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | pgrp: 281578
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | corecount: 10
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | event service: False
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | sizes: {0: 2284157, 1: 2284356, 5: 2284618, 11: 2284674, 64215: 2338241, 64219: 2347291, 64222: 2347475, 64228: 2347721}
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | --------------------------------------------------
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | 
[2025-12-02 02:26:53] 2025-12-02 10:26:22,054 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc523/slots/3
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,075 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 02:26:53] 2025-12-02 10:26:22,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 02:26:53] 2025-12-02 10:26:22,076 | INFO     | job 6899449062 has completed (purged errors)
[2025-12-02 02:26:53] 2025-12-02 10:26:22,076 | INFO     | overall cleanup function is called
[2025-12-02 02:26:53] 2025-12-02 10:26:23,090 | INFO     | --- collectZombieJob: --- 10, [281578]
[2025-12-02 02:26:53] 2025-12-02 10:26:23,090 | INFO     | zombie collector waiting for pid 281578
[2025-12-02 02:26:53] 2025-12-02 10:26:23,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 02:26:53] 2025-12-02 10:26:23,090 | INFO     | collected zombie processes
[2025-12-02 02:26:53] 2025-12-02 10:26:23,090 | INFO     | will attempt to kill all subprocesses of pid=281578
[2025-12-02 02:26:53] 2025-12-02 10:26:23,423 | INFO     | process IDs to be killed: [281578] (in reverse order)
[2025-12-02 02:26:53] 2025-12-02 10:26:23,576 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:26:53] 2025-12-02 10:26:23,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:26:53] 2025-12-02 10:26:23,582 | INFO     | did not find any defunct processes belonging to 281578
[2025-12-02 02:26:53] 2025-12-02 10:26:23,587 | INFO     | did not find any defunct processes belonging to 281578
[2025-12-02 02:26:53] 2025-12-02 10:26:23,587 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:26:53] 2025-12-02 10:26:23,588 | INFO     | ready for new job
[2025-12-02 02:26:53] 2025-12-02 10:26:23,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:26:53] 2025-12-02 10:26:23,591 | INFO     | ***************************************
[2025-12-02 02:26:53] 2025-12-02 10:26:23,591 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:26:53] 2025-12-02 10:26:23,591 | INFO     | ***************************************
[2025-12-02 02:26:53] 2025-12-02 10:26:23,591 | INFO     | 
[2025-12-02 02:26:53] 2025-12-02 10:26:23,593 | INFO     | architecture information:
[2025-12-02 02:26:53] 2025-12-02 10:26:23,593 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:26:53] 2025-12-02 10:26:23,621 | INFO     | cat /etc/os-release:
[2025-12-02 02:26:53] NAME="CentOS Linux"
[2025-12-02 02:26:53] VERSION="7 (Core)"
[2025-12-02 02:26:53] ID="centos"
[2025-12-02 02:26:53] ID_LIKE="rhel fedora"
[2025-12-02 02:26:53] VERSION_ID="7"
[2025-12-02 02:26:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:26:53] ANSI_COLOR="0;31"
[2025-12-02 02:26:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:26:53] HOME_URL="https://www.centos.org/"
[2025-12-02 02:26:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:26:53] 
[2025-12-02 02:26:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:26:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:26:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:26:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:26:53] 
[2025-12-02 02:26:53] 2025-12-02 10:26:23,622 | INFO     | ***************************************
[2025-12-02 02:26:53] 2025-12-02 10:26:24,124 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc523/slots/3
[2025-12-02 02:26:53] 2025-12-02 10:26:24,142 | INFO     | sufficient remaining disk space (178280988672 B)
[2025-12-02 02:26:53] 2025-12-02 10:26:24,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:26:53] 2025-12-02 10:26:24,142 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:26:53] 2025-12-02 10:26:24,142 | INFO     | update_server=False
[2025-12-02 02:26:53] 2025-12-02 10:26:24,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:26:53] 2025-12-02 10:26:24,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:26:53] 2025-12-02 10:26:24,395 | INFO     | all data control threads have been joined
[2025-12-02 02:26:53] 2025-12-02 10:26:24,589 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 02:26:53] 2025-12-02 10:26:24,589 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 02:26:53] 2025-12-02 10:26:24,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:26:53] 2025-12-02 10:26:24,589 | INFO     | will abort loop
[2025-12-02 02:26:53] 2025-12-02 10:26:25,148 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,158 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:26:53] 2025-12-02 10:26:25,168 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,297 | INFO     | all payload control threads have been joined
[2025-12-02 02:26:53] 2025-12-02 10:26:25,319 | INFO     | [job] validate thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,319 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,397 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,400 | INFO     | [data] control thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,464 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,594 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:25,618 | INFO     | all job control threads have been joined
[2025-12-02 02:26:53] 2025-12-02 10:26:26,073 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:26,148 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:26,302 | INFO     | [payload] control thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:26,450 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:26,512 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:26:53] 2025-12-02 10:26:26,623 | INFO     | [job] control thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:26,651 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:27,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:26:53] 2025-12-02 10:26:28,061 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:30,517 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:26:53] 2025-12-02 10:26:32,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125967733868352)>', '<ExcThread(monitor, started 125966978356992)>']
[2025-12-02 02:26:53] 2025-12-02 10:26:37,039 | INFO     | all workflow threads have been joined
[2025-12-02 02:26:53] 2025-12-02 10:26:37,039 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:26:53] 2025-12-02 10:26:37,039 | INFO     | traces error code: 0
[2025-12-02 02:26:53] 2025-12-02 10:26:37,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:26:53] 2025-12-02 10:26:53,608 | INFO     | PID=270919 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 02:26:53] 2025-12-02 10:26:53,609 | INFO     | .. there are 14 such processes running
[2025-12-02 02:26:53] 2025-12-02 10:26:53,609 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:26:53] 2025-12-02 10:26:53,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:26:53] 2025-12-02 10:26:53,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:26:53] 2025-12-02 10:26:53,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:26:53] 2025-12-02 10:26:53,609 | INFO     | [monitor] control thread has ended
[2025-12-02 02:26:53] 2025-12-02 10:26:53,706 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:26:53] 2025-12-02 10:26:53,707 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:26:53] 2025-12-02 10:26:53,709 [wrapper] pilotpid: 270919
[2025-12-02 02:26:53] 2025-12-02 10:26:53,711 [wrapper] Pilot exit status: 0
[2025-12-02 02:26:53] 2025-12-02 10:26:53,719 [wrapper] pandaids: 6899449062
[2025-12-02 02:26:53] 2025-12-02 10:26:53,768 [wrapper] cleanup supervisor_pilot 1741054 270921
[2025-12-02 02:26:53] 2025-12-02 10:26:53,771 [wrapper] Test setup, not cleaning
[2025-12-02 02:26:53] 2025-12-02 10:26:53,777 [wrapper] apfmon messages muted
[2025-12-02 02:26:53] 2025-12-02 10:26:53,788 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:26:53] 2025-12-02 10:26:53,790 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:26:53]  *** Error codes and diagnostics ***
[2025-12-02 02:26:53]     "exeErrorCode": 0,
[2025-12-02 02:26:53]     "exeErrorDiag": "",
[2025-12-02 02:26:53]     "pilotErrorCode": 0,
[2025-12-02 02:26:53]     "pilotErrorDiag": "",
[2025-12-02 02:26:53]  *** Listing of results directory ***
[2025-12-02 02:26:53] total 1327004
[2025-12-02 02:26:53] -rw-r--r-- 1 root root    576529 Nov 26 18:19 pilot3.tar.gz
[2025-12-02 02:26:53] -rwx------ 1 4871 1028     36292 Nov 26 18:43 runpilot2-wrapper.sh
[2025-12-02 02:26:53] -rw-r--r-- 1 root root      5112 Nov 26 18:43 queuedata.json
[2025-12-02 02:26:53] -rw-r--r-- 1 root root       100 Dec  1 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:26:53] -rwxr-xr-x 1 root root      7986 Dec  1 08:35 run_atlas
[2025-12-02 02:26:53] -rw-r--r-- 1 root root       105 Dec  1 08:35 job.xml
[2025-12-02 02:26:53] -rw-r--r-- 2 root root 409740764 Dec  1 08:35 EVNT.47483658._003306.pool.root.1
[2025-12-02 02:26:53] -rw-r--r-- 2 root root     15847 Dec  1 08:35 start_atlas.sh
[2025-12-02 02:26:53] drwxrwx--x 2 root root      4096 Dec  1 08:35 shared
[2025-12-02 02:26:53] -rw-r--r-- 2 root root    590108 Dec  1 08:35 input.tar.gz
[2025-12-02 02:26:53] -rw-r--r-- 1 root root         0 Dec  1 08:35 boinc_lockfile
[2025-12-02 02:26:53] -rw-r--r-- 1 root root      2785 Dec  1 08:35 pandaJob.out
[2025-12-02 02:26:53] -rw------- 1 root root    992142 Dec  1 08:35 agis_schedconf.cvmfs.json
[2025-12-02 02:26:53] drwxr-xr-x 5  320  320      4096 Dec  1 08:35 pilot3
[2025-12-02 02:26:53] -rw-r--r-- 1 root root      7066 Dec  1 08:36 init_data.xml
[2025-12-02 02:26:53] -rw-r--r-- 1 root root       533 Dec  2 02:16 boinc_task_state.xml
[2025-12-02 02:26:53] -rw------- 1 root root 922141463 Dec  2 02:25 HITS.47556173._002630.pool.root.1
[2025-12-02 02:26:53] -rw------- 1 root root      1055 Dec  2 02:26 memory_monitor_summary.json
[2025-12-02 02:26:53] -rw------- 1 root root   1516240 Dec  2 02:26 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:26:53] -rw------- 1 root root   2410807 Dec  2 02:26 log.47556173._002630.job.log.tgz.1
[2025-12-02 02:26:53] -rw------- 1 root root        95 Dec  2 02:26 pilot_heartbeat.json
[2025-12-02 02:26:53] -rw------- 1 root root      7932 Dec  2 02:26 heartbeat.json
[2025-12-02 02:26:53] -rw-r--r-- 1 root root      8192 Dec  2 02:26 boinc_mmap_file
[2025-12-02 02:26:53] -rw-r--r-- 1 root root        29 Dec  2 02:26 wrapper_checkpoint.txt
[2025-12-02 02:26:53] -rw------- 1 root root       822 Dec  2 02:26 pilotlog.txt
[2025-12-02 02:26:53] -rw------- 1 root root   9117154 Dec  2 02:26 log.47556173._002630.job.log.1
[2025-12-02 02:26:53] -rw------- 1 root root       353 Dec  2 02:26 output.list
[2025-12-02 02:26:53] -rw-r--r-- 1 root root       620 Dec  2 02:26 runtime_log
[2025-12-02 02:26:53] -rw------- 1 root root  11550720 Dec  2 02:26 result.tar.gz
[2025-12-02 02:26:53] -rw-r--r-- 1 root root      9021 Dec  2 02:26 runtime_log.err
[2025-12-02 02:26:53] -rw------- 1 root root       663 Dec  2 02:26 8N9MDmt9gi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5VKKDmIkZWQn.diag
[2025-12-02 02:26:53] -rw-r--r-- 1 root root     21376 Dec  2 02:26 stderr.txt
[2025-12-02 02:26:53] HITS file was successfully produced:
[2025-12-02 02:26:53] -rw------- 1 root root 922141463 Dec  2 02:25 shared/HITS.pool.root.1
[2025-12-02 02:26:53]  *** Contents of shared directory: ***
[2025-12-02 02:26:53] total 1312556
[2025-12-02 02:26:53] -rw-r--r-- 2 root root 409740764 Dec  1 08:35 ATLAS.root_0
[2025-12-02 02:26:53] -rw-r--r-- 2 root root     15847 Dec  1 08:35 start_atlas.sh
[2025-12-02 02:26:53] -rw-r--r-- 2 root root    590108 Dec  1 08:35 input.tar.gz
[2025-12-02 02:26:53] -rw------- 1 root root 922141463 Dec  2 02:25 HITS.pool.root.1
[2025-12-02 02:26:53] -rw------- 1 root root  11550720 Dec  2 02:26 result.tar.gz
02:26:55 (253492): run_atlas exited; CPU time 137411.356218
02:26:55 (253492): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN