Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:25:27 (29562): wrapper (7.7.26015): starting
18:25:27 (29562): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:25:27] Arguments: --nthreads 8
[2025-12-02 18:25:27] Threads: 8
[2025-12-02 18:25:27] Checking for CVMFS
[2025-12-02 18:25:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:25:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:25:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:25:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:25:30] 2.11.2.0 24996 294167 141176 153564 3 84 22529663 25165825 2504 130560 11 140271239 99.889 76949324 2736 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 18:25:30] CVMFS is ok
[2025-12-02 18:25:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:25:30] Checking for apptainer binary...
[2025-12-02 18:25:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 18:25:30] Running /usr/bin/apptainer --version
[2025-12-02 18:25:30] apptainer version 1.3.2-1.el7
[2025-12-02 18:25:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:25:37] cg-vwn259.simple-grid.lan
[2025-12-02 18:25:37] apptainer works
[2025-12-02 18:25:37] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:25:37] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:25:37] Starting ATLAS job with PandaID=6893871912
[2025-12-02 18:25:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 17:39:56]  *** The last 200 lines of the pilot log: ***
[2025-12-03 17:39:56] 2025-12-03 16:38:42,638 | INFO     | time since job start (83361s) is within the limit (172800.0s)
[2025-12-03 17:39:56] 2025-12-03 16:38:44,331 | INFO     | monitor loop #5624: job 0:6893871912 is in state 'finished'
[2025-12-03 17:39:56] 2025-12-03 16:38:44,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:39:56] 2025-12-03 16:38:44,644 | INFO     | time since job start (83363s) is within the limit (172800.0s)
[2025-12-03 17:39:56] 2025-12-03 16:38:46,651 | INFO     | time since job start (83365s) is within the limit (172800.0s)
[2025-12-03 17:39:56] 2025-12-03 16:38:46,837 | INFO     | monitor loop #5625: job 0:6893871912 is in state 'finished'
[2025-12-03 17:39:56] 2025-12-03 16:38:46,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:39:56] 2025-12-03 16:38:48,662 | INFO     | time since job start (83367s) is within the limit (172800.0s)
[2025-12-03 17:39:56] 2025-12-03 16:38:49,345 | INFO     | monitor loop #5626: job 0:6893871912 is in state 'finished'
[2025-12-03 17:39:56] 2025-12-03 16:38:49,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:39:56] 2025-12-03 16:38:50,671 | INFO     | time since job start (83369s) is within the limit (172800.0s)
[2025-12-03 17:39:56] 2025-12-03 16:38:51,852 | INFO     | monitor loop #5627: job 0:6893871912 is in state 'finished'
[2025-12-03 17:39:56] 2025-12-03 16:38:51,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:39:56] 2025-12-03 16:38:52,247 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 17:39:56] 2025-12-03 16:38:52,250 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 17:39:56] 2025-12-03 16:38:52,252 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6893871912/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 17:39:56] 2025-12-03 16:38:52,253 | INFO     | extracted standard info from prmon json
[2025-12-03 17:39:56] 2025-12-03 16:38:52,253 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 17:39:56] 2025-12-03 16:38:52,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 17:39:56] 2025-12-03 16:38:52,301 | INFO     | fitting pss+swap vs Time
[2025-12-03 17:39:56] 2025-12-03 16:38:52,303 | INFO     | sum of square deviations: 774847547695.6044
[2025-12-03 17:39:56] 2025-12-03 16:38:52,387 | INFO     | sum of deviations: 2590016775279.807
[2025-12-03 17:39:56] 2025-12-03 16:38:52,387 | INFO     | mean x: 1764738427.1164334
[2025-12-03 17:39:56] 2025-12-03 16:38:52,387 | INFO     | mean y: 2837008.3809874724
[2025-12-03 17:39:56] 2025-12-03 16:38:52,397 | INFO     | intersect: -5896003536.19546
[2025-12-03 17:39:56] 2025-12-03 16:38:52,399 | INFO     | chi2: 22.36235712730033
[2025-12-03 17:39:56] 2025-12-03 16:38:52,400 | INFO     | sum of square deviations: 766314491624.3488
[2025-12-03 17:39:56] 2025-12-03 16:38:52,467 | INFO     | sum of deviations: 3033826706426.21
[2025-12-03 17:39:56] 2025-12-03 16:38:52,467 | INFO     | mean x: 1764738274.620562
[2025-12-03 17:39:56] 2025-12-03 16:38:52,468 | INFO     | mean y: 2844939.0355029586
[2025-12-03 17:39:56] 2025-12-03 16:38:52,468 | INFO     | intersect: -6983725412.841499
[2025-12-03 17:39:56] 2025-12-03 16:38:52,469 | INFO     | chi2: 19.180686004627667
[2025-12-03 17:39:56] 2025-12-03 16:38:52,469 | INFO     | current chi2=19.180686004627667 (change=14.227798548071787 %)
[2025-12-03 17:39:56] 2025-12-03 16:38:52,470 | INFO     | right removable region: 1351
[2025-12-03 17:39:56] 2025-12-03 16:38:52,471 | INFO     | sum of square deviations: 766313567474.3485
[2025-12-03 17:39:56] 2025-12-03 16:38:52,519 | INFO     | sum of deviations: 2044807274702.8892
[2025-12-03 17:39:56] 2025-12-03 16:38:52,520 | INFO     | mean x: 1764738579.620562
[2025-12-03 17:39:56] 2025-12-03 16:38:52,520 | INFO     | mean y: 2846750.1693786983
[2025-12-03 17:39:56] 2025-12-03 16:38:52,520 | INFO     | intersect: -4706126754.567325
[2025-12-03 17:39:56] 2025-12-03 16:38:52,522 | INFO     | chi2: 18.077440367699076
[2025-12-03 17:39:56] 2025-12-03 16:38:52,522 | INFO     | current chi2=18.077440367699076 (change=19.16129294961558 %)
[2025-12-03 17:39:56] 2025-12-03 16:38:52,522 | INFO     | left removable region: 10
[2025-12-03 17:39:56] 2025-12-03 16:38:52,524 | INFO     | sum of square deviations: 747760947367.4231
[2025-12-03 17:39:56] 2025-12-03 16:38:52,600 | INFO     | sum of deviations: 2117771610286.711
[2025-12-03 17:39:56] 2025-12-03 16:38:52,601 | INFO     | mean x: 1764738549.1297538
[2025-12-03 17:39:56] 2025-12-03 16:38:52,601 | INFO     | mean y: 2865088.967188665
[2025-12-03 17:39:56] 2025-12-03 16:38:52,601 | INFO     | intersect: -4995140238.916256
[2025-12-03 17:39:56] 2025-12-03 16:38:52,603 | INFO     | chi2: 10.985839595922492
[2025-12-03 17:39:56] 2025-12-03 16:38:52,603 | INFO     | current memory leak: 2.83 B/s (using 1341 data points, chi2=10.99)
[2025-12-03 17:39:56] 2025-12-03 16:38:52,604 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-12-03 17:39:56] 2025-12-03 16:38:52,604 | INFO     | ..............................
[2025-12-03 17:39:56] 2025-12-03 16:38:52,604 | INFO     | . Timing measurements:
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | . get job = 0 s
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | . initial setup = 7 s
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | . payload setup = 164 s
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | . stage-in = 0 s
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | . payload execution = 82906 s
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | . stage-out = 4 s
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | . log creation = 2 s
[2025-12-03 17:39:56] 2025-12-03 16:38:52,605 | INFO     | ..............................
[2025-12-03 17:39:56] 2025-12-03 16:38:52,682 | INFO     | time since job start (83371s) is within the limit (172800.0s)
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | 
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | job summary report
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | --------------------------------------------------
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | PanDA job id: 6893871912
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | task id: 47523449
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | errors: (none)
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 17:39:56] 2025-12-03 16:38:53,020 | INFO     | pilot state: finished 
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | transexitcode: 0
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | exeerrorcode: 0
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | exeerrordiag: 
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | exitcode: 0
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | exitmsg: OK
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | cpuconsumptiontime: 309275 s
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | nevents: 1000
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | neventsw: 0
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | pid: 7553
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | pgrp: 7553
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | corecount: 8
[2025-12-03 17:39:56] 2025-12-03 16:38:53,021 | INFO     | event service: False
[2025-12-03 17:39:56] 2025-12-03 16:38:53,022 | INFO     | sizes: {0: 2283486, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 97: 2285321, 99
[2025-12-03 17:39:56] 2025-12-03 16:38:53,022 | INFO     | --------------------------------------------------
[2025-12-03 17:39:56] 2025-12-03 16:38:53,022 | INFO     | 
[2025-12-03 17:39:56] 2025-12-03 16:38:53,022 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-12-03 17:39:56] 2025-12-03 16:38:53,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,588 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | job 6893871912 has completed (purged errors)
[2025-12-03 17:39:56] 2025-12-03 16:38:53,590 | INFO     | overall cleanup function is called
[2025-12-03 17:39:56] 2025-12-03 16:38:54,610 | INFO     | --- collectZombieJob: --- 10, [7553]
[2025-12-03 17:39:56] 2025-12-03 16:38:54,610 | INFO     | zombie collector waiting for pid 7553
[2025-12-03 17:39:56] 2025-12-03 16:38:54,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 17:39:56] 2025-12-03 16:38:54,610 | INFO     | collected zombie processes
[2025-12-03 17:39:56] 2025-12-03 16:38:54,610 | INFO     | will attempt to kill all subprocesses of pid=7553
[2025-12-03 17:39:56] 2025-12-03 16:38:54,732 | INFO     | process IDs to be killed: [7553] (in reverse order)
[2025-12-03 17:39:56] 2025-12-03 16:38:55,508 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 17:39:56] 2025-12-03 16:38:55,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 17:39:56] 2025-12-03 16:38:55,511 | INFO     | did not find any defunct processes belonging to 7553
[2025-12-03 17:39:56] 2025-12-03 16:38:55,514 | INFO     | did not find any defunct processes belonging to 7553
[2025-12-03 17:39:56] 2025-12-03 16:38:55,575 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 17:39:56] 2025-12-03 16:38:55,575 | INFO     | ready for new job
[2025-12-03 17:39:56] 2025-12-03 16:38:55,575 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 17:39:56] 2025-12-03 16:38:55,580 | INFO     | ***************************************
[2025-12-03 17:39:56] 2025-12-03 16:38:55,580 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 17:39:56] 2025-12-03 16:38:55,580 | INFO     | ***************************************
[2025-12-03 17:39:56] 2025-12-03 16:38:55,580 | INFO     | 
[2025-12-03 17:39:56] 2025-12-03 16:38:55,581 | INFO     | pilot is running in a VM
[2025-12-03 17:39:56] 2025-12-03 16:38:55,581 | INFO     | architecture information:
[2025-12-03 17:39:56] 2025-12-03 16:38:55,595 | INFO     | executing command: cat /etc/os-release
[2025-12-03 17:39:56] 2025-12-03 16:38:55,884 | INFO     | cat /etc/os-release:
[2025-12-03 17:39:56] NAME="CentOS Linux"
[2025-12-03 17:39:56] VERSION="7 (Core)"
[2025-12-03 17:39:56] ID="centos"
[2025-12-03 17:39:56] ID_LIKE="rhel fedora"
[2025-12-03 17:39:56] VERSION_ID="7"
[2025-12-03 17:39:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 17:39:56] ANSI_COLOR="0;31"
[2025-12-03 17:39:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 17:39:56] HOME_URL="https://www.centos.org/"
[2025-12-03 17:39:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 17:39:56] 
[2025-12-03 17:39:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 17:39:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 17:39:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 17:39:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 17:39:56] 
[2025-12-03 17:39:56] 2025-12-03 16:38:55,885 | INFO     | ***************************************
[2025-12-03 17:39:56] 2025-12-03 16:38:56,388 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-12-03 17:39:56] 2025-12-03 16:38:56,615 | INFO     | sufficient remaining disk space (496089694208 B)
[2025-12-03 17:39:56] 2025-12-03 16:38:56,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 17:39:56] 2025-12-03 16:38:56,616 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 17:39:56] 2025-12-03 16:38:56,616 | INFO     | update_server=False
[2025-12-03 17:39:56] 2025-12-03 16:38:56,616 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 17:39:56] 2025-12-03 16:38:56,617 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 17:39:56] 2025-12-03 16:38:56,866 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 17:39:56] 2025-12-03 16:38:56,866 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 17:39:56] 2025-12-03 16:38:56,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:39:56] 2025-12-03 16:38:56,866 | INFO     | will abort loop
[2025-12-03 17:39:56] 2025-12-03 16:38:56,929 | INFO     | all data control threads have been joined
[2025-12-03 17:39:56] 2025-12-03 16:38:57,024 | INFO     | all payload control threads have been joined
[2025-12-03 17:39:56] 2025-12-03 16:38:57,384 | INFO     | all job control threads have been joined
[2025-12-03 17:39:56] 2025-12-03 16:38:57,622 | INFO     | [job] retrieve thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:57,642 | INFO     | [payload] validate_post thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:57,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 17:39:56] 2025-12-03 16:38:57,736 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:57,758 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:39:56] 2025-12-03 16:38:57,872 | INFO     | [job] job monitor thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:57,935 | INFO     | [data] control thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,014 | INFO     | [payload] failed_post thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,030 | INFO     | [payload] control thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,390 | INFO     | [job] control thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,432 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,490 | INFO     | [data] copytool_in thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,573 | INFO     | [job] validate thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,624 | INFO     | [data] copytool_out thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,764 | INFO     | [job] queue monitor thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:58,895 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:38:59,115 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:39:01,730 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 17:39:56] 2025-12-03 16:39:25,830 | INFO     | PID=941 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-12-03 17:39:56] 2025-12-03 16:39:25,830 | INFO     | .. there are 9 such processes running
[2025-12-03 17:39:56] 2025-12-03 16:39:25,831 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 17:39:56] 2025-12-03 16:39:25,831 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 17:39:56] 2025-12-03 16:39:25,832 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 17:39:56] 2025-12-03 16:39:46,382 | INFO     | [monitor] cgroup control has ended
[2025-12-03 17:39:56] 2025-12-03 16:39:47,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643083327296)>', '<ExcThread(monitor, started 139642179405568)>']
[2025-12-03 17:39:56] 2025-12-03 16:39:47,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 17:39:56] 2025-12-03 16:39:47,962 | INFO     | [monitor] control thread has ended
[2025-12-03 17:39:56] 2025-12-03 16:39:52,329 | INFO     | all workflow threads have been joined
[2025-12-03 17:39:56] 2025-12-03 16:39:52,329 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 17:39:56] 2025-12-03 16:39:52,329 | INFO     | traces error code: 0
[2025-12-03 17:39:56] 2025-12-03 16:39:52,329 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 17:39:56] 2025-12-03 16:39:52,619 [wrapper] ==== pilot stdout END ====
[2025-12-03 17:39:56] 2025-12-03 16:39:52,720 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 17:39:56] 2025-12-03 16:39:52,810 [wrapper] pilotpid: 941
[2025-12-03 17:39:56] 2025-12-03 16:39:52,846 [wrapper] Pilot exit status: 0
[2025-12-03 17:39:56] 2025-12-03 16:39:53,206 [wrapper] pandaids: 6893871912
[2025-12-03 17:39:56] 2025-12-03 16:39:53,460 [wrapper] cleanup supervisor_pilot 10891 942
[2025-12-03 17:39:56] 2025-12-03 16:39:53,481 [wrapper] Test setup, not cleaning
[2025-12-03 17:39:56] 2025-12-03 16:39:53,486 [wrapper] apfmon messages muted
[2025-12-03 17:39:56] 2025-12-03 16:39:53,495 [wrapper] ==== wrapper stdout END ====
[2025-12-03 17:39:56] 2025-12-03 16:39:53,565 [wrapper] ==== wrapper stderr END ====
[2025-12-03 17:39:56]  *** Error codes and diagnostics ***
[2025-12-03 17:39:56]     "exeErrorCode": 0,
[2025-12-03 17:39:56]     "exeErrorDiag": "",
[2025-12-03 17:39:56]     "pilotErrorCode": 0,
[2025-12-03 17:39:56]     "pilotErrorDiag": "",
[2025-12-03 17:39:56]  *** Listing of results directory ***
[2025-12-03 17:39:56] total 1312196
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-12-03 17:39:56] -rwx------. 1 boinc boinc     36292 Nov 20 16:13 runpilot2-wrapper.sh
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc      5112 Nov 20 16:13 queuedata.json
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc       100 Dec  2 18:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 17:39:56] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 18:25 run_atlas
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc       105 Dec  2 18:25 job.xml
[2025-12-03 17:39:56] -rw-r--r--. 2 boinc boinc 408433139 Dec  2 18:25 EVNT.47493127._000672.pool.root.1
[2025-12-03 17:39:56] drwxrwx--x. 2 boinc boinc        68 Dec  2 18:25 shared
[2025-12-03 17:39:56] -rw-r--r--. 2 boinc boinc    590096 Dec  2 18:25 input.tar.gz
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc      6392 Dec  2 18:25 init_data.xml
[2025-12-03 17:39:56] -rw-r--r--. 2 boinc boinc     15847 Dec  2 18:25 start_atlas.sh
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc         0 Dec  2 18:25 boinc_lockfile
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc      2785 Dec  2 18:25 pandaJob.out
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc    988858 Dec  2 18:29 agis_schedconf.cvmfs.json
[2025-12-03 17:39:56] drwx------. 5 boinc boinc      4096 Dec  2 18:29 pilot3
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc       533 Dec  3 17:13 boinc_task_state.xml
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc 904257300 Dec  3 17:35 HITS.47523449._006712.pool.root.1
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc      1033 Dec  3 17:37 memory_monitor_summary.json
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc   1516240 Dec  3 17:37 agis_ddmendpoints.agis.ALL.json
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc   2447478 Dec  3 17:37 log.47523449._006712.job.log.tgz.1
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc      8624 Dec  3 17:38 heartbeat.json
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc        95 Dec  3 17:39 pilot_heartbeat.json
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc      8192 Dec  3 17:39 boinc_mmap_file
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc        29 Dec  3 17:39 wrapper_checkpoint.txt
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc      5069 Dec  3 17:39 pilotlog.txt
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc  11098451 Dec  3 17:39 log.47523449._006712.job.log.1
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc       353 Dec  3 17:39 output.list
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc       620 Dec  3 17:39 runtime_log
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc  13568000 Dec  3 17:39 result.tar.gz
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc      8833 Dec  3 17:39 runtime_log.err
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc       662 Dec  3 17:39 5zqMDmTWLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzBIKDmnAYq4m.diag
[2025-12-03 17:39:56] -rw-r--r--. 1 boinc boinc     21404 Dec  3 17:39 stderr.txt
[2025-12-03 17:39:56] HITS file was successfully produced:
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc 904257300 Dec  3 17:35 shared/HITS.pool.root.1
[2025-12-03 17:39:56]  *** Contents of shared directory: ***
[2025-12-03 17:39:56] total 1295776
[2025-12-03 17:39:56] -rw-r--r--. 2 boinc boinc 408433139 Dec  2 18:25 ATLAS.root_0
[2025-12-03 17:39:56] -rw-r--r--. 2 boinc boinc    590096 Dec  2 18:25 input.tar.gz
[2025-12-03 17:39:56] -rw-r--r--. 2 boinc boinc     15847 Dec  2 18:25 start_atlas.sh
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc 904257300 Dec  3 17:35 HITS.pool.root.1
[2025-12-03 17:39:56] -rw-------. 1 boinc boinc  13568000 Dec  3 17:39 result.tar.gz
17:39:57 (29562): run_atlas exited; CPU time 309845.845600
17:39:57 (29562): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN