Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:32:16 (9844): wrapper (7.7.26015): starting
01:32:16 (9844): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 01:32:16] Arguments: --nthreads 8
[2025-12-01 01:32:16] Threads: 8
[2025-12-01 01:32:16] Checking for CVMFS
[2025-12-01 01:32:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 01:32:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 01:32:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 01:32:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 01:32:17] 2.11.0.0 7771 72148 114996 153499 3 19 3966334 4096000 93 130560 3 6179270 99.480 6265020 609 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 01:32:17] CVMFS is ok
[2025-12-01 01:32:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 01:32:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 01:32:17] Further information can be found at the LHC@home message board.
[2025-12-01 01:32:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 01:32:17] Checking for apptainer binary...
[2025-12-01 01:32:17] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 01:32:17] apptainer is not installed, using version from CVMFS
[2025-12-01 01:32:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 01:32:17] WARNING: Environment variable TMPDIR already has value [/tmp/job_10937775/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node120
[2025-12-01 01:32:17] apptainer works
[2025-12-01 01:32:17] Set ATHENA_PROC_NUMBER=8
[2025-12-01 01:32:17] Set ATHENA_CORE_NUMBER=8
[2025-12-01 01:32:17] Starting ATLAS job with PandaID=6894268427
[2025-12-01 01:32:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10937775/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 05:58:53]  *** The last 200 lines of the pilot log: ***
[2025-12-01 05:58:53] 2025-12-01 04:58:08,641 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-01 05:58:53] 2025-12-01 04:58:08,641 | INFO     | log transfer has been attempted: DONE
[2025-12-01 05:58:53] 2025-12-01 04:58:08,641 | INFO     | job 6894268427 has finished - writing final server update
[2025-12-01 05:58:53] 2025-12-01 04:58:08,641 | INFO     | total number of processed events: 1000 (read)
[2025-12-01 05:58:53] 2025-12-01 04:58:08,642 | INFO     | executing command: lscpu
[2025-12-01 05:58:53] 2025-12-01 04:58:08,673 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-01 05:58:53] 2025-12-01 04:58:08,934 | INFO     | time since job start (15947s) is within the limit (172800.0s)
[2025-12-01 05:58:53] 2025-12-01 04:58:09,760 | INFO     | monitor loop #1165: job 0:6894268427 is in state 'finished'
[2025-12-01 05:58:53] 2025-12-01 04:58:09,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,466 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 05:58:53] 2025-12-01 04:58:10,471 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3035.732624999999
[2025-12-01 05:58:53] 2025-12-01 04:58:10,476 | INFO     | using path: /tmp/job_10937775/atlas/pilot/slots/0/PanDA_Pilot-6894268427/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,476 | INFO     | extracted standard info from prmon json
[2025-12-01 05:58:53] 2025-12-01 04:58:10,476 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 05:58:53] 2025-12-01 04:58:10,476 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 05:58:53] 2025-12-01 04:58:10,479 | INFO     | fitting pss+swap vs Time
[2025-12-01 05:58:53] 2025-12-01 04:58:10,479 | INFO     | sum of square deviations: 5513070810.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,480 | INFO     | sum of deviations: 423188916664.00006
[2025-12-01 05:58:53] 2025-12-01 04:58:10,480 | INFO     | mean x: 1764557089.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,480 | INFO     | mean y: 3079292.8812260535
[2025-12-01 05:58:53] 2025-12-01 04:58:10,480 | INFO     | intersect: -135446115651.46803
[2025-12-01 05:58:53] 2025-12-01 04:58:10,480 | INFO     | chi2: 3.9350127578829497
[2025-12-01 05:58:53] 2025-12-01 04:58:10,480 | INFO     | sum of square deviations: 5202255680.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,481 | INFO     | sum of deviations: 435074060497.5
[2025-12-01 05:58:53] 2025-12-01 04:58:10,481 | INFO     | mean x: 1764556936.5
[2025-12-01 05:58:53] 2025-12-01 04:58:10,481 | INFO     | mean y: 3084838.82421875
[2025-12-01 05:58:53] 2025-12-01 04:58:10,481 | INFO     | intersect: -147570006251.93976
[2025-12-01 05:58:53] 2025-12-01 04:58:10,482 | INFO     | chi2: 2.971657128756134
[2025-12-01 05:58:53] 2025-12-01 04:58:10,482 | INFO     | current chi2=2.971657128756134 (change=24.48163928304782 %)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,482 | INFO     | right removable region: 255
[2025-12-01 05:58:53] 2025-12-01 04:58:10,482 | INFO     | sum of square deviations: 5202255680.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,483 | INFO     | sum of deviations: 368225814451.5
[2025-12-01 05:58:53] 2025-12-01 04:58:10,483 | INFO     | mean x: 1764557241.5
[2025-12-01 05:58:53] 2025-12-01 04:58:10,483 | INFO     | mean y: 3106076.51953125
[2025-12-01 05:58:53] 2025-12-01 04:58:10,483 | INFO     | intersect: -124895700780.59166
[2025-12-01 05:58:53] 2025-12-01 04:58:10,483 | INFO     | chi2: 2.6399439204329984
[2025-12-01 05:58:53] 2025-12-01 04:58:10,483 | INFO     | current chi2=2.6399439204329984 (change=32.91142664926715 %)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,483 | INFO     | sum of square deviations: 4903347750.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,484 | INFO     | sum of deviations: 349921886874.9999
[2025-12-01 05:58:53] 2025-12-01 04:58:10,484 | INFO     | mean x: 1764557394.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,484 | INFO     | mean y: 3115410.868525896
[2025-12-01 05:58:53] 2025-12-01 04:58:10,484 | INFO     | intersect: -125922534632.5559
[2025-12-01 05:58:53] 2025-12-01 04:58:10,484 | INFO     | chi2: 2.636260381267474
[2025-12-01 05:58:53] 2025-12-01 04:58:10,484 | INFO     | current chi2=2.636260381267474 (change=0.1395309626471218 %)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,485 | INFO     | left removable region: 20
[2025-12-01 05:58:53] 2025-12-01 04:58:10,485 | INFO     | sum of square deviations: 4024149870.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,485 | INFO     | sum of deviations: 319712291648.99994
[2025-12-01 05:58:53] 2025-12-01 04:58:10,485 | INFO     | mean x: 1764557516.0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | mean y: 3133837.455319149
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | intersect: -140188147653.4666
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | chi2: 1.570989064458784
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | current memory leak: 79.45 B/s (using 235 data points, chi2=1.57)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | could have reported an average CPU frequency of 3031 MHz (12 samples)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | ..............................
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . Timing measurements:
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . get job = 0 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . initial setup = 1 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . payload setup = 2 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . stage-in = 0 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . payload execution = 15921 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . stage-out = 1 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | . log creation = 0 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,486 | INFO     | ..............................
[2025-12-01 05:58:53] 2025-12-01 04:58:10,633 | INFO     | 
[2025-12-01 05:58:53] 2025-12-01 04:58:10,633 | INFO     | job summary report
[2025-12-01 05:58:53] 2025-12-01 04:58:10,633 | INFO     | --------------------------------------------------
[2025-12-01 05:58:53] 2025-12-01 04:58:10,633 | INFO     | PanDA job id: 6894268427
[2025-12-01 05:58:53] 2025-12-01 04:58:10,633 | INFO     | task id: 47533967
[2025-12-01 05:58:53] 2025-12-01 04:58:10,633 | INFO     | errors: (none)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | pilot state: finished 
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | transexitcode: 0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | exeerrorcode: 0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | exeerrordiag: 
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | exitcode: 0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | exitmsg: OK
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | cpuconsumptiontime: 120142 s
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | nevents: 1000
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | neventsw: 0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | pid: 31545
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | pgrp: 31545
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | corecount: 8
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | event service: False
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | sizes: {0: 2284434, 2: 2284696, 11: 2284724, 15928: 2317054, 15929: 2326078, 15930: 2326134, 15936: 2326508}
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | --------------------------------------------------
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | 
[2025-12-01 05:58:53] 2025-12-01 04:58:10,634 | INFO     | executing command: ls -lF /tmp/job_10937775/atlas/pilot/slots/0
[2025-12-01 05:58:53] 2025-12-01 04:58:10,642 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,642 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,642 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,642 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | job 6894268427 has completed (purged errors)
[2025-12-01 05:58:53] 2025-12-01 04:58:10,643 | INFO     | overall cleanup function is called
[2025-12-01 05:58:53] 2025-12-01 04:58:11,648 | INFO     | --- collectZombieJob: --- 10, [31545]
[2025-12-01 05:58:53] 2025-12-01 04:58:11,648 | INFO     | zombie collector waiting for pid 31545
[2025-12-01 05:58:53] 2025-12-01 04:58:11,648 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 05:58:53] 2025-12-01 04:58:11,648 | INFO     | collected zombie processes
[2025-12-01 05:58:53] 2025-12-01 04:58:11,648 | INFO     | will attempt to kill all subprocesses of pid=31545
[2025-12-01 05:58:53] 2025-12-01 04:58:11,774 | INFO     | process IDs to be killed: [31545] (in reverse order)
[2025-12-01 05:58:53] 2025-12-01 04:58:11,817 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 05:58:53] 2025-12-01 04:58:11,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 05:58:53] 2025-12-01 04:58:11,822 | INFO     | did not find any defunct processes belonging to 31545
[2025-12-01 05:58:53] 2025-12-01 04:58:11,825 | INFO     | did not find any defunct processes belonging to 31545
[2025-12-01 05:58:53] 2025-12-01 04:58:11,826 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 05:58:53] 2025-12-01 04:58:11,826 | INFO     | ready for new job
[2025-12-01 05:58:53] 2025-12-01 04:58:11,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 05:58:53] 2025-12-01 04:58:11,827 | INFO     | ***************************************
[2025-12-01 05:58:53] 2025-12-01 04:58:11,827 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 05:58:53] 2025-12-01 04:58:11,827 | INFO     | ***************************************
[2025-12-01 05:58:53] 2025-12-01 04:58:11,827 | INFO     | 
[2025-12-01 05:58:53] 2025-12-01 04:58:11,841 | INFO     | architecture information:
[2025-12-01 05:58:53] 2025-12-01 04:58:11,842 | INFO     | executing command: cat /etc/os-release
[2025-12-01 05:58:53] 2025-12-01 04:58:11,847 | INFO     | cat /etc/os-release:
[2025-12-01 05:58:53] NAME="CentOS Linux"
[2025-12-01 05:58:53] VERSION="7 (Core)"
[2025-12-01 05:58:53] ID="centos"
[2025-12-01 05:58:53] ID_LIKE="rhel fedora"
[2025-12-01 05:58:53] VERSION_ID="7"
[2025-12-01 05:58:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 05:58:53] ANSI_COLOR="0;31"
[2025-12-01 05:58:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 05:58:53] HOME_URL="https://www.centos.org/"
[2025-12-01 05:58:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 05:58:53] 
[2025-12-01 05:58:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 05:58:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 05:58:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 05:58:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 05:58:53] 
[2025-12-01 05:58:53] 2025-12-01 04:58:11,847 | INFO     | ***************************************
[2025-12-01 05:58:53] 2025-12-01 04:58:12,349 | INFO     | executing command: df -mP /tmp/job_10937775/atlas/pilot/slots/0
[2025-12-01 05:58:53] 2025-12-01 04:58:12,354 | INFO     | sufficient remaining disk space (213788917760 B)
[2025-12-01 05:58:53] 2025-12-01 04:58:12,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 05:58:53] 2025-12-01 04:58:12,354 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 05:58:53] 2025-12-01 04:58:12,354 | INFO     | update_server=False
[2025-12-01 05:58:53] 2025-12-01 04:58:12,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 05:58:53] 2025-12-01 04:58:12,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:58:53] 2025-12-01 04:58:12,898 | INFO     | all data control threads have been joined
[2025-12-01 05:58:53] 2025-12-01 04:58:13,246 | INFO     | all job control threads have been joined
[2025-12-01 05:58:53] 2025-12-01 04:58:13,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:58:53] 2025-12-01 04:58:13,268 | INFO     | aborting loop
[2025-12-01 05:58:53] 2025-12-01 04:58:13,359 | INFO     | [job] retrieve thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:13,360 | INFO     | [job] queue monitor thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:13,382 | INFO     | all payload control threads have been joined
[2025-12-01 05:58:53] 2025-12-01 04:58:13,508 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:13,571 | INFO     | [payload] failed_post thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:13,582 | INFO     | [data] copytool_in thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:13,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 05:58:53] 2025-12-01 04:58:13,903 | INFO     | [data] control thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:14,251 | INFO     | [job] control thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:14,258 | INFO     | [payload] validate_post thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:14,273 | INFO     | [job] job monitor thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:14,388 | INFO     | [payload] control thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:14,476 | INFO     | [job] validate thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:14,550 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:14,778 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:15,080 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 05:58:53] 2025-12-01 04:58:15,728 | INFO     | [data] copytool_out thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:19,086 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:22,726 | INFO     | job.realtimelogging is not enabled
[2025-12-01 05:58:53] 2025-12-01 04:58:23,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 05:58:53] 2025-12-01 04:58:42,151 | INFO     | PID=16224 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 05:58:53] 2025-12-01 04:58:42,151 | INFO     | .. there are 8 such processes running
[2025-12-01 05:58:53] 2025-12-01 04:58:42,151 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 05:58:53] 2025-12-01 04:58:42,151 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 05:58:53] 2025-12-01 04:58:42,151 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 05:58:53] 2025-12-01 04:58:47,931 | INFO     | [monitor] cgroup control has ended
[2025-12-01 05:58:53] 2025-12-01 04:58:48,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-01 05:58:53] 2025-12-01 04:58:49,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 05:58:53] 2025-12-01 04:58:49,186 | INFO     | [monitor] control thread has ended
[2025-12-01 05:58:53] 2025-12-01 04:58:53,254 | INFO     | all workflow threads have been joined
[2025-12-01 05:58:53] 2025-12-01 04:58:53,254 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 05:58:53] 2025-12-01 04:58:53,254 | INFO     | traces error code: 0
[2025-12-01 05:58:53] 2025-12-01 04:58:53,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 05:58:53] 2025-12-01 04:58:53,307 [wrapper] ==== pilot stdout END ====
[2025-12-01 05:58:53] 2025-12-01 04:58:53,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 05:58:53] 2025-12-01 04:58:53,309 [wrapper] pilotpid: 16224
[2025-12-01 05:58:53] 2025-12-01 04:58:53,310 [wrapper] Pilot exit status: 0
[2025-12-01 05:58:53] 2025-12-01 04:58:53,314 [wrapper] pandaids: 6894268427
[2025-12-01 05:58:53] 2025-12-01 04:58:53,341 [wrapper] cleanup supervisor_pilot 14107 16225
[2025-12-01 05:58:53] 2025-12-01 04:58:53,342 [wrapper] Test setup, not cleaning
[2025-12-01 05:58:53] 2025-12-01 04:58:53,343 [wrapper] apfmon messages muted
[2025-12-01 05:58:53] 2025-12-01 04:58:53,344 [wrapper] ==== wrapper stdout END ====
[2025-12-01 05:58:53] 2025-12-01 04:58:53,345 [wrapper] ==== wrapper stderr END ====
[2025-12-01 05:58:53]  *** Error codes and diagnostics ***
[2025-12-01 05:58:53]     "exeErrorCode": 0,
[2025-12-01 05:58:53]     "exeErrorDiag": "",
[2025-12-01 05:58:53]     "pilotErrorCode": 0,
[2025-12-01 05:58:53]     "pilotErrorDiag": "",
[2025-12-01 05:58:53]  *** Listing of results directory ***
[2025-12-01 05:58:53] total 1294136
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user    576529 Nov 21 06:09 pilot3.tar.gz
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      5112 Nov 21 06:43 queuedata.json
[2025-12-01 05:58:53] -rwx------ 1 mf493845 unix-user     36292 Nov 21 06:44 runpilot2-wrapper.sh
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user       100 Nov 30 23:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 05:58:53] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 23:48 run_atlas
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user       105 Nov 30 23:48 job.xml
[2025-12-01 05:58:53] -rw-r--r-- 2 mf493845 unix-user 407855003 Dec  1 01:32 EVNT.47493127._002265.pool.root.1
[2025-12-01 05:58:53] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 01:32 start_atlas.sh
[2025-12-01 05:58:53] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 01:32 shared
[2025-12-01 05:58:53] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  1 01:32 input.tar.gz
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      6392 Dec  1 01:32 init_data.xml
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user         0 Dec  1 01:32 boinc_setup_complete
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      8192 Dec  1 01:32 boinc_mmap_file
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user         0 Dec  1 01:32 boinc_lockfile
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      2782 Dec  1 01:32 pandaJob.out
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user    993253 Dec  1 01:32 agis_schedconf.cvmfs.json
[2025-12-01 05:58:53] drwx------ 5 mf493845 unix-user       440 Dec  1 01:32 pilot3
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user 905711705 Dec  1 05:57 HITS.47533967._002361.pool.root.1
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      1023 Dec  1 05:57 memory_monitor_summary.json
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user   1516240 Dec  1 05:58 agis_ddmendpoints.agis.ALL.json
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user   1558179 Dec  1 05:58 log.47533967._002361.job.log.tgz.1
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      8596 Dec  1 05:58 heartbeat.json
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user        95 Dec  1 05:58 pilot_heartbeat.json
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      4907 Dec  1 05:58 pilotlog.txt
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user   2309960 Dec  1 05:58 log.47533967._002361.job.log.1
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user       353 Dec  1 05:58 output.list
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user       620 Dec  1 05:58 runtime_log
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user   3891200 Dec  1 05:58 result.tar.gz
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user       650 Dec  1 05:58 X35NDmK7Yg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4NHKDmu31SOm.diag
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user      9221 Dec  1 05:58 runtime_log.err
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user     21906 Dec  1 05:58 stderr.txt
[2025-12-01 05:58:53] HITS file was successfully produced:
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user 905711705 Dec  1 05:57 shared/HITS.pool.root.1
[2025-12-01 05:58:53]  *** Contents of shared directory: ***
[2025-12-01 05:58:53] total 1287180
[2025-12-01 05:58:53] -rw-r--r-- 2 mf493845 unix-user 407855003 Dec  1 01:32 ATLAS.root_0
[2025-12-01 05:58:53] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 01:32 start_atlas.sh
[2025-12-01 05:58:53] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  1 01:32 input.tar.gz
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user 905711705 Dec  1 05:57 HITS.pool.root.1
[2025-12-01 05:58:53] -rw------- 1 mf493845 unix-user   3891200 Dec  1 05:58 result.tar.gz
05:58:54 (9844): run_atlas exited; CPU time 120357.146840
05:58:54 (9844): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN