Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:08:46 (927969): wrapper (7.7.26015): starting
09:08:46 (927969): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 09:08:46] Arguments: --nthreads 4
[2025-12-03 09:08:46] Threads: 4
[2025-12-03 09:08:46] Checking for CVMFS
[2025-12-03 09:08:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 09:08:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 09:08:47] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 09:08:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 09:08:47] 2.9.2.0 3303 6119 92120 153585 3 79 29171262 36864000 453 130560 0 2673197 99.984 214934 737 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-03 09:08:47] CVMFS is ok
[2025-12-03 09:08:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 09:08:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 09:08:47] Further information can be found at the LHC@home message board.
[2025-12-03 09:08:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 09:08:47] Checking for apptainer binary...
[2025-12-03 09:08:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 09:08:47] Running /usr/bin/apptainer --version
[2025-12-03 09:08:47] apptainer version 1.4.1-1.1
[2025-12-03 09:08:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 09:08:47] thA373a
[2025-12-03 09:08:47] apptainer works
[2025-12-03 09:08:47] Set ATHENA_PROC_NUMBER=4
[2025-12-03 09:08:47] Set ATHENA_CORE_NUMBER=4
[2025-12-03 09:08:47] Starting ATLAS job with PandaID=6894261643
[2025-12-03 09:08:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 16:00:44]  *** The last 200 lines of the pilot log: ***
[2025-12-03 16:00:44] 2025-12-03 15:00:11,482 | INFO     | overall cleanup function is called
[2025-12-03 16:00:44] 2025-12-03 15:00:12,492 | INFO     | --- collectZombieJob: --- 10, [938337]
[2025-12-03 16:00:44] 2025-12-03 15:00:12,492 | INFO     | zombie collector waiting for pid 938337
[2025-12-03 16:00:44] 2025-12-03 15:00:12,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 16:00:44] 2025-12-03 15:00:12,492 | INFO     | collected zombie processes
[2025-12-03 16:00:44] 2025-12-03 15:00:12,492 | INFO     | will attempt to kill all subprocesses of pid=938337
[2025-12-03 16:00:44] 2025-12-03 15:00:12,538 | INFO     | process IDs to be killed: [938337] (in reverse order)
[2025-12-03 16:00:44] 2025-12-03 15:00:12,573 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 16:00:44] 2025-12-03 15:00:12,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 16:00:44] 2025-12-03 15:00:12,575 | INFO     | did not find any defunct processes belonging to 938337
[2025-12-03 16:00:44] 2025-12-03 15:00:12,576 | INFO     | did not find any defunct processes belonging to 938337
[2025-12-03 16:00:44] 2025-12-03 15:00:12,577 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 16:00:44] 2025-12-03 15:00:12,577 | INFO     | ready for new job
[2025-12-03 16:00:44] 2025-12-03 15:00:12,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 16:00:44] 2025-12-03 15:00:12,578 | INFO     | ***************************************
[2025-12-03 16:00:44] 2025-12-03 15:00:12,578 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 16:00:44] 2025-12-03 15:00:12,578 | INFO     | ***************************************
[2025-12-03 16:00:44] 2025-12-03 15:00:12,578 | INFO     | 
[2025-12-03 16:00:44] 2025-12-03 15:00:12,579 | INFO     | architecture information:
[2025-12-03 16:00:44] 2025-12-03 15:00:12,579 | INFO     | executing command: cat /etc/os-release
[2025-12-03 16:00:44] 2025-12-03 15:00:12,593 | INFO     | cat /etc/os-release:
[2025-12-03 16:00:44] NAME="CentOS Linux"
[2025-12-03 16:00:44] VERSION="7 (Core)"
[2025-12-03 16:00:44] ID="centos"
[2025-12-03 16:00:44] ID_LIKE="rhel fedora"
[2025-12-03 16:00:44] VERSION_ID="7"
[2025-12-03 16:00:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 16:00:44] ANSI_COLOR="0;31"
[2025-12-03 16:00:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 16:00:44] HOME_URL="https://www.centos.org/"
[2025-12-03 16:00:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 16:00:44] 
[2025-12-03 16:00:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 16:00:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 16:00:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 16:00:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 16:00:44] 
[2025-12-03 16:00:44] 2025-12-03 15:00:12,593 | INFO     | ***************************************
[2025-12-03 16:00:44] 2025-12-03 15:00:13,096 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 16:00:44] 2025-12-03 15:00:13,114 | INFO     | sufficient remaining disk space (328730673152 B)
[2025-12-03 16:00:44] 2025-12-03 15:00:13,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 16:00:44] 2025-12-03 15:00:13,114 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 16:00:44] 2025-12-03 15:00:13,114 | INFO     | update_server=False
[2025-12-03 16:00:44] 2025-12-03 15:00:13,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 16:00:44] 2025-12-03 15:00:13,115 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 16:00:44] 2025-12-03 15:00:13,115 | INFO     | aborting loop
[2025-12-03 16:00:44] 2025-12-03 15:00:13,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 16:00:44] 2025-12-03 15:00:13,307 | INFO     | all data control threads have been joined
[2025-12-03 16:00:44] 2025-12-03 15:00:13,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 16:00:44] 2025-12-03 15:00:13,805 | INFO     | all payload control threads have been joined
[2025-12-03 16:00:44] 2025-12-03 15:00:14,120 | INFO     | [job] retrieve thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:14,121 | INFO     | [job] job monitor thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:14,121 | INFO     | [job] queue monitor thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:14,312 | INFO     | [data] control thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:14,326 | INFO     | [payload] validate_post thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:14,730 | INFO     | [data] copytool_in thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:14,811 | INFO     | [payload] control thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:14,813 | INFO     | all job control threads have been joined
[2025-12-03 16:00:44] 2025-12-03 15:00:14,853 | INFO     | [payload] failed_post thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:15,086 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:15,385 | INFO     | [job] validate thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:15,472 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:15,519 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:15,779 | INFO     | [data] copytool_out thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:15,819 | INFO     | [job] control thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:16,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 16:00:44] 2025-12-03 15:00:20,254 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:24,058 | INFO     | job.realtimelogging is not enabled
[2025-12-03 16:00:44] 2025-12-03 15:00:25,064 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 16:00:44] 2025-12-03 15:00:26,780 | INFO     | [monitor] cgroup control has ended
[2025-12-03 16:00:44] 2025-12-03 15:00:28,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140684427360064)>', '<ExcThread(monitor, started 140683759298304)>']
[2025-12-03 16:00:44] 2025-12-03 15:00:33,690 | INFO     | all workflow threads have been joined
[2025-12-03 16:00:44] 2025-12-03 15:00:33,690 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 16:00:44] 2025-12-03 15:00:33,691 | INFO     | traces error code: 0
[2025-12-03 16:00:44] 2025-12-03 15:00:33,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 16:00:44] 2025-12-03 15:00:44,017 | INFO     | PID=931764 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 16:00:44] 2025-12-03 15:00:44,017 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 16:00:44] 2025-12-03 15:00:44,017 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 16:00:44] 2025-12-03 15:00:44,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 16:00:44] 2025-12-03 15:00:44,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 16:00:44] 2025-12-03 15:00:44,017 | INFO     | [monitor] control thread has ended
[2025-12-03 16:00:44] 2025-12-03 15:00:44,093 [wrapper] ==== pilot stdout END ====
[2025-12-03 16:00:44] 2025-12-03 15:00:44,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 16:00:44] 2025-12-03 15:00:44,102 [wrapper] pilotpid: 931764
[2025-12-03 16:00:44] 2025-12-03 15:00:44,107 [wrapper] Pilot exit status: 0
[2025-12-03 16:00:44] 2025-12-03 15:00:44,118 [wrapper] pandaids: 6894261643
[2025-12-03 16:00:44] 2025-12-03 15:00:44,141 [wrapper] cleanup supervisor_pilot  985603 931765
[2025-12-03 16:00:44] 2025-12-03 15:00:44,145 [wrapper] Test setup, not cleaning
[2025-12-03 16:00:44] 2025-12-03 15:00:44,149 [wrapper] apfmon messages muted
[2025-12-03 16:00:44] 2025-12-03 15:00:44,152 [wrapper] ==== wrapper stdout END ====
[2025-12-03 16:00:44] 2025-12-03 15:00:44,156 [wrapper] ==== wrapper stderr END ====
[2025-12-03 16:00:44]  *** Error codes and diagnostics ***
[2025-12-03 16:00:44]     "exeErrorCode": 0,
[2025-12-03 16:00:44]     "exeErrorDiag": "",
[2025-12-03 16:00:44]     "pilotErrorCode": 0,
[2025-12-03 16:00:44]     "pilotErrorDiag": "",
[2025-12-03 16:00:44]  *** Listing of results directory ***
[2025-12-03 16:00:44] total 1308760
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-12-03 16:00:44] -rwx------ 1 boinc boinc     36292 Nov 21 05:34 runpilot2-wrapper.sh
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc      5112 Nov 21 05:34 queuedata.json
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc       100 Dec  3 09:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 16:00:44] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 09:08 run_atlas
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc       105 Dec  3 09:08 job.xml
[2025-12-03 16:00:44] -rw-r--r-- 2 boinc boinc 409111598 Dec  3 09:08 EVNT.47493127._002190.pool.root.1
[2025-12-03 16:00:44] -rw-r--r-- 2 boinc boinc    590101 Dec  3 09:08 input.tar.gz
[2025-12-03 16:00:44] -rw-r--r-- 2 boinc boinc     15847 Dec  3 09:08 start_atlas.sh
[2025-12-03 16:00:44] drwxrwx--x 2 boinc boinc      4096 Dec  3 09:08 shared
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc         0 Dec  3 09:08 boinc_setup_complete
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc      6379 Dec  3 09:08 init_data.xml
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc         0 Dec  3 09:08 boinc_lockfile
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc      2786 Dec  3 09:08 pandaJob.out
[2025-12-03 16:00:44] -rw------- 1 boinc boinc    985779 Dec  3 09:08 agis_schedconf.cvmfs.json
[2025-12-03 16:00:44] drwx------ 5 boinc boinc      4096 Dec  3 09:08 pilot3
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc       532 Dec  3 15:55 boinc_task_state.xml
[2025-12-03 16:00:44] -rw------- 1 boinc boinc 917679541 Dec  3 15:59 HITS.47533967._001619.pool.root.1
[2025-12-03 16:00:44] -rw------- 1 boinc boinc      1027 Dec  3 15:59 memory_monitor_summary.json
[2025-12-03 16:00:44] -rw------- 1 boinc boinc   1516240 Dec  3 16:00 agis_ddmendpoints.agis.ALL.json
[2025-12-03 16:00:44] -rw------- 1 boinc boinc   1261197 Dec  3 16:00 log.47533967._001619.job.log.tgz.1
[2025-12-03 16:00:44] -rw------- 1 boinc boinc        95 Dec  3 16:00 pilot_heartbeat.json
[2025-12-03 16:00:44] -rw------- 1 boinc boinc      8575 Dec  3 16:00 heartbeat.json
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc      8192 Dec  3 16:00 boinc_mmap_file
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc        28 Dec  3 16:00 wrapper_checkpoint.txt
[2025-12-03 16:00:44] -rw------- 1 boinc boinc       746 Dec  3 16:00 pilotlog.txt
[2025-12-03 16:00:44] -rw------- 1 boinc boinc   3481726 Dec  3 16:00 log.47533967._001619.job.log.1
[2025-12-03 16:00:44] -rw------- 1 boinc boinc       353 Dec  3 16:00 output.list
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc       620 Dec  3 16:00 runtime_log
[2025-12-03 16:00:44] -rw------- 1 boinc boinc   4761600 Dec  3 16:00 result.tar.gz
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc      8903 Dec  3 16:00 runtime_log.err
[2025-12-03 16:00:44] -rw------- 1 boinc boinc       666 Dec  3 16:00 6v1NDmR2Xg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ1IKDmEh8lDm.diag
[2025-12-03 16:00:44] -rw-r--r-- 1 boinc boinc     11014 Dec  3 16:00 stderr.txt
[2025-12-03 16:00:44] HITS file was successfully produced:
[2025-12-03 16:00:44] -rw------- 1 boinc boinc 917679541 Dec  3 15:59 shared/HITS.pool.root.1
[2025-12-03 16:00:44]  *** Contents of shared directory: ***
[2025-12-03 16:00:44] total 1300952
[2025-12-03 16:00:44] -rw-r--r-- 2 boinc boinc 409111598 Dec  3 09:08 ATLAS.root_0
[2025-12-03 16:00:44] -rw-r--r-- 2 boinc boinc    590101 Dec  3 09:08 input.tar.gz
[2025-12-03 16:00:44] -rw-r--r-- 2 boinc boinc     15847 Dec  3 09:08 start_atlas.sh
[2025-12-03 16:00:44] -rw------- 1 boinc boinc 917679541 Dec  3 15:59 HITS.pool.root.1
[2025-12-03 16:00:44] -rw------- 1 boinc boinc   4761600 Dec  3 16:00 result.tar.gz
16:00:45 (927969): run_atlas exited; CPU time 96440.419059
16:00:45 (927969): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN