Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:09:41 (10762): wrapper (7.7.26015): starting
18:09:41 (10762): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:09:41] Arguments: --nthreads 8
[2025-12-02 18:09:41] Threads: 8
[2025-12-02 18:09:41] Checking for CVMFS
[2025-12-02 18:09:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:09:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:09:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:09:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:09:41] 2.11.2.0 2048 181097 140328 153562 0 289 23580522 25165824 1812 130560 10 60929828 99.874 34127031 2165 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 18:09:41] CVMFS is ok
[2025-12-02 18:09:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:09:41] Checking for apptainer binary...
[2025-12-02 18:09:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 18:09:41] Running /usr/bin/apptainer --version
[2025-12-02 18:09:41] apptainer version 1.3.2-1.el7
[2025-12-02 18:09:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:09:43] cg-vwn398.simple-grid.lan
[2025-12-02 18:09:43] apptainer works
[2025-12-02 18:09:43] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:09:43] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:09:43] Starting ATLAS job with PandaID=6895354726
[2025-12-02 18:09:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 17:47:38]  *** The last 200 lines of the pilot log: ***
[2025-12-03 17:47:38] 2025-12-03 16:46:35,292 | INFO     | fitting pss+swap vs Time
[2025-12-03 17:47:38] 2025-12-03 16:46:35,294 | INFO     | sum of square deviations: 834559752110.6052
[2025-12-03 17:47:38] 2025-12-03 16:46:35,348 | INFO     | sum of deviations: 2669574865580.644
[2025-12-03 17:47:38] 2025-12-03 16:46:35,348 | INFO     | mean x: 1764737848.1617541
[2025-12-03 17:47:38] 2025-12-03 16:46:35,348 | INFO     | mean y: 2859801.801581596
[2025-12-03 17:47:38] 2025-12-03 16:46:35,348 | INFO     | intersect: -5642152184.310974
[2025-12-03 17:47:38] 2025-12-03 16:46:35,350 | INFO     | chi2: 12.05942800320174
[2025-12-03 17:47:38] 2025-12-03 16:46:35,352 | INFO     | sum of square deviations: 825592941966.3335
[2025-12-03 17:47:38] 2025-12-03 16:46:35,419 | INFO     | sum of deviations: 3138689081765.999
[2025-12-03 17:47:38] 2025-12-03 16:46:35,419 | INFO     | mean x: 1764737695.665945
[2025-12-03 17:47:38] 2025-12-03 16:46:35,419 | INFO     | mean y: 2867779.3391053393
[2025-12-03 17:47:38] 2025-12-03 16:46:35,419 | INFO     | intersect: -6706204762.360822
[2025-12-03 17:47:38] 2025-12-03 16:46:35,421 | INFO     | chi2: 8.787107965204294
[2025-12-03 17:47:38] 2025-12-03 16:46:35,424 | INFO     | current chi2=8.787107965204294 (change=27.134952313896278 %)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,426 | INFO     | sum of square deviations: 816690598147.0115
[2025-12-03 17:47:38] 2025-12-03 16:46:35,494 | INFO     | sum of deviations: 3648727153508.647
[2025-12-03 17:47:38] 2025-12-03 16:46:35,494 | INFO     | mean x: 1764737543.1701665
[2025-12-03 17:47:38] 2025-12-03 16:46:35,494 | INFO     | mean y: 2876516.244026068
[2025-12-03 17:47:38] 2025-12-03 16:46:35,494 | INFO     | intersect: -7881438311.41613
[2025-12-03 17:47:38] 2025-12-03 16:46:35,496 | INFO     | chi2: 5.071906974444709
[2025-12-03 17:47:38] 2025-12-03 16:46:35,496 | INFO     | current chi2=5.071906974444709 (change=42.280133639773815 %)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,498 | INFO     | sum of square deviations: 807852488090.1401
[2025-12-03 17:47:38] 2025-12-03 16:46:35,552 | INFO     | sum of deviations: 3954092608689.585
[2025-12-03 17:47:38] 2025-12-03 16:46:35,553 | INFO     | mean x: 1764737390.6744187
[2025-12-03 17:47:38] 2025-12-03 16:46:35,553 | INFO     | mean y: 2881781.757994186
[2025-12-03 17:47:38] 2025-12-03 16:46:35,553 | INFO     | intersect: -8634753399.932833
[2025-12-03 17:47:38] 2025-12-03 16:46:35,555 | INFO     | chi2: 3.4057113338431
[2025-12-03 17:47:38] 2025-12-03 16:46:35,555 | INFO     | current chi2=3.4057113338431 (change=32.85146295065931 %)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,557 | INFO     | sum of square deviations: 799078211729.9299
[2025-12-03 17:47:38] 2025-12-03 16:46:35,613 | INFO     | sum of deviations: 4075698419663.0854
[2025-12-03 17:47:38] 2025-12-03 16:46:35,614 | INFO     | mean x: 1764737238.177243
[2025-12-03 17:47:38] 2025-12-03 16:46:35,614 | INFO     | mean y: 2883892.7527352297
[2025-12-03 17:47:38] 2025-12-03 16:46:35,614 | INFO     | intersect: -8998158392.192583
[2025-12-03 17:47:38] 2025-12-03 16:46:35,616 | INFO     | chi2: 3.0182422852297135
[2025-12-03 17:47:38] 2025-12-03 16:46:35,616 | INFO     | current chi2=3.0182422852297135 (change=11.377037295059168 %)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,616 | INFO     | right removable region: 1370
[2025-12-03 17:47:38] 2025-12-03 16:46:35,618 | INFO     | sum of square deviations: 825591956206.3324
[2025-12-03 17:47:38] 2025-12-03 16:46:35,672 | INFO     | sum of deviations: 2237747634420.8354
[2025-12-03 17:47:38] 2025-12-03 16:46:35,673 | INFO     | mean x: 1764738000.665945
[2025-12-03 17:47:38] 2025-12-03 16:46:35,673 | INFO     | mean y: 2867142.168109668
[2025-12-03 17:47:38] 2025-12-03 16:46:35,673 | INFO     | intersect: -4780413819.663145
[2025-12-03 17:47:38] 2025-12-03 16:46:35,675 | INFO     | chi2: 9.533626512471571
[2025-12-03 17:47:38] 2025-12-03 16:46:35,675 | INFO     | current chi2=9.533626512471571 (change=20.944621005735733 %)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,675 | INFO     | left removable region: 10
[2025-12-03 17:47:38] 2025-12-03 16:46:35,677 | INFO     | sum of square deviations: 779997839697.5037
[2025-12-03 17:47:38] 2025-12-03 16:46:35,726 | INFO     | sum of deviations: 3522631527672.637
[2025-12-03 17:47:38] 2025-12-03 16:46:35,727 | INFO     | mean x: 1764737512.6808825
[2025-12-03 17:47:38] 2025-12-03 16:46:35,727 | INFO     | mean y: 2893653.8977941177
[2025-12-03 17:47:38] 2025-12-03 16:46:35,727 | INFO     | intersect: -7967025855.939744
[2025-12-03 17:47:38] 2025-12-03 16:46:35,729 | INFO     | chi2: 0.32889761447668986
[2025-12-03 17:47:38] 2025-12-03 16:46:35,729 | INFO     | current memory leak: 4.52 B/s (using 1360 data points, chi2=0.33)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,730 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | ..............................
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . Timing measurements:
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . get job = 0 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . initial setup = 1 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . payload setup = 10 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . stage-in = 0 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . payload execution = 84858 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . stage-out = 4 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | . log creation = 1 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,731 | INFO     | ..............................
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | 
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | job summary report
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | --------------------------------------------------
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | PanDA job id: 6895354726
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | task id: 47556137
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | errors: (none)
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | pilot state: finished 
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | transexitcode: 0
[2025-12-03 17:47:38] 2025-12-03 16:46:35,840 | INFO     | exeerrorcode: 0
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | exeerrordiag: 
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | exitcode: 0
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | exitmsg: OK
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | cpuconsumptiontime: 316196 s
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | nevents: 1000
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | neventsw: 0
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | pid: 21024
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | pgrp: 21024
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | corecount: 8
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | event service: False
[2025-12-03 17:47:38] 2025-12-03 16:46:35,841 | INFO     | sizes: {0: 2284145, 1: 2284344, 2: 2284344, 8: 2284634, 12: 2284662, 84873: 2345691, 84877: 2354743, 84975: 2354933}
[2025-12-03 17:47:38] 2025-12-03 16:46:35,842 | INFO     | --------------------------------------------------
[2025-12-03 17:47:38] 2025-12-03 16:46:35,842 | INFO     | 
[2025-12-03 17:47:38] 2025-12-03 16:46:35,842 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-03 17:47:38] 2025-12-03 16:46:35,914 | INFO     | time since job start (84994s) is within the limit (172800.0s)
[2025-12-03 17:47:38] 2025-12-03 16:46:36,397 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,398 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,398 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,398 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,398 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,398 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,399 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,400 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 17:47:38] 2025-12-03 16:46:36,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,400 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 17:47:38] 2025-12-03 16:46:36,400 | INFO     | job 6895354726 has completed (purged errors)
[2025-12-03 17:47:38] 2025-12-03 16:46:36,400 | INFO     | overall cleanup function is called
[2025-12-03 17:47:38] 2025-12-03 16:46:37,421 | INFO     | --- collectZombieJob: --- 10, [21024]
[2025-12-03 17:47:38] 2025-12-03 16:46:37,421 | INFO     | zombie collector waiting for pid 21024
[2025-12-03 17:47:38] 2025-12-03 16:46:37,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 17:47:38] 2025-12-03 16:46:37,421 | INFO     | collected zombie processes
[2025-12-03 17:47:38] 2025-12-03 16:46:37,422 | INFO     | will attempt to kill all subprocesses of pid=21024
[2025-12-03 17:47:38] 2025-12-03 16:46:37,568 | INFO     | process IDs to be killed: [21024] (in reverse order)
[2025-12-03 17:47:38] 2025-12-03 16:46:38,308 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 17:47:38] 2025-12-03 16:46:38,308 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 17:47:38] 2025-12-03 16:46:38,311 | INFO     | did not find any defunct processes belonging to 21024
[2025-12-03 17:47:38] 2025-12-03 16:46:38,313 | INFO     | did not find any defunct processes belonging to 21024
[2025-12-03 17:47:38] 2025-12-03 16:46:38,359 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 17:47:38] 2025-12-03 16:46:38,360 | INFO     | ready for new job
[2025-12-03 17:47:38] 2025-12-03 16:46:38,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 17:47:38] 2025-12-03 16:46:38,365 | INFO     | ***************************************
[2025-12-03 17:47:38] 2025-12-03 16:46:38,365 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 17:47:38] 2025-12-03 16:46:38,365 | INFO     | ***************************************
[2025-12-03 17:47:38] 2025-12-03 16:46:38,365 | INFO     | 
[2025-12-03 17:47:38] 2025-12-03 16:46:38,366 | INFO     | pilot is running in a VM
[2025-12-03 17:47:38] 2025-12-03 16:46:38,366 | INFO     | architecture information:
[2025-12-03 17:47:38] 2025-12-03 16:46:38,373 | INFO     | executing command: cat /etc/os-release
[2025-12-03 17:47:38] 2025-12-03 16:46:38,552 | INFO     | cat /etc/os-release:
[2025-12-03 17:47:38] NAME="CentOS Linux"
[2025-12-03 17:47:38] VERSION="7 (Core)"
[2025-12-03 17:47:38] ID="centos"
[2025-12-03 17:47:38] ID_LIKE="rhel fedora"
[2025-12-03 17:47:38] VERSION_ID="7"
[2025-12-03 17:47:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 17:47:38] ANSI_COLOR="0;31"
[2025-12-03 17:47:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 17:47:38] HOME_URL="https://www.centos.org/"
[2025-12-03 17:47:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 17:47:38] 
[2025-12-03 17:47:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 17:47:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 17:47:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 17:47:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 17:47:38] 
[2025-12-03 17:47:38] 2025-12-03 16:46:38,553 | INFO     | ***************************************
[2025-12-03 17:47:38] 2025-12-03 16:46:39,056 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-03 17:47:38] 2025-12-03 16:46:39,290 | INFO     | sufficient remaining disk space (493624492032 B)
[2025-12-03 17:47:38] 2025-12-03 16:46:39,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 17:47:38] 2025-12-03 16:46:39,291 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 17:47:38] 2025-12-03 16:46:39,291 | INFO     | update_server=False
[2025-12-03 17:47:38] 2025-12-03 16:46:39,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 17:47:38] 2025-12-03 16:46:39,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 17:47:38] 2025-12-03 16:46:39,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 17:47:38] 2025-12-03 16:46:40,043 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:47:38] 2025-12-03 16:46:40,043 | INFO     | aborting loop
[2025-12-03 17:47:38] 2025-12-03 16:46:40,063 | INFO     | all data control threads have been joined
[2025-12-03 17:47:38] 2025-12-03 16:46:40,183 | INFO     | all job control threads have been joined
[2025-12-03 17:47:38] 2025-12-03 16:46:40,296 | INFO     | [job] retrieve thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:40,324 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:40,772 | INFO     | all payload control threads have been joined
[2025-12-03 17:47:38] 2025-12-03 16:46:40,853 | INFO     | [data] copytool_in thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:40,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:47:38] 2025-12-03 16:46:40,919 | INFO     | [job] validate thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:40,977 | INFO     | [payload] failed_post thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,049 | INFO     | [job] job monitor thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,057 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,073 | INFO     | [data] control thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,190 | INFO     | [job] control thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,261 | INFO     | [payload] validate_post thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,306 | INFO     | [data] copytool_out thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,529 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,690 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,778 | INFO     | [payload] control thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:41,863 | INFO     | [job] queue monitor thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:46:43,300 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 17:47:38] 2025-12-03 16:47:09,111 | INFO     | PID=14537 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 17:47:38] 2025-12-03 16:47:09,112 | INFO     | .. there are 9 such processes running
[2025-12-03 17:47:38] 2025-12-03 16:47:09,112 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 17:47:38] 2025-12-03 16:47:09,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 17:47:38] 2025-12-03 16:47:09,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 17:47:38] 2025-12-03 16:47:28,707 | INFO     | [monitor] cgroup control has ended
[2025-12-03 17:47:38] 2025-12-03 16:47:29,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844434011968)>', '<ExcThread(monitor, started 139843824756480)>']
[2025-12-03 17:47:38] 2025-12-03 16:47:30,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 17:47:38] 2025-12-03 16:47:30,237 | INFO     | [monitor] control thread has ended
[2025-12-03 17:47:38] 2025-12-03 16:47:34,466 | INFO     | all workflow threads have been joined
[2025-12-03 17:47:38] 2025-12-03 16:47:34,466 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 17:47:38] 2025-12-03 16:47:34,467 | INFO     | traces error code: 0
[2025-12-03 17:47:38] 2025-12-03 16:47:34,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 17:47:38] 2025-12-03 16:47:34,811 [wrapper] ==== pilot stdout END ====
[2025-12-03 17:47:38] 2025-12-03 16:47:34,891 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 17:47:38] 2025-12-03 16:47:34,925 [wrapper] pilotpid: 14537
[2025-12-03 17:47:38] 2025-12-03 16:47:34,965 [wrapper] Pilot exit status: 0
[2025-12-03 17:47:38] 2025-12-03 16:47:35,332 [wrapper] pandaids: 6895354726
[2025-12-03 17:47:38] 2025-12-03 16:47:35,987 [wrapper] cleanup supervisor_pilot 25574 14538
[2025-12-03 17:47:38] 2025-12-03 16:47:36,018 [wrapper] Test setup, not cleaning
[2025-12-03 17:47:38] 2025-12-03 16:47:36,050 [wrapper] apfmon messages muted
[2025-12-03 17:47:38] 2025-12-03 16:47:36,103 [wrapper] ==== wrapper stdout END ====
[2025-12-03 17:47:38] 2025-12-03 16:47:36,168 [wrapper] ==== wrapper stderr END ====
[2025-12-03 17:47:38]  *** Error codes and diagnostics ***
[2025-12-03 17:47:38]     "exeErrorCode": 0,
[2025-12-03 17:47:38]     "exeErrorDiag": "",
[2025-12-03 17:47:38]     "pilotErrorCode": 0,
[2025-12-03 17:47:38]     "pilotErrorDiag": "",
[2025-12-03 17:47:38]  *** Listing of results directory ***
[2025-12-03 17:47:38] total 1327592
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc      5112 Nov 23 06:27 queuedata.json
[2025-12-03 17:47:38] -rwx------. 1 boinc boinc     36292 Nov 23 06:28 runpilot2-wrapper.sh
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc       100 Dec  2 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 17:47:38] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 18:09 run_atlas
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc       105 Dec  2 18:09 job.xml
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc      6392 Dec  2 18:09 init_data.xml
[2025-12-03 17:47:38] -rw-r--r--. 2 boinc boinc 410068456 Dec  2 18:09 EVNT.47483658._000629.pool.root.1
[2025-12-03 17:47:38] -rw-r--r--. 2 boinc boinc     15847 Dec  2 18:09 start_atlas.sh
[2025-12-03 17:47:38] drwxrwx--x. 2 boinc boinc        68 Dec  2 18:09 shared
[2025-12-03 17:47:38] -rw-r--r--. 2 boinc boinc    590100 Dec  2 18:09 input.tar.gz
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc         0 Dec  2 18:09 boinc_lockfile
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc      2786 Dec  2 18:09 pandaJob.out
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc    988852 Dec  2 18:09 agis_schedconf.cvmfs.json
[2025-12-03 17:47:38] drwx------. 5 boinc boinc      4096 Dec  2 18:10 pilot3
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc       533 Dec  3 17:22 boinc_task_state.xml
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc 917793676 Dec  3 17:43 HITS.47556137._006247.pool.root.1
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc      1032 Dec  3 17:44 memory_monitor_summary.json
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc   1516240 Dec  3 17:44 agis_ddmendpoints.agis.ALL.json
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc   2477920 Dec  3 17:44 log.47556137._006247.job.log.tgz.1
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc        95 Dec  3 17:46 pilot_heartbeat.json
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc      8622 Dec  3 17:46 heartbeat.json
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc      8192 Dec  3 17:47 boinc_mmap_file
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc        29 Dec  3 17:47 wrapper_checkpoint.txt
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc      4885 Dec  3 17:47 pilotlog.txt
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc  11369994 Dec  3 17:47 log.47556137._006247.job.log.1
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc       353 Dec  3 17:47 output.list
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc       620 Dec  3 17:47 runtime_log
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc  13864960 Dec  3 17:47 result.tar.gz
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc      8833 Dec  3 17:47 runtime_log.err
[2025-12-03 17:47:38] -rw-------. 1 boinc boinc       662 Dec  3 17:47 dc9NDmepHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9eKKDmQskGLn.diag
[2025-12-03 17:47:38] -rw-r--r--. 1 boinc boinc     20793 Dec  3 17:47 stderr.txt
[2025-12-03 17:47:39] HITS file was successfully produced:
[2025-12-03 17:47:39] -rw-------. 1 boinc boinc 917793676 Dec  3 17:43 shared/HITS.pool.root.1
[2025-12-03 17:47:39]  *** Contents of shared directory: ***
[2025-12-03 17:47:39] total 1310880
[2025-12-03 17:47:39] -rw-r--r--. 2 boinc boinc 410068456 Dec  2 18:09 ATLAS.root_0
[2025-12-03 17:47:39] -rw-r--r--. 2 boinc boinc     15847 Dec  2 18:09 start_atlas.sh
[2025-12-03 17:47:39] -rw-r--r--. 2 boinc boinc    590100 Dec  2 18:09 input.tar.gz
[2025-12-03 17:47:39] -rw-------. 1 boinc boinc 917793676 Dec  3 17:43 HITS.pool.root.1
[2025-12-03 17:47:39] -rw-------. 1 boinc boinc  13864960 Dec  3 17:47 result.tar.gz
17:47:40 (10762): run_atlas exited; CPU time 316779.200270
17:47:40 (10762): called boinc_finish(0)

</stderr_txt>
]]>

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