Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:57:46 (20432): wrapper (7.7.26015): starting
14:57:46 (20432): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 14:57:46] Arguments: --nthreads 8
[2025-11-30 14:57:46] Threads: 8
[2025-11-30 14:57:46] Checking for CVMFS
[2025-11-30 14:57:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 14:57:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 14:57:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 14:57:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 14:57:46] 2.11.2.0 3869 109603 135500 153492 2 81 13326718 18432000 1885 130560 0 83248225 99.985 4110221 30549 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 14:57:46] CVMFS is ok
[2025-11-30 14:57:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 14:57:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 14:57:46] Further information can be found at the LHC@home message board.
[2025-11-30 14:57:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 14:57:46] Checking for apptainer binary...
[2025-11-30 14:57:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 14:57:46] Running /usr/bin/apptainer --version
[2025-11-30 14:57:46] apptainer version 1.3.2-1.el7
[2025-11-30 14:57:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 14:57:47] c-206-12.aglt2.org
[2025-11-30 14:57:47] apptainer works
[2025-11-30 14:57:47] Set ATHENA_PROC_NUMBER=8
[2025-11-30 14:57:47] Set ATHENA_CORE_NUMBER=8
[2025-11-30 14:57:47] Starting ATLAS job with PandaID=6894252763
[2025-11-30 14:57:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:47:33 (29117): wrapper (7.7.26015): starting
20:47:33 (29117): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 20:47:33] Arguments: --nthreads 8
[2025-11-30 20:47:33] Threads: 8
[2025-11-30 20:47:33] This job has been restarted, cleaning up previous attempt
[2025-11-30 20:47:33] Checking for CVMFS
[2025-11-30 20:47:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 20:47:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 20:47:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 20:47:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 20:47:33] 2.11.2.0 3869 109953 133640 153500 0 77 13406708 18432001 1 130560 0 83714634 99.985 4120911 30564 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 20:47:33] CVMFS is ok
[2025-11-30 20:47:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 20:47:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 20:47:33] Further information can be found at the LHC@home message board.
[2025-11-30 20:47:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 20:47:33] Checking for apptainer binary...
[2025-11-30 20:47:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 20:47:33] Running /usr/bin/apptainer --version
[2025-11-30 20:47:33] apptainer version 1.3.2-1.el7
[2025-11-30 20:47:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 20:47:35] c-206-12.aglt2.org
[2025-11-30 20:47:35] apptainer works
[2025-11-30 20:47:35] Set ATHENA_PROC_NUMBER=8
[2025-11-30 20:47:35] Set ATHENA_CORE_NUMBER=8
[2025-11-30 20:47:35] Starting ATLAS job with PandaID=6894252763
[2025-11-30 20:47:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 16:02:48]  *** The last 200 lines of the pilot log: ***
[2025-12-01 16:02:48] 2025-12-01 21:01:46,649 | INFO     | sum of deviations: 2016491326989.5554
[2025-12-01 16:02:48] 2025-12-01 21:01:46,649 | INFO     | mean x: 1764588282.7057269
[2025-12-01 16:02:48] 2025-12-01 21:01:46,649 | INFO     | mean y: 2911310.115418502
[2025-12-01 16:02:48] 2025-12-01 21:01:46,649 | INFO     | intersect: -7845380499.35423
[2025-12-01 16:02:48] 2025-12-01 21:01:46,651 | INFO     | chi2: 6.231524432722727
[2025-12-01 16:02:48] 2025-12-01 21:01:46,653 | INFO     | sum of square deviations: 447417094330.71204
[2025-12-01 16:02:48] 2025-12-01 21:01:46,698 | INFO     | sum of deviations: 2363875924437.35
[2025-12-01 16:02:48] 2025-12-01 21:01:46,698 | INFO     | mean x: 1764588130.2088497
[2025-12-01 16:02:48] 2025-12-01 21:01:46,699 | INFO     | mean y: 2920186.045132743
[2025-12-01 16:02:48] 2025-12-01 21:01:46,699 | INFO     | intersect: -9320074957.420244
[2025-12-01 16:02:48] 2025-12-01 21:01:46,700 | INFO     | chi2: 3.554522207307018
[2025-12-01 16:02:48] 2025-12-01 21:01:46,701 | INFO     | current chi2=3.554522207307018 (change=42.95902638780238 %)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,702 | INFO     | sum of square deviations: 441504399860.6885
[2025-12-01 16:02:48] 2025-12-01 21:01:46,750 | INFO     | monitor loop #4946: job 0:6894252763 is in state 'finished'
[2025-12-01 16:02:48] 2025-12-01 21:01:46,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,751 | INFO     | sum of deviations: 2566144684373.273
[2025-12-01 16:02:48] 2025-12-01 21:01:46,751 | INFO     | mean x: 1764587977.712
[2025-12-01 16:02:48] 2025-12-01 21:01:46,751 | INFO     | mean y: 2925402.8835555557
[2025-12-01 16:02:48] 2025-12-01 21:01:46,752 | INFO     | intersect: -10253343980.940134
[2025-12-01 16:02:48] 2025-12-01 21:01:46,753 | INFO     | chi2: 2.5835315993571664
[2025-12-01 16:02:48] 2025-12-01 21:01:46,753 | INFO     | current chi2=2.5835315993571664 (change=27.317049980832586 %)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,755 | INFO     | sum of square deviations: 435643963572.57135
[2025-12-01 16:02:48] 2025-12-01 21:01:46,803 | INFO     | sum of deviations: 2663880193917.365
[2025-12-01 16:02:48] 2025-12-01 21:01:46,803 | INFO     | mean x: 1764587825.2142856
[2025-12-01 16:02:48] 2025-12-01 21:01:46,803 | INFO     | mean y: 2927942.5776785715
[2025-12-01 16:02:48] 2025-12-01 21:01:46,803 | INFO     | intersect: -10787191859.536827
[2025-12-01 16:02:48] 2025-12-01 21:01:46,805 | INFO     | chi2: 2.226658656471451
[2025-12-01 16:02:48] 2025-12-01 21:01:46,805 | INFO     | current chi2=2.226658656471451 (change=13.813376347884128 %)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,805 | INFO     | right removable region: 1119
[2025-12-01 16:02:48] 2025-12-01 21:01:46,807 | INFO     | sum of square deviations: 447416605720.7111
[2025-12-01 16:02:48] 2025-12-01 21:01:46,851 | INFO     | sum of deviations: 1739393763267.926
[2025-12-01 16:02:48] 2025-12-01 21:01:46,852 | INFO     | mean x: 1764588435.2088497
[2025-12-01 16:02:48] 2025-12-01 21:01:46,852 | INFO     | mean y: 2918383.6274336283
[2025-12-01 16:02:48] 2025-12-01 21:01:46,852 | INFO     | intersect: -6857162533.559011
[2025-12-01 16:02:48] 2025-12-01 21:01:46,854 | INFO     | chi2: 4.306447026499376
[2025-12-01 16:02:48] 2025-12-01 21:01:46,854 | INFO     | current chi2=4.306447026499376 (change=30.892559710019956 %)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,856 | INFO     | sum of square deviations: 441503629675.9509
[2025-12-01 16:02:48] 2025-12-01 21:01:46,899 | INFO     | sum of deviations: 1657356632701.738
[2025-12-01 16:02:48] 2025-12-01 21:01:46,899 | INFO     | mean x: 1764588587.7093334
[2025-12-01 16:02:48] 2025-12-01 21:01:46,899 | INFO     | mean y: 2920499.081777778
[2025-12-01 16:02:48] 2025-12-01 21:01:46,900 | INFO     | intersect: -6621153241.775985
[2025-12-01 16:02:48] 2025-12-01 21:01:46,901 | INFO     | chi2: 4.237874725135533
[2025-12-01 16:02:48] 2025-12-01 21:01:46,901 | INFO     | current chi2=4.237874725135533 (change=1.5923173080242152 %)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,902 | INFO     | left removable region: 20
[2025-12-01 16:02:48] 2025-12-01 21:01:46,903 | INFO     | sum of square deviations: 411595370536.5571
[2025-12-01 16:02:48] 2025-12-01 21:01:46,932 | INFO     | sum of deviations: 2185162053792.954
[2025-12-01 16:02:48] 2025-12-01 21:01:46,932 | INFO     | mean x: 1764588404.7179253
[2025-12-01 16:02:48] 2025-12-01 21:01:46,932 | INFO     | mean y: 2940358.1546860784
[2025-12-01 16:02:48] 2025-12-01 21:01:46,932 | INFO     | intersect: -9365269049.8522
[2025-12-01 16:02:48] 2025-12-01 21:01:46,933 | INFO     | chi2: 0.1902262796328534
[2025-12-01 16:02:48] 2025-12-01 21:01:46,934 | INFO     | current memory leak: 5.31 B/s (using 1099 data points, chi2=0.19)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | could have reported an average CPU frequency of 2584 MHz (41 samples)
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | ..............................
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | . Timing measurements:
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | . get job = 0 s
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | . initial setup = 2 s
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | . payload setup = 7 s
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | . stage-in = 0 s
[2025-12-01 16:02:48] 2025-12-01 21:01:46,935 | INFO     | . payload execution = 69204 s
[2025-12-01 16:02:48] 2025-12-01 21:01:46,936 | INFO     | . stage-out = 4 s
[2025-12-01 16:02:48] 2025-12-01 21:01:46,936 | INFO     | . log creation = 0 s
[2025-12-01 16:02:48] 2025-12-01 21:01:46,936 | INFO     | ..............................
[2025-12-01 16:02:48] 2025-12-01 21:01:47,043 | INFO     | 
[2025-12-01 16:02:48] 2025-12-01 21:01:47,044 | INFO     | job summary report
[2025-12-01 16:02:48] 2025-12-01 21:01:47,044 | INFO     | --------------------------------------------------
[2025-12-01 16:02:48] 2025-12-01 21:01:47,044 | INFO     | PanDA job id: 6894252763
[2025-12-01 16:02:48] 2025-12-01 21:01:47,044 | INFO     | task id: 47533962
[2025-12-01 16:02:48] 2025-12-01 21:01:47,044 | INFO     | errors: (none)
[2025-12-01 16:02:48] 2025-12-01 21:01:47,045 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 16:02:48] 2025-12-01 21:01:47,045 | INFO     | pilot state: finished 
[2025-12-01 16:02:48] 2025-12-01 21:01:47,045 | INFO     | transexitcode: 0
[2025-12-01 16:02:48] 2025-12-01 21:01:47,045 | INFO     | exeerrorcode: 0
[2025-12-01 16:02:48] 2025-12-01 21:01:47,045 | INFO     | exeerrordiag: 
[2025-12-01 16:02:48] 2025-12-01 21:01:47,045 | INFO     | exitcode: 0
[2025-12-01 16:02:48] 2025-12-01 21:01:47,046 | INFO     | exitmsg: OK
[2025-12-01 16:02:48] 2025-12-01 21:01:47,046 | INFO     | cpuconsumptiontime: 540645 s
[2025-12-01 16:02:48] 2025-12-01 21:01:47,046 | INFO     | nevents: 1000
[2025-12-01 16:02:48] 2025-12-01 21:01:47,046 | INFO     | neventsw: 0
[2025-12-01 16:02:48] 2025-12-01 21:01:47,046 | INFO     | pid: 28227
[2025-12-01 16:02:48] 2025-12-01 21:01:47,046 | INFO     | pgrp: 28227
[2025-12-01 16:02:48] 2025-12-01 21:01:47,047 | INFO     | corecount: 8
[2025-12-01 16:02:48] 2025-12-01 21:01:47,047 | INFO     | event service: False
[2025-12-01 16:02:48] 2025-12-01 21:01:47,047 | INFO     | sizes: {0: 2284144, 1: 2284343, 5: 2284605, 11: 2284661, 69214: 2340834, 69219: 2350012, 69223: 2350298}
[2025-12-01 16:02:48] 2025-12-01 21:01:47,047 | INFO     | --------------------------------------------------
[2025-12-01 16:02:48] 2025-12-01 21:01:47,047 | INFO     | 
[2025-12-01 16:02:48] 2025-12-01 21:01:47,047 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-01 16:02:48] 2025-12-01 21:01:47,125 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,125 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,125 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,125 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,128 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 16:02:48] 2025-12-01 21:01:47,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,128 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 16:02:48] 2025-12-01 21:01:47,129 | INFO     | job 6894252763 has completed (purged errors)
[2025-12-01 16:02:48] 2025-12-01 21:01:47,129 | INFO     | overall cleanup function is called
[2025-12-01 16:02:48] 2025-12-01 21:01:48,145 | INFO     | --- collectZombieJob: --- 10, [28227]
[2025-12-01 16:02:48] 2025-12-01 21:01:48,146 | INFO     | zombie collector waiting for pid 28227
[2025-12-01 16:02:48] 2025-12-01 21:01:48,146 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 16:02:48] 2025-12-01 21:01:48,146 | INFO     | collected zombie processes
[2025-12-01 16:02:48] 2025-12-01 21:01:48,146 | INFO     | will attempt to kill all subprocesses of pid=28227
[2025-12-01 16:02:48] 2025-12-01 21:01:48,300 | INFO     | process IDs to be killed: [28227] (in reverse order)
[2025-12-01 16:02:48] 2025-12-01 21:01:48,348 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 16:02:48] 2025-12-01 21:01:48,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 16:02:48] 2025-12-01 21:01:48,351 | INFO     | did not find any defunct processes belonging to 28227
[2025-12-01 16:02:48] 2025-12-01 21:01:48,353 | INFO     | did not find any defunct processes belonging to 28227
[2025-12-01 16:02:48] 2025-12-01 21:01:48,354 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 16:02:48] 2025-12-01 21:01:48,355 | INFO     | ready for new job
[2025-12-01 16:02:48] 2025-12-01 21:01:48,355 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 16:02:48] 2025-12-01 21:01:48,358 | INFO     | ***************************************
[2025-12-01 16:02:48] 2025-12-01 21:01:48,359 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 16:02:48] 2025-12-01 21:01:48,359 | INFO     | ***************************************
[2025-12-01 16:02:48] 2025-12-01 21:01:48,359 | INFO     | 
[2025-12-01 16:02:48] 2025-12-01 21:01:48,360 | INFO     | architecture information:
[2025-12-01 16:02:48] 2025-12-01 21:01:48,360 | INFO     | executing command: cat /etc/os-release
[2025-12-01 16:02:48] 2025-12-01 21:01:48,370 | INFO     | cat /etc/os-release:
[2025-12-01 16:02:48] NAME="CentOS Linux"
[2025-12-01 16:02:48] VERSION="7 (Core)"
[2025-12-01 16:02:48] ID="centos"
[2025-12-01 16:02:48] ID_LIKE="rhel fedora"
[2025-12-01 16:02:48] VERSION_ID="7"
[2025-12-01 16:02:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 16:02:48] ANSI_COLOR="0;31"
[2025-12-01 16:02:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 16:02:48] HOME_URL="https://www.centos.org/"
[2025-12-01 16:02:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 16:02:48] 
[2025-12-01 16:02:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 16:02:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 16:02:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 16:02:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 16:02:48] 
[2025-12-01 16:02:48] 2025-12-01 21:01:48,370 | INFO     | ***************************************
[2025-12-01 16:02:48] 2025-12-01 21:01:48,873 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-01 16:02:48] 2025-12-01 21:01:48,891 | INFO     | sufficient remaining disk space (25563234304 B)
[2025-12-01 16:02:48] 2025-12-01 21:01:48,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 16:02:48] 2025-12-01 21:01:48,892 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 16:02:48] 2025-12-01 21:01:48,892 | INFO     | update_server=False
[2025-12-01 16:02:48] 2025-12-01 21:01:48,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 16:02:48] 2025-12-01 21:01:48,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:02:48] 2025-12-01 21:01:48,893 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 16:02:48] 2025-12-01 21:01:49,255 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 16:02:48] 2025-12-01 21:01:49,256 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 16:02:48] 2025-12-01 21:01:49,256 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:02:48] 2025-12-01 21:01:49,256 | INFO     | will abort loop
[2025-12-01 16:02:48] 2025-12-01 21:01:49,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 16:02:48] 2025-12-01 21:01:49,568 | INFO     | all data control threads have been joined
[2025-12-01 16:02:48] 2025-12-01 21:01:49,838 | INFO     | all payload control threads have been joined
[2025-12-01 16:02:48] 2025-12-01 21:01:49,898 | INFO     | [job] retrieve thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:49,898 | INFO     | [job] queue monitor thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,053 | INFO     | all job control threads have been joined
[2025-12-01 16:02:48] 2025-12-01 21:01:50,262 | INFO     | [job] job monitor thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,404 | INFO     | [payload] failed_post thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,574 | INFO     | [data] control thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,678 | INFO     | [payload] validate_post thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,844 | INFO     | [payload] control thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,901 | INFO     | [data] copytool_out thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,981 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:50,987 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:51,060 | INFO     | [job] control thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:51,083 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:51,144 | INFO     | [job] validate thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:51,297 | INFO     | [data] copytool_in thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:51,351 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:01:53,315 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 16:02:48] 2025-12-01 21:02:19,517 | INFO     | PID=8350 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 16:02:48] 2025-12-01 21:02:19,517 | INFO     | .. there are 3 such processes running
[2025-12-01 16:02:48] 2025-12-01 21:02:19,518 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 16:02:48] 2025-12-01 21:02:19,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 16:02:48] 2025-12-01 21:02:19,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 16:02:48] 2025-12-01 21:02:42,886 | INFO     | [monitor] cgroup control has ended
[2025-12-01 16:02:48] 2025-12-01 21:02:42,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694245590848)>', '<ExcThread(monitor, started 139693626726144)>']
[2025-12-01 16:02:48] 2025-12-01 21:02:43,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 16:02:48] 2025-12-01 21:02:43,638 | INFO     | [monitor] control thread has ended
[2025-12-01 16:02:48] 2025-12-01 21:02:47,912 | INFO     | all workflow threads have been joined
[2025-12-01 16:02:48] 2025-12-01 21:02:47,913 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 16:02:48] 2025-12-01 21:02:47,913 | INFO     | traces error code: 0
[2025-12-01 16:02:48] 2025-12-01 21:02:47,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 16:02:48] 2025-12-01 21:02:48,034 [wrapper] ==== pilot stdout END ====
[2025-12-01 16:02:48] 2025-12-01 21:02:48,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 16:02:48] 2025-12-01 21:02:48,039 [wrapper] pilotpid: 8350
[2025-12-01 16:02:48] 2025-12-01 21:02:48,042 [wrapper] Pilot exit status: 0
[2025-12-01 16:02:48] 2025-12-01 21:02:48,050 [wrapper] pandaids: 6894252763 6894252763
[2025-12-01 16:02:48] 2025-12-01 21:02:48,090 [wrapper] cleanup supervisor_pilot 16494 8351
[2025-12-01 16:02:48] 2025-12-01 21:02:48,092 [wrapper] Test setup, not cleaning
[2025-12-01 16:02:48] 2025-12-01 21:02:48,094 [wrapper] apfmon messages muted
[2025-12-01 16:02:48] 2025-12-01 21:02:48,096 [wrapper] ==== wrapper stdout END ====
[2025-12-01 16:02:48] 2025-12-01 21:02:48,098 [wrapper] ==== wrapper stderr END ====
[2025-12-01 16:02:48]  *** Error codes and diagnostics ***
[2025-12-01 16:02:48]     "exeErrorCode": 0,
[2025-12-01 16:02:48]     "exeErrorDiag": "",
[2025-12-01 16:02:48]     "pilotErrorCode": 0,
[2025-12-01 16:02:48]     "pilotErrorDiag": "",
[2025-12-01 16:02:48]  *** Listing of results directory ***
[2025-12-01 16:02:48] total 1736052
[2025-12-01 16:02:48] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-12-01 16:02:48] -rwx------ 1 boincer umatlas     36292 Nov 26 20:29 runpilot2-wrapper.sh
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 20:31 queuedata.json
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas       100 Nov 30 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 16:02:48] -rwxr-xr-x 1 boincer umatlas      7986 Nov 30 14:57 run_atlas
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas       105 Nov 30 14:57 job.xml
[2025-12-01 16:02:48] -rw-r--r-- 3 boincer umatlas 413216770 Nov 30 14:57 EVNT.47493127._001043.pool.root.1
[2025-12-01 16:02:48] -rw-r--r-- 3 boincer umatlas 413216770 Nov 30 14:57 ATLAS.root_0
[2025-12-01 16:02:48] drwxrwx--x 2 boincer umatlas      4096 Nov 30 14:57 shared
[2025-12-01 16:02:48] -rw-r--r-- 2 boincer umatlas    590105 Nov 30 14:57 input.tar.gz
[2025-12-01 16:02:48] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 14:57 start_atlas.sh
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas         0 Nov 30 14:57 boinc_lockfile
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas      2787 Nov 30 20:47 pandaJob.out
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas        57 Nov 30 20:47 setup.sh.local
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas    993253 Nov 30 20:47 agis_schedconf.cvmfs.json
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas       533 Dec  1 15:47 boinc_task_state.xml
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas      5954 Dec  1 15:54 init_data.xml
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas 923592976 Dec  1 16:01 HITS.47533962._000425.pool.root.1
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas      1064 Dec  1 16:01 memory_monitor_summary.json
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas   1516240 Dec  1 16:01 agis_ddmendpoints.agis.ALL.json
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas   2305418 Dec  1 16:01 log.47533962._000425.job.log.tgz.1
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas      8665 Dec  1 16:01 heartbeat.json
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas        96 Dec  1 16:02 pilot_heartbeat.json
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 16:02 boinc_mmap_file
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas        29 Dec  1 16:02 wrapper_checkpoint.txt
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas      5007 Dec  1 16:02 pilotlog.txt
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas   9576368 Dec  1 16:02 log.47533962._000425.job.log.1
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas       353 Dec  1 16:02 output.list
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas       620 Dec  1 16:02 runtime_log
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas  11898880 Dec  1 16:02 result.tar.gz
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas      9428 Dec  1 16:02 runtime_log.err
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas       793 Dec  1 16:02 pnjNDmwzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmueNKDmwaZ0Fm.diag
[2025-12-01 16:02:48] -rw-r--r-- 1 boincer umatlas     23319 Dec  1 16:02 stderr.txt
[2025-12-01 16:02:48] HITS file was successfully produced:
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas 923592976 Dec  1 16:01 shared/HITS.pool.root.1
[2025-12-01 16:02:48]  *** Contents of shared directory: ***
[2025-12-01 16:02:48] total 1317708
[2025-12-01 16:02:48] -rw-r--r-- 3 boincer umatlas 413216770 Nov 30 14:57 ATLAS.root_0
[2025-12-01 16:02:48] -rw-r--r-- 2 boincer umatlas    590105 Nov 30 14:57 input.tar.gz
[2025-12-01 16:02:48] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 14:57 start_atlas.sh
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas 923592976 Dec  1 16:01 HITS.pool.root.1
[2025-12-01 16:02:48] -rw------- 1 boincer umatlas  11898880 Dec  1 16:02 result.tar.gz
16:02:49 (29117): run_atlas exited; CPU time 540282.857611
16:02:49 (29117): called boinc_finish(0)

</stderr_txt>
]]>

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