Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:29:04 (27065): wrapper (7.7.26015): starting
00:29:04 (27065): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 00:29:04] Arguments: --nthreads 8
[2025-12-01 00:29:04] Threads: 8
[2025-12-01 00:29:04] Checking for CVMFS
[2025-12-01 00:29:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:29:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:29:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:29:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:29:04] 2.11.0.0 4150 71712 118828 153498 1 88 3946967 4096001 2814 130560 2 8278222 99.647 7032042 668 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 00:29:04] CVMFS is ok
[2025-12-01 00:29:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:29:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:29:04] Further information can be found at the LHC@home message board.
[2025-12-01 00:29:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:29:04] Checking for apptainer binary...
[2025-12-01 00:29:04] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 00:29:04] apptainer is not installed, using version from CVMFS
[2025-12-01 00:29:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:29:05] WARNING: Environment variable TMPDIR already has value [/tmp/job_10937609/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node034
[2025-12-01 00:29:05] apptainer works
[2025-12-01 00:29:05] Set ATHENA_PROC_NUMBER=8
[2025-12-01 00:29:05] Set ATHENA_CORE_NUMBER=8
[2025-12-01 00:29:05] Starting ATLAS job with PandaID=6899449022
[2025-12-01 00:29:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10937609/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 04:57:05]  *** The last 200 lines of the pilot log: ***
[2025-12-01 04:57:05] 2025-12-01 03:56:31,980 | INFO     | time since job start (16041s) is within the limit (172800.0s)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,376 | INFO     | monitor loop #1173: job 0:6899449022 is in state 'finished'
[2025-12-01 04:57:05] 2025-12-01 03:56:33,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,539 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 04:57:05] 2025-12-01 03:56:33,556 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2514.3285625
[2025-12-01 04:57:05] 2025-12-01 03:56:33,573 | INFO     | using path: /tmp/job_10937609/atlas/pilot/slots/0/PanDA_Pilot-6899449022/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,573 | INFO     | extracted standard info from prmon json
[2025-12-01 04:57:05] 2025-12-01 03:56:33,573 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 04:57:05] 2025-12-01 03:56:33,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 04:57:05] 2025-12-01 03:56:33,576 | INFO     | fitting pss+swap vs Time
[2025-12-01 04:57:05] 2025-12-01 03:56:33,576 | INFO     | sum of square deviations: 5640782972.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,577 | INFO     | sum of deviations: 133461308483.0001
[2025-12-01 04:57:05] 2025-12-01 03:56:33,577 | INFO     | mean x: 1764553359.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,577 | INFO     | mean y: 2893121.3041825094
[2025-12-01 04:57:05] 2025-12-01 03:56:33,577 | INFO     | intersect: -41746559277.27199
[2025-12-01 04:57:05] 2025-12-01 03:56:33,577 | INFO     | chi2: 2.96331425942972
[2025-12-01 04:57:05] 2025-12-01 03:56:33,577 | INFO     | sum of square deviations: 5325139844.5
[2025-12-01 04:57:05] 2025-12-01 03:56:33,578 | INFO     | sum of deviations: 180384596940.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,578 | INFO     | mean x: 1764553206.5
[2025-12-01 04:57:05] 2025-12-01 03:56:33,578 | INFO     | mean y: 2915600.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,578 | INFO     | intersect: -59769828070.27885
[2025-12-01 04:57:05] 2025-12-01 03:56:33,579 | INFO     | chi2: 1.455647253936032
[2025-12-01 04:57:05] 2025-12-01 03:56:33,579 | INFO     | current chi2=1.455647253936032 (change=50.877729241711734 %)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,579 | INFO     | sum of square deviations: 5021496942.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | sum of deviations: 173985389439.00003
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | mean x: 1764553054.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | mean y: 2912385.4150197627
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | intersect: -61135519805.622025
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | chi2: 1.452792712916414
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | current chi2=1.452792712916414 (change=0.19610115101026726 %)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | right removable region: 252
[2025-12-01 04:57:05] 2025-12-01 03:56:33,580 | INFO     | sum of square deviations: 5325139844.5
[2025-12-01 04:57:05] 2025-12-01 03:56:33,581 | INFO     | sum of deviations: 83776335824.49997
[2025-12-01 04:57:05] 2025-12-01 03:56:33,581 | INFO     | mean x: 1764553511.5
[2025-12-01 04:57:05] 2025-12-01 03:56:33,581 | INFO     | mean y: 2916944.7170542637
[2025-12-01 04:57:05] 2025-12-01 03:56:33,581 | INFO     | intersect: -27757448393.37011
[2025-12-01 04:57:05] 2025-12-01 03:56:33,582 | INFO     | chi2: 1.580162999077929
[2025-12-01 04:57:05] 2025-12-01 03:56:33,582 | INFO     | current chi2=1.580162999077929 (change=46.67582103215654 %)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,582 | INFO     | sum of square deviations: 5021496942.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | sum of deviations: 70453566377.99995
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | mean x: 1764553664.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | mean y: 2923630.691699605
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | intersect: -24754454523.690342
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | chi2: 1.5566172287650448
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | current chi2=1.5566172287650448 (change=1.490084904318334 %)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | left removable region: 20
[2025-12-01 04:57:05] 2025-12-01 03:56:33,583 | INFO     | sum of square deviations: 3871990738.0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,584 | INFO     | sum of deviations: 90205726186.50002
[2025-12-01 04:57:05] 2025-12-01 03:56:33,584 | INFO     | mean x: 1764553633.5
[2025-12-01 04:57:05] 2025-12-01 03:56:33,584 | INFO     | mean y: 2956391.952586207
[2025-12-01 04:57:05] 2025-12-01 03:56:33,584 | INFO     | intersect: -41105830450.62966
[2025-12-01 04:57:05] 2025-12-01 03:56:33,584 | INFO     | chi2: 0.017413848787299034
[2025-12-01 04:57:05] 2025-12-01 03:56:33,584 | INFO     | current memory leak: 23.30 B/s (using 232 data points, chi2=0.02)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | could have reported an average CPU frequency of 2995 MHz (12 samples)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | ..............................
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . Timing measurements:
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . get job = 0 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . initial setup = 1 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . payload setup = 2 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . stage-in = 0 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . payload execution = 16017 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . stage-out = 1 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | . log creation = 0 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,585 | INFO     | ..............................
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | 
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | job summary report
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | --------------------------------------------------
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | PanDA job id: 6899449022
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | task id: 47556173
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | errors: (none)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | pilot state: finished 
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | transexitcode: 0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | exeerrorcode: 0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | exeerrordiag: 
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | exitcode: 0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | exitmsg: OK
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | cpuconsumptiontime: 121117 s
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | nevents: 1000
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | neventsw: 0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | pid: 20894
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | pgrp: 20894
[2025-12-01 04:57:05] 2025-12-01 03:56:33,634 | INFO     | corecount: 8
[2025-12-01 04:57:05] 2025-12-01 03:56:33,635 | INFO     | event service: False
[2025-12-01 04:57:05] 2025-12-01 03:56:33,635 | INFO     | sizes: {0: 2284442, 2: 2284704, 11: 2284732, 16023: 2317038, 16024: 2317037, 16025: 2326117, 16029: 2326301, 16030: 2326547}
[2025-12-01 04:57:05] 2025-12-01 03:56:33,635 | INFO     | --------------------------------------------------
[2025-12-01 04:57:05] 2025-12-01 03:56:33,635 | INFO     | 
[2025-12-01 04:57:05] 2025-12-01 03:56:33,635 | INFO     | executing command: ls -lF /tmp/job_10937609/atlas/pilot/slots/0
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 04:57:05] 2025-12-01 03:56:33,644 | INFO     | job 6899449022 has completed (purged errors)
[2025-12-01 04:57:05] 2025-12-01 03:56:33,645 | INFO     | overall cleanup function is called
[2025-12-01 04:57:05] 2025-12-01 03:56:34,652 | INFO     | --- collectZombieJob: --- 10, [20894]
[2025-12-01 04:57:05] 2025-12-01 03:56:34,652 | INFO     | zombie collector waiting for pid 20894
[2025-12-01 04:57:05] 2025-12-01 03:56:34,652 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 04:57:05] 2025-12-01 03:56:34,652 | INFO     | collected zombie processes
[2025-12-01 04:57:05] 2025-12-01 03:56:34,652 | INFO     | will attempt to kill all subprocesses of pid=20894
[2025-12-01 04:57:05] 2025-12-01 03:56:34,767 | INFO     | process IDs to be killed: [20894] (in reverse order)
[2025-12-01 04:57:05] 2025-12-01 03:56:34,810 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 04:57:05] 2025-12-01 03:56:34,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 04:57:05] 2025-12-01 03:56:34,814 | INFO     | did not find any defunct processes belonging to 20894
[2025-12-01 04:57:05] 2025-12-01 03:56:34,818 | INFO     | did not find any defunct processes belonging to 20894
[2025-12-01 04:57:05] 2025-12-01 03:56:34,818 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 04:57:05] 2025-12-01 03:56:34,818 | INFO     | ready for new job
[2025-12-01 04:57:05] 2025-12-01 03:56:34,818 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 04:57:05] 2025-12-01 03:56:34,819 | INFO     | ***************************************
[2025-12-01 04:57:05] 2025-12-01 03:56:34,819 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 04:57:05] 2025-12-01 03:56:34,819 | INFO     | ***************************************
[2025-12-01 04:57:05] 2025-12-01 03:56:34,819 | INFO     | 
[2025-12-01 04:57:05] 2025-12-01 03:56:34,832 | INFO     | architecture information:
[2025-12-01 04:57:05] 2025-12-01 03:56:34,832 | INFO     | executing command: cat /etc/os-release
[2025-12-01 04:57:05] 2025-12-01 03:56:34,838 | INFO     | cat /etc/os-release:
[2025-12-01 04:57:05] NAME="CentOS Linux"
[2025-12-01 04:57:05] VERSION="7 (Core)"
[2025-12-01 04:57:05] ID="centos"
[2025-12-01 04:57:05] ID_LIKE="rhel fedora"
[2025-12-01 04:57:05] VERSION_ID="7"
[2025-12-01 04:57:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 04:57:05] ANSI_COLOR="0;31"
[2025-12-01 04:57:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 04:57:05] HOME_URL="https://www.centos.org/"
[2025-12-01 04:57:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 04:57:05] 
[2025-12-01 04:57:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 04:57:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 04:57:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 04:57:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 04:57:05] 
[2025-12-01 04:57:05] 2025-12-01 03:56:34,838 | INFO     | ***************************************
[2025-12-01 04:57:05] 2025-12-01 03:56:35,341 | INFO     | executing command: df -mP /tmp/job_10937609/atlas/pilot/slots/0
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | INFO     | sufficient remaining disk space (212997242880 B)
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | INFO     | update_server=False
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:57:05] 2025-12-01 03:56:35,349 | INFO     | aborting loop
[2025-12-01 04:57:05] 2025-12-01 03:56:35,705 | INFO     | all payload control threads have been joined
[2025-12-01 04:57:05] 2025-12-01 03:56:36,054 | INFO     | all data control threads have been joined
[2025-12-01 04:57:05] 2025-12-01 03:56:36,352 | INFO     | [monitor] cgroup control has ended
[2025-12-01 04:57:05] 2025-12-01 03:56:36,354 | INFO     | [job] retrieve thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:36,354 | INFO     | [job] queue monitor thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:36,355 | INFO     | [job] job monitor thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:36,390 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:36,545 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 04:57:05] 2025-12-01 03:56:36,710 | INFO     | [payload] control thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:36,932 | INFO     | [job] validate thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:36,952 | INFO     | all job control threads have been joined
[2025-12-01 04:57:05] 2025-12-01 03:56:37,059 | INFO     | [data] control thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:37,085 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:37,626 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:37,630 | INFO     | [payload] validate_post thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:37,656 | INFO     | [data] copytool_in thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:37,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:37,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 04:57:05] 2025-12-01 03:56:37,822 | INFO     | [payload] failed_post thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:37,957 | INFO     | [job] control thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:38,551 | INFO     | [data] copytool_out thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:41,780 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 04:57:05] 2025-12-01 03:56:41,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2025-12-01 04:57:05] 2025-12-01 03:56:46,941 | INFO     | all workflow threads have been joined
[2025-12-01 04:57:05] 2025-12-01 03:56:46,941 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 04:57:05] 2025-12-01 03:56:46,942 | INFO     | traces error code: 0
[2025-12-01 04:57:05] 2025-12-01 03:56:46,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 04:57:05] 2025-12-01 03:57:05,184 | INFO     | PID=1215 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 04:57:05] 2025-12-01 03:57:05,184 | INFO     | .. there are 5 such processes running
[2025-12-01 04:57:05] 2025-12-01 03:57:05,184 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 04:57:05] 2025-12-01 03:57:05,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 04:57:05] 2025-12-01 03:57:05,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 04:57:05] 2025-12-01 03:57:05,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 04:57:05] 2025-12-01 03:57:05,184 | INFO     | [monitor] control thread has ended
[2025-12-01 04:57:05] 2025-12-01 03:57:05,236 [wrapper] ==== pilot stdout END ====
[2025-12-01 04:57:05] 2025-12-01 03:57:05,237 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 04:57:05] 2025-12-01 03:57:05,239 [wrapper] pilotpid: 1215
[2025-12-01 04:57:05] 2025-12-01 03:57:05,240 [wrapper] Pilot exit status: 0
[2025-12-01 04:57:05] 2025-12-01 03:57:05,244 [wrapper] pandaids: 6899449022
[2025-12-01 04:57:05] 2025-12-01 03:57:05,269 [wrapper] cleanup supervisor_pilot 22239 1216
[2025-12-01 04:57:05] 2025-12-01 03:57:05,270 [wrapper] Test setup, not cleaning
[2025-12-01 04:57:05] 2025-12-01 03:57:05,272 [wrapper] apfmon messages muted
[2025-12-01 04:57:05] 2025-12-01 03:57:05,273 [wrapper] ==== wrapper stdout END ====
[2025-12-01 04:57:05] 2025-12-01 03:57:05,274 [wrapper] ==== wrapper stderr END ====
[2025-12-01 04:57:05]  *** Error codes and diagnostics ***
[2025-12-01 04:57:05]     "exeErrorCode": 0,
[2025-12-01 04:57:05]     "exeErrorDiag": "",
[2025-12-01 04:57:05]     "pilotErrorCode": 0,
[2025-12-01 04:57:05]     "pilotErrorDiag": "",
[2025-12-01 04:57:05]  *** Listing of results directory ***
[2025-12-01 04:57:05] total 1302008
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user    576529 Nov 27 02:09 pilot3.tar.gz
[2025-12-01 04:57:05] -rwx------ 1 mf493845 unix-user     36292 Nov 27 02:29 runpilot2-wrapper.sh
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user      5112 Nov 27 02:31 queuedata.json
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user       100 Nov 30 22:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 04:57:05] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 22:44 run_atlas
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user       105 Nov 30 22:44 job.xml
[2025-12-01 04:57:05] -rw-r--r-- 2 mf493845 unix-user 409249876 Dec  1 00:29 EVNT.47483658._003302.pool.root.1
[2025-12-01 04:57:05] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 00:29 start_atlas.sh
[2025-12-01 04:57:05] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 00:29 shared
[2025-12-01 04:57:05] -rw-r--r-- 2 mf493845 unix-user    590109 Dec  1 00:29 input.tar.gz
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user      6391 Dec  1 00:29 init_data.xml
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user         0 Dec  1 00:29 boinc_setup_complete
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user      8192 Dec  1 00:29 boinc_mmap_file
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user         0 Dec  1 00:29 boinc_lockfile
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user      2787 Dec  1 00:29 pandaJob.out
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user    993245 Dec  1 00:29 agis_schedconf.cvmfs.json
[2025-12-01 04:57:05] drwx------ 5 mf493845 unix-user       440 Dec  1 00:29 pilot3
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user 912351008 Dec  1 04:56 HITS.47556173._002590.pool.root.1
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user        95 Dec  1 04:56 pilot_heartbeat.json
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user      1037 Dec  1 04:56 memory_monitor_summary.json
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user   1516240 Dec  1 04:56 agis_ddmendpoints.agis.ALL.json
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user   1560764 Dec  1 04:56 log.47556173._002590.job.log.tgz.1
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user      8585 Dec  1 04:56 heartbeat.json
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user       819 Dec  1 04:57 pilotlog.txt
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user   2324041 Dec  1 04:57 log.47556173._002590.job.log.1
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user       353 Dec  1 04:57 output.list
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user       620 Dec  1 04:57 runtime_log
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user   3901440 Dec  1 04:57 result.tar.gz
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user      9221 Dec  1 04:57 runtime_log.err
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user       649 Dec  1 04:57 75nNDmM0fi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfVKKDmcK5Byn.diag
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user     21713 Dec  1 04:57 stderr.txt
[2025-12-01 04:57:05] HITS file was successfully produced:
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user 912351008 Dec  1 04:56 shared/HITS.pool.root.1
[2025-12-01 04:57:05]  *** Contents of shared directory: ***
[2025-12-01 04:57:05] total 1295036
[2025-12-01 04:57:05] -rw-r--r-- 2 mf493845 unix-user 409249876 Dec  1 00:29 ATLAS.root_0
[2025-12-01 04:57:05] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 00:29 start_atlas.sh
[2025-12-01 04:57:05] -rw-r--r-- 2 mf493845 unix-user    590109 Dec  1 00:29 input.tar.gz
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user 912351008 Dec  1 04:56 HITS.pool.root.1
[2025-12-01 04:57:05] -rw------- 1 mf493845 unix-user   3901440 Dec  1 04:57 result.tar.gz
04:57:06 (27065): run_atlas exited; CPU time 121333.818212
04:57:06 (27065): called boinc_finish(0)

</stderr_txt>
]]>

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