Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:19:41 (8192): wrapper (7.7.26015): starting
00:19:41 (8192): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 00:19:41] Arguments: --nthreads 8
[2025-12-01 00:19:41] Threads: 8
[2025-12-01 00:19:41] Checking for CVMFS
[2025-12-01 00:19:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:19:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:19:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:19:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:19:41] 2.11.0.0 4234 72568 117688 153498 2 1 3312006 4096000 0 130560 1 7456372 99.672 4898434 533 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 00:19:41] CVMFS is ok
[2025-12-01 00:19:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:19:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:19:41] Further information can be found at the LHC@home message board.
[2025-12-01 00:19:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:19:41] Checking for apptainer binary...
[2025-12-01 00:19:41] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 00:19:41] apptainer is not installed, using version from CVMFS
[2025-12-01 00:19:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:19:51] WARNING: Environment variable TMPDIR already has value [/tmp/job_10937504/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node014
[2025-12-01 00:19:51] apptainer works
[2025-12-01 00:19:51] Set ATHENA_PROC_NUMBER=8
[2025-12-01 00:19:51] Set ATHENA_CORE_NUMBER=8
[2025-12-01 00:19:51] Starting ATLAS job with PandaID=6894245530
[2025-12-01 00:19:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10937504/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 04:44:52]  *** The last 200 lines of the pilot log: ***
[2025-12-01 04:44:52] 2025-12-01 03:44:16,483 | INFO     | number of running child processes to parent process 19075: 1
[2025-12-01 04:44:52] 2025-12-01 03:44:16,483 | INFO     | maximum number of monitored processes: 16
[2025-12-01 04:44:52] 2025-12-01 03:44:16,736 | INFO     | time since job start (15859s) is within the limit (172800.0s)
[2025-12-01 04:44:52] 2025-12-01 03:44:18,588 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 04:44:52] 2025-12-01 03:44:18,588 | INFO     | job 6894245530 has state=finished
[2025-12-01 04:44:52] 2025-12-01 03:44:18,588 | INFO     | preparing for final server update for job 6894245530 in state='finished'
[2025-12-01 04:44:52] 2025-12-01 03:44:18,588 | INFO     | this job has now completed (state=finished)
[2025-12-01 04:44:52] 2025-12-01 03:44:18,588 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-01 04:44:52] 2025-12-01 03:44:18,588 | INFO     | log transfer has been attempted: DONE
[2025-12-01 04:44:52] 2025-12-01 03:44:18,588 | INFO     | job 6894245530 has finished - writing final server update
[2025-12-01 04:44:52] 2025-12-01 03:44:18,589 | INFO     | total number of processed events: 1000 (read)
[2025-12-01 04:44:52] 2025-12-01 03:44:18,589 | INFO     | executing command: lscpu
[2025-12-01 04:44:52] 2025-12-01 03:44:18,621 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-01 04:44:52] 2025-12-01 03:44:18,742 | INFO     | time since job start (15861s) is within the limit (172800.0s)
[2025-12-01 04:44:52] 2025-12-01 03:44:18,985 | INFO     | monitor loop #1162: job 0:6894245530 is in state 'finished'
[2025-12-01 04:44:52] 2025-12-01 03:44:18,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,526 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 04:44:52] 2025-12-01 03:44:20,530 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3082.7894062500004
[2025-12-01 04:44:52] 2025-12-01 03:44:20,535 | INFO     | using path: /tmp/job_10937504/atlas/pilot/slots/0/PanDA_Pilot-6894245530/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,536 | INFO     | extracted standard info from prmon json
[2025-12-01 04:44:52] 2025-12-01 03:44:20,536 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 04:44:52] 2025-12-01 03:44:20,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 04:44:52] 2025-12-01 03:44:20,538 | INFO     | fitting pss+swap vs Time
[2025-12-01 04:44:52] 2025-12-01 03:44:20,538 | INFO     | sum of square deviations: 5449944045.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,539 | INFO     | sum of deviations: 1687913030101.4998
[2025-12-01 04:44:52] 2025-12-01 03:44:20,539 | INFO     | mean x: 1764552718.5
[2025-12-01 04:44:52] 2025-12-01 03:44:20,539 | INFO     | mean y: 4158573.434615385
[2025-12-01 04:44:52] 2025-12-01 03:44:20,539 | INFO     | intersect: -546498980039.4635
[2025-12-01 04:44:52] 2025-12-01 03:44:20,539 | INFO     | chi2: 9.744042992838311
[2025-12-01 04:44:52] 2025-12-01 03:44:20,540 | INFO     | sum of square deviations: 5141528960.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | sum of deviations: 1739429061109.9998
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | mean x: 1764552566.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | mean y: 4183577.231372549
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | intersect: -596961045450.0153
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | chi2: 9.346339087783683
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | current chi2=9.346339087783683 (change=4.081508110616234 %)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | right removable region: 254
[2025-12-01 04:44:52] 2025-12-01 03:44:20,541 | INFO     | sum of square deviations: 5141528960.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,542 | INFO     | sum of deviations: 1578354989682.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,542 | INFO     | mean x: 1764552871.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,542 | INFO     | mean y: 4212558.94117647
[2025-12-01 04:44:52] 2025-12-01 03:44:20,542 | INFO     | intersect: -541681120766.6049
[2025-12-01 04:44:52] 2025-12-01 03:44:20,542 | INFO     | chi2: 7.925084097302495
[2025-12-01 04:44:52] 2025-12-01 03:44:20,542 | INFO     | current chi2=7.925084097302495 (change=18.667393984947697 %)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,542 | INFO     | left removable region: 10
[2025-12-01 04:44:52] 2025-12-01 03:44:20,543 | INFO     | sum of square deviations: 4504437945.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,543 | INFO     | sum of deviations: 1546476488258.0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,543 | INFO     | mean x: 1764552840.5
[2025-12-01 04:44:52] 2025-12-01 03:44:20,543 | INFO     | mean y: 4261270.090163934
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | intersect: -605807054912.2484
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | chi2: 7.029308989905947
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | current memory leak: 343.32 B/s (using 244 data points, chi2=7.03)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | could have reported an average CPU frequency of 3028 MHz (12 samples)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | ..............................
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . Timing measurements:
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . get job = 0 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . initial setup = 1 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . payload setup = 5 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . stage-in = 0 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . payload execution = 15835 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . stage-out = 1 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | . log creation = 0 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,544 | INFO     | ..............................
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | 
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | job summary report
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | --------------------------------------------------
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | PanDA job id: 6894245530
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | task id: 47533962
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | errors: (none)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | pilot state: finished 
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | transexitcode: 0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | exeerrorcode: 0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | exeerrordiag: 
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | exitcode: 0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | exitmsg: OK
[2025-12-01 04:44:52] 2025-12-01 03:44:20,593 | INFO     | cpuconsumptiontime: 118746 s
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | nevents: 1000
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | neventsw: 0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | pid: 19075
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | pgrp: 19075
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | corecount: 8
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | event service: False
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 15845: 2316799, 15846: 2325879, 15851: 2326069}
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | --------------------------------------------------
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | 
[2025-12-01 04:44:52] 2025-12-01 03:44:20,594 | INFO     | executing command: ls -lF /tmp/job_10937504/atlas/pilot/slots/0
[2025-12-01 04:44:52] 2025-12-01 03:44:20,602 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,602 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,602 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,602 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,602 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | job 6894245530 has completed (purged errors)
[2025-12-01 04:44:52] 2025-12-01 03:44:20,603 | INFO     | overall cleanup function is called
[2025-12-01 04:44:52] 2025-12-01 03:44:21,611 | INFO     | --- collectZombieJob: --- 10, [19075]
[2025-12-01 04:44:52] 2025-12-01 03:44:21,611 | INFO     | zombie collector waiting for pid 19075
[2025-12-01 04:44:52] 2025-12-01 03:44:21,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 04:44:52] 2025-12-01 03:44:21,611 | INFO     | collected zombie processes
[2025-12-01 04:44:52] 2025-12-01 03:44:21,611 | INFO     | will attempt to kill all subprocesses of pid=19075
[2025-12-01 04:44:52] 2025-12-01 03:44:21,733 | INFO     | process IDs to be killed: [19075] (in reverse order)
[2025-12-01 04:44:52] 2025-12-01 03:44:21,780 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 04:44:52] 2025-12-01 03:44:21,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 04:44:52] 2025-12-01 03:44:21,784 | INFO     | did not find any defunct processes belonging to 19075
[2025-12-01 04:44:52] 2025-12-01 03:44:21,788 | INFO     | did not find any defunct processes belonging to 19075
[2025-12-01 04:44:52] 2025-12-01 03:44:21,789 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 04:44:52] 2025-12-01 03:44:21,789 | INFO     | ready for new job
[2025-12-01 04:44:52] 2025-12-01 03:44:21,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 04:44:52] 2025-12-01 03:44:21,790 | INFO     | ***************************************
[2025-12-01 04:44:52] 2025-12-01 03:44:21,790 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 04:44:52] 2025-12-01 03:44:21,790 | INFO     | ***************************************
[2025-12-01 04:44:52] 2025-12-01 03:44:21,790 | INFO     | 
[2025-12-01 04:44:52] 2025-12-01 03:44:21,803 | INFO     | architecture information:
[2025-12-01 04:44:52] 2025-12-01 03:44:21,803 | INFO     | executing command: cat /etc/os-release
[2025-12-01 04:44:52] 2025-12-01 03:44:21,809 | INFO     | cat /etc/os-release:
[2025-12-01 04:44:52] NAME="CentOS Linux"
[2025-12-01 04:44:52] VERSION="7 (Core)"
[2025-12-01 04:44:52] ID="centos"
[2025-12-01 04:44:52] ID_LIKE="rhel fedora"
[2025-12-01 04:44:52] VERSION_ID="7"
[2025-12-01 04:44:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 04:44:52] ANSI_COLOR="0;31"
[2025-12-01 04:44:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 04:44:52] HOME_URL="https://www.centos.org/"
[2025-12-01 04:44:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 04:44:52] 
[2025-12-01 04:44:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 04:44:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 04:44:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 04:44:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 04:44:52] 
[2025-12-01 04:44:52] 2025-12-01 03:44:21,809 | INFO     | ***************************************
[2025-12-01 04:44:52] 2025-12-01 03:44:22,312 | INFO     | executing command: df -mP /tmp/job_10937504/atlas/pilot/slots/0
[2025-12-01 04:44:52] 2025-12-01 03:44:22,317 | INFO     | sufficient remaining disk space (214143336448 B)
[2025-12-01 04:44:52] 2025-12-01 03:44:22,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 04:44:52] 2025-12-01 03:44:22,317 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 04:44:52] 2025-12-01 03:44:22,317 | INFO     | update_server=False
[2025-12-01 04:44:52] 2025-12-01 03:44:22,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 04:44:52] 2025-12-01 03:44:22,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:44:52] 2025-12-01 03:44:22,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 04:44:52] 2025-12-01 03:44:22,492 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:44:52] 2025-12-01 03:44:22,492 | INFO     | aborting loop
[2025-12-01 04:44:52] 2025-12-01 03:44:22,536 | INFO     | all payload control threads have been joined
[2025-12-01 04:44:52] 2025-12-01 03:44:23,257 | INFO     | [monitor] cgroup control has ended
[2025-12-01 04:44:52] 2025-12-01 03:44:23,323 | INFO     | [job] retrieve thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:23,323 | INFO     | [job] queue monitor thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:23,379 | INFO     | all data control threads have been joined
[2025-12-01 04:44:52] 2025-12-01 03:44:23,478 | INFO     | all job control threads have been joined
[2025-12-01 04:44:52] 2025-12-01 03:44:23,497 | INFO     | [job] job monitor thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:23,523 | INFO     | [payload] validate_post thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:23,541 | INFO     | [payload] control thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:23,656 | INFO     | [data] copytool_in thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:23,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 04:44:52] 2025-12-01 03:44:24,058 | INFO     | [payload] failed_post thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:24,127 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:24,283 | INFO     | [job] validate thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:24,384 | INFO     | [data] control thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:24,478 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:24,484 | INFO     | [job] control thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:24,504 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:25,715 | INFO     | [data] copytool_out thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:26,323 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:33,112 | INFO     | job.realtimelogging is not enabled
[2025-12-01 04:44:52] 2025-12-01 03:44:34,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 04:44:52] 2025-12-01 03:44:35,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-01 04:44:52] 2025-12-01 03:44:40,150 | INFO     | all workflow threads have been joined
[2025-12-01 04:44:52] 2025-12-01 03:44:40,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 04:44:52] 2025-12-01 03:44:40,150 | INFO     | traces error code: 0
[2025-12-01 04:44:52] 2025-12-01 03:44:40,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 04:44:52] 2025-12-01 03:44:51,954 | INFO     | PID=12189 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 04:44:52] 2025-12-01 03:44:51,954 | INFO     | .. there are 7 such processes running
[2025-12-01 04:44:52] 2025-12-01 03:44:51,955 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 04:44:52] 2025-12-01 03:44:51,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 04:44:52] 2025-12-01 03:44:51,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 04:44:52] 2025-12-01 03:44:51,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 04:44:52] 2025-12-01 03:44:51,955 | INFO     | [monitor] control thread has ended
[2025-12-01 04:44:52] 2025-12-01 03:44:52,009 [wrapper] ==== pilot stdout END ====
[2025-12-01 04:44:52] 2025-12-01 03:44:52,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 04:44:52] 2025-12-01 03:44:52,011 [wrapper] pilotpid: 12189
[2025-12-01 04:44:52] 2025-12-01 03:44:52,013 [wrapper] Pilot exit status: 0
[2025-12-01 04:44:52] 2025-12-01 03:44:52,016 [wrapper] pandaids: 6894245530
[2025-12-01 04:44:52] 2025-12-01 03:44:52,044 [wrapper] cleanup supervisor_pilot 27130 12190
[2025-12-01 04:44:52] 2025-12-01 03:44:52,045 [wrapper] Test setup, not cleaning
[2025-12-01 04:44:52] 2025-12-01 03:44:52,047 [wrapper] apfmon messages muted
[2025-12-01 04:44:52] 2025-12-01 03:44:52,048 [wrapper] ==== wrapper stdout END ====
[2025-12-01 04:44:52] 2025-12-01 03:44:52,049 [wrapper] ==== wrapper stderr END ====
[2025-12-01 04:44:52]  *** Error codes and diagnostics ***
[2025-12-01 04:44:52]     "exeErrorCode": 0,
[2025-12-01 04:44:52]     "exeErrorDiag": "",
[2025-12-01 04:44:52]     "pilotErrorCode": 0,
[2025-12-01 04:44:52]     "pilotErrorDiag": "",
[2025-12-01 04:44:52]  *** Listing of results directory ***
[2025-12-01 04:44:52] total 1289784
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user    576529 Nov 27 02:09 pilot3.tar.gz
[2025-12-01 04:44:52] -rwx------ 1 mf493845 unix-user     36292 Nov 27 02:28 runpilot2-wrapper.sh
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user      5112 Nov 27 02:31 queuedata.json
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user       100 Nov 30 22:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 04:44:52] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 22:35 run_atlas
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user       105 Nov 30 22:35 job.xml
[2025-12-01 04:44:52] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 00:19 start_atlas.sh
[2025-12-01 04:44:52] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 00:19 shared
[2025-12-01 04:44:52] -rw-r--r-- 2 mf493845 unix-user    590104 Dec  1 00:19 input.tar.gz
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user      6391 Dec  1 00:19 init_data.xml
[2025-12-01 04:44:52] -rw-r--r-- 2 mf493845 unix-user 407615535 Dec  1 00:19 EVNT.47493127._001022.pool.root.1
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user         0 Dec  1 00:19 boinc_setup_complete
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user      8192 Dec  1 00:19 boinc_mmap_file
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user         0 Dec  1 00:19 boinc_lockfile
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user      2787 Dec  1 00:19 pandaJob.out
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user    993245 Dec  1 00:19 agis_schedconf.cvmfs.json
[2025-12-01 04:44:52] drwx------ 5 mf493845 unix-user       440 Dec  1 00:19 pilot3
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user 901538045 Dec  1 04:43 HITS.47533962._000212.pool.root.1
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user        95 Dec  1 04:44 pilot_heartbeat.json
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user      1026 Dec  1 04:44 memory_monitor_summary.json
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user   1516240 Dec  1 04:44 agis_ddmendpoints.agis.ALL.json
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user   1558466 Dec  1 04:44 log.47533962._000212.job.log.tgz.1
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user      8577 Dec  1 04:44 heartbeat.json
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user       820 Dec  1 04:44 pilotlog.txt
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user   2289311 Dec  1 04:44 log.47533962._000212.job.log.1
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user       353 Dec  1 04:44 output.list
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user       620 Dec  1 04:44 runtime_log
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user   3870720 Dec  1 04:44 result.tar.gz
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user      9221 Dec  1 04:44 runtime_log.err
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user       651 Dec  1 04:44 lzMNDmlzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQdNKDmjFmwWm.diag
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user     22129 Dec  1 04:44 stderr.txt
[2025-12-01 04:44:52] HITS file was successfully produced:
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user 901538045 Dec  1 04:43 shared/HITS.pool.root.1
[2025-12-01 04:44:52]  *** Contents of shared directory: ***
[2025-12-01 04:44:52] total 1282852
[2025-12-01 04:44:52] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 00:19 start_atlas.sh
[2025-12-01 04:44:52] -rw-r--r-- 2 mf493845 unix-user    590104 Dec  1 00:19 input.tar.gz
[2025-12-01 04:44:52] -rw-r--r-- 2 mf493845 unix-user 407615535 Dec  1 00:19 ATLAS.root_0
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user 901538045 Dec  1 04:43 HITS.pool.root.1
[2025-12-01 04:44:52] -rw------- 1 mf493845 unix-user   3870720 Dec  1 04:44 result.tar.gz
04:44:54 (8192): run_atlas exited; CPU time 118973.774374
04:44:54 (8192): called boinc_finish(0)

</stderr_txt>
]]>

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