Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:56:28 (4918): wrapper (7.7.26015): starting
17:56:28 (4918): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:56:28] Arguments: --nthreads 8
[2025-12-02 17:56:28] Threads: 8
[2025-12-02 17:56:28] Checking for CVMFS
[2025-12-02 17:56:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:56:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:56:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:56:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:56:31] 2.11.2.0 31738 294113 137068 153562 1 85 24055790 25165825 2212 130560 10 126180440 99.874 81427448 2760 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 17:56:31] CVMFS is ok
[2025-12-02 17:56:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:56:31] Checking for apptainer binary...
[2025-12-02 17:56:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 17:56:31] Running /usr/bin/apptainer --version
[2025-12-02 17:56:31] apptainer version 1.3.2-1.el7
[2025-12-02 17:56:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:56:47] cg-vwn375.simple-grid.lan
[2025-12-02 17:56:47] apptainer works
[2025-12-02 17:56:47] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:56:47] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:56:47] Starting ATLAS job with PandaID=6893861453
[2025-12-02 17:56:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 17:30:54]  *** The last 200 lines of the pilot log: ***
[2025-12-03 17:30:54] 2025-12-03 16:29:51,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:30:54] 2025-12-03 16:29:53,292 | INFO     | time since job start (84576s) is within the limit (172800.0s)
[2025-12-03 17:30:54] 2025-12-03 16:29:54,073 | INFO     | monitor loop #5693: job 0:6893861453 is in state 'finished'
[2025-12-03 17:30:54] 2025-12-03 16:29:54,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:30:54] 2025-12-03 16:29:55,299 | INFO     | time since job start (84578s) is within the limit (172800.0s)
[2025-12-03 17:30:54] 2025-12-03 16:29:56,585 | INFO     | monitor loop #5694: job 0:6893861453 is in state 'finished'
[2025-12-03 17:30:54] 2025-12-03 16:29:56,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:30:54] 2025-12-03 16:29:57,314 | INFO     | time since job start (84580s) is within the limit (172800.0s)
[2025-12-03 17:30:54] 2025-12-03 16:29:59,089 | INFO     | monitor loop #5695: job 0:6893861453 is in state 'finished'
[2025-12-03 17:30:54] 2025-12-03 16:29:59,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:30:54] 2025-12-03 16:29:59,321 | INFO     | time since job start (84582s) is within the limit (172800.0s)
[2025-12-03 17:30:54] 2025-12-03 16:30:01,327 | INFO     | time since job start (84584s) is within the limit (172800.0s)
[2025-12-03 17:30:54] 2025-12-03 16:30:01,604 | INFO     | monitor loop #5696: job 0:6893861453 is in state 'finished'
[2025-12-03 17:30:54] 2025-12-03 16:30:01,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 17:30:54] 2025-12-03 16:30:01,752 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 17:30:54] 2025-12-03 16:30:01,753 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 17:30:54] 2025-12-03 16:30:01,755 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6893861453/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 17:30:54] 2025-12-03 16:30:01,755 | INFO     | extracted standard info from prmon json
[2025-12-03 17:30:54] 2025-12-03 16:30:01,756 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 17:30:54] 2025-12-03 16:30:01,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 17:30:54] 2025-12-03 16:30:01,798 | INFO     | fitting pss+swap vs Time
[2025-12-03 17:30:54] 2025-12-03 16:30:01,800 | INFO     | sum of square deviations: 809616133688.835
[2025-12-03 17:30:54] 2025-12-03 16:30:01,885 | INFO     | sum of deviations: 3054626122241.8364
[2025-12-03 17:30:54] 2025-12-03 16:30:01,886 | INFO     | mean x: 1764737300.090051
[2025-12-03 17:30:54] 2025-12-03 16:30:01,886 | INFO     | mean y: 2845918.557734205
[2025-12-03 17:30:54] 2025-12-03 16:30:01,886 | INFO     | intersect: -6655386830.817551
[2025-12-03 17:30:54] 2025-12-03 16:30:01,888 | INFO     | chi2: 21.67995731939513
[2025-12-03 17:30:54] 2025-12-03 16:30:01,890 | INFO     | sum of square deviations: 800829208122.8711
[2025-12-03 17:30:54] 2025-12-03 16:30:01,949 | INFO     | sum of deviations: 3509631562819.231
[2025-12-03 17:30:54] 2025-12-03 16:30:01,949 | INFO     | mean x: 1764737147.5940232
[2025-12-03 17:30:54] 2025-12-03 16:30:01,949 | INFO     | mean y: 2853814.3702623905
[2025-12-03 17:30:54] 2025-12-03 16:30:01,949 | INFO     | intersect: -7731101354.164604
[2025-12-03 17:30:54] 2025-12-03 16:30:01,951 | INFO     | chi2: 18.494815602301912
[2025-12-03 17:30:54] 2025-12-03 16:30:01,951 | INFO     | current chi2=18.494815602301912 (change=14.691642009109279 %)
[2025-12-03 17:30:54] 2025-12-03 16:30:01,951 | INFO     | right removable region: 1371
[2025-12-03 17:30:54] 2025-12-03 16:30:01,953 | INFO     | sum of square deviations: 800828292512.8711
[2025-12-03 17:30:54] 2025-12-03 16:30:02,009 | INFO     | sum of deviations: 2481295241350.3813
[2025-12-03 17:30:54] 2025-12-03 16:30:02,009 | INFO     | mean x: 1764737452.5940232
[2025-12-03 17:30:54] 2025-12-03 16:30:02,009 | INFO     | mean y: 2855867.4854227407
[2025-12-03 17:30:54] 2025-12-03 16:30:02,010 | INFO     | intersect: -5465026179.506525
[2025-12-03 17:30:54] 2025-12-03 16:30:02,011 | INFO     | chi2: 17.066698249670793
[2025-12-03 17:30:54] 2025-12-03 16:30:02,011 | INFO     | current chi2=17.066698249670793 (change=21.27891213880418 %)
[2025-12-03 17:30:54] 2025-12-03 16:30:02,012 | INFO     | left removable region: 10
[2025-12-03 17:30:54] 2025-12-03 16:30:02,014 | INFO     | sum of square deviations: 781720442537.5986
[2025-12-03 17:30:54] 2025-12-03 16:30:02,064 | INFO     | sum of deviations: 2523939876711.4824
[2025-12-03 17:30:54] 2025-12-03 16:30:02,065 | INFO     | mean x: 1764737422.1028655
[2025-12-03 17:30:54] 2025-12-03 16:30:02,065 | INFO     | mean y: 2874678.082292432
[2025-12-03 17:30:54] 2025-12-03 16:30:02,065 | INFO     | intersect: -5694930968.539537
[2025-12-03 17:30:54] 2025-12-03 16:30:02,066 | INFO     | chi2: 9.439277096426885
[2025-12-03 17:30:54] 2025-12-03 16:30:02,067 | INFO     | current memory leak: 3.23 B/s (using 1361 data points, chi2=9.44)
[2025-12-03 17:30:54] 2025-12-03 16:30:02,068 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | ..............................
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . Timing measurements:
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . get job = 0 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . initial setup = 6 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . payload setup = 157 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . stage-in = 0 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . payload execution = 84124 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . stage-out = 5 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | . log creation = 2 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,069 | INFO     | ..............................
[2025-12-03 17:30:54] 2025-12-03 16:30:02,184 | INFO     | 
[2025-12-03 17:30:54] 2025-12-03 16:30:02,184 | INFO     | job summary report
[2025-12-03 17:30:54] 2025-12-03 16:30:02,184 | INFO     | --------------------------------------------------
[2025-12-03 17:30:54] 2025-12-03 16:30:02,184 | INFO     | PanDA job id: 6893861453
[2025-12-03 17:30:54] 2025-12-03 16:30:02,184 | INFO     | task id: 47523449
[2025-12-03 17:30:54] 2025-12-03 16:30:02,184 | INFO     | errors: (none)
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | pilot state: finished 
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | transexitcode: 0
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | exeerrorcode: 0
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | exeerrordiag: 
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | exitcode: 0
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | exitmsg: OK
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | cpuconsumptiontime: 316482 s
[2025-12-03 17:30:54] 2025-12-03 16:30:02,185 | INFO     | nevents: 1000
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | neventsw: 0
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | pid: 15309
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | pgrp: 15309
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | corecount: 8
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | event service: False
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | sizes: {0: 2284143, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 45: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 87: 2284722, 98: 2285320, 84
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | --------------------------------------------------
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | 
[2025-12-03 17:30:54] 2025-12-03 16:30:02,186 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-03 17:30:54] 2025-12-03 16:30:02,528 | INFO     | PID=8731 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 17:30:54] 2025-12-03 16:30:02,528 | INFO     | .. there are 9 such processes running
[2025-12-03 17:30:54] 2025-12-03 16:30:02,749 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,749 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,749 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | job 6893861453 has completed (purged errors)
[2025-12-03 17:30:54] 2025-12-03 16:30:02,751 | INFO     | overall cleanup function is called
[2025-12-03 17:30:54] 2025-12-03 16:30:03,768 | INFO     | --- collectZombieJob: --- 10, [15309]
[2025-12-03 17:30:54] 2025-12-03 16:30:03,768 | INFO     | zombie collector waiting for pid 15309
[2025-12-03 17:30:54] 2025-12-03 16:30:03,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 17:30:54] 2025-12-03 16:30:03,768 | INFO     | collected zombie processes
[2025-12-03 17:30:54] 2025-12-03 16:30:03,768 | INFO     | will attempt to kill all subprocesses of pid=15309
[2025-12-03 17:30:54] 2025-12-03 16:30:03,907 | INFO     | process IDs to be killed: [15309] (in reverse order)
[2025-12-03 17:30:54] 2025-12-03 16:30:04,628 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 17:30:54] 2025-12-03 16:30:04,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 17:30:54] 2025-12-03 16:30:04,631 | INFO     | did not find any defunct processes belonging to 15309
[2025-12-03 17:30:54] 2025-12-03 16:30:04,634 | INFO     | did not find any defunct processes belonging to 15309
[2025-12-03 17:30:54] 2025-12-03 16:30:04,687 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 17:30:54] 2025-12-03 16:30:04,687 | INFO     | ready for new job
[2025-12-03 17:30:54] 2025-12-03 16:30:04,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 17:30:54] 2025-12-03 16:30:04,692 | INFO     | ***************************************
[2025-12-03 17:30:54] 2025-12-03 16:30:04,692 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 17:30:54] 2025-12-03 16:30:04,693 | INFO     | ***************************************
[2025-12-03 17:30:54] 2025-12-03 16:30:04,693 | INFO     | 
[2025-12-03 17:30:54] 2025-12-03 16:30:04,693 | INFO     | pilot is running in a VM
[2025-12-03 17:30:54] 2025-12-03 16:30:04,693 | INFO     | architecture information:
[2025-12-03 17:30:54] 2025-12-03 16:30:04,700 | INFO     | executing command: cat /etc/os-release
[2025-12-03 17:30:54] 2025-12-03 16:30:04,861 | INFO     | cat /etc/os-release:
[2025-12-03 17:30:54] NAME="CentOS Linux"
[2025-12-03 17:30:54] VERSION="7 (Core)"
[2025-12-03 17:30:54] ID="centos"
[2025-12-03 17:30:54] ID_LIKE="rhel fedora"
[2025-12-03 17:30:54] VERSION_ID="7"
[2025-12-03 17:30:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 17:30:54] ANSI_COLOR="0;31"
[2025-12-03 17:30:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 17:30:54] HOME_URL="https://www.centos.org/"
[2025-12-03 17:30:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 17:30:54] 
[2025-12-03 17:30:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 17:30:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 17:30:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 17:30:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 17:30:54] 
[2025-12-03 17:30:54] 2025-12-03 16:30:04,862 | INFO     | ***************************************
[2025-12-03 17:30:54] 2025-12-03 16:30:05,365 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-03 17:30:54] 2025-12-03 16:30:05,555 | INFO     | sufficient remaining disk space (490897145856 B)
[2025-12-03 17:30:54] 2025-12-03 16:30:05,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 17:30:54] 2025-12-03 16:30:05,556 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 17:30:54] 2025-12-03 16:30:05,556 | INFO     | update_server=False
[2025-12-03 17:30:54] 2025-12-03 16:30:05,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 17:30:54] 2025-12-03 16:30:05,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:30:54] 2025-12-03 16:30:05,558 | INFO     | aborting loop
[2025-12-03 17:30:54] 2025-12-03 16:30:05,712 | INFO     | all payload control threads have been joined
[2025-12-03 17:30:54] 2025-12-03 16:30:06,321 | INFO     | all job control threads have been joined
[2025-12-03 17:30:54] 2025-12-03 16:30:06,413 | INFO     | all data control threads have been joined
[2025-12-03 17:30:54] 2025-12-03 16:30:06,562 | INFO     | [job] retrieve thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:06,564 | INFO     | [job] job monitor thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:06,718 | INFO     | [payload] control thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,038 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 17:30:54] 2025-12-03 16:30:07,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 17:30:54] 2025-12-03 16:30:07,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 17:30:54] 2025-12-03 16:30:07,228 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,247 | INFO     | [data] copytool_in thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,287 | INFO     | [payload] validate_post thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,327 | INFO     | [job] control thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,348 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,419 | INFO     | [data] control thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,649 | INFO     | [job] validate thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,659 | INFO     | [payload] failed_post thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,874 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:07,943 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:08,206 | INFO     | [job] queue monitor thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:09,045 | INFO     | [data] copytool_out thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:11,117 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 17:30:54] 2025-12-03 16:30:34,712 | INFO     | PID=8731 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 17:30:54] 2025-12-03 16:30:34,713 | INFO     | .. there are 9 such processes running
[2025-12-03 17:30:54] 2025-12-03 16:30:34,713 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 17:30:54] 2025-12-03 16:30:34,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 17:30:54] 2025-12-03 16:30:34,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 17:30:54] 2025-12-03 16:30:44,485 | INFO     | [monitor] cgroup control has ended
[2025-12-03 17:30:54] 2025-12-03 16:30:44,491 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140200819070784)>', '<ExcThread(monitor, started 140200499975936)>']
[2025-12-03 17:30:54] 2025-12-03 16:30:44,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 17:30:54] 2025-12-03 16:30:44,773 | INFO     | [monitor] control thread has ended
[2025-12-03 17:30:54] 2025-12-03 16:30:49,517 | INFO     | all workflow threads have been joined
[2025-12-03 17:30:54] 2025-12-03 16:30:49,517 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 17:30:54] 2025-12-03 16:30:49,517 | INFO     | traces error code: 0
[2025-12-03 17:30:54] 2025-12-03 16:30:49,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 17:30:54] 2025-12-03 16:30:49,787 [wrapper] ==== pilot stdout END ====
[2025-12-03 17:30:54] 2025-12-03 16:30:49,858 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 17:30:54] 2025-12-03 16:30:49,955 [wrapper] pilotpid: 8731
[2025-12-03 17:30:54] 2025-12-03 16:30:50,050 [wrapper] Pilot exit status: 0
[2025-12-03 17:30:54] 2025-12-03 16:30:50,427 [wrapper] pandaids: 6893861453
[2025-12-03 17:30:54] 2025-12-03 16:30:51,173 [wrapper] cleanup supervisor_pilot 32412 8732
[2025-12-03 17:30:54] 2025-12-03 16:30:51,227 [wrapper] Test setup, not cleaning
[2025-12-03 17:30:54] 2025-12-03 16:30:51,319 [wrapper] apfmon messages muted
[2025-12-03 17:30:54] 2025-12-03 16:30:51,376 [wrapper] ==== wrapper stdout END ====
[2025-12-03 17:30:54] 2025-12-03 16:30:51,418 [wrapper] ==== wrapper stderr END ====
[2025-12-03 17:30:54]  *** Error codes and diagnostics ***
[2025-12-03 17:30:54]     "exeErrorCode": 0,
[2025-12-03 17:30:54]     "exeErrorDiag": "",
[2025-12-03 17:30:54]     "pilotErrorCode": 0,
[2025-12-03 17:30:54]     "pilotErrorDiag": "",
[2025-12-03 17:30:54]  *** Listing of results directory ***
[2025-12-03 17:30:54] total 1320396
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:54 queuedata.json
[2025-12-03 17:30:54] -rwx------. 1 boinc boinc     36292 Nov 20 14:56 runpilot2-wrapper.sh
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc       100 Dec  2 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 17:30:54] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 17:56 run_atlas
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc       105 Dec  2 17:56 job.xml
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc      6392 Dec  2 17:56 init_data.xml
[2025-12-03 17:30:54] -rw-r--r--. 2 boinc boinc 410971445 Dec  2 17:56 EVNT.47493127._000569.pool.root.1
[2025-12-03 17:30:54] -rw-r--r--. 2 boinc boinc     15847 Dec  2 17:56 start_atlas.sh
[2025-12-03 17:30:54] drwxrwx--x. 2 boinc boinc        68 Dec  2 17:56 shared
[2025-12-03 17:30:54] -rw-r--r--. 2 boinc boinc    590106 Dec  2 17:56 input.tar.gz
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc         0 Dec  2 17:56 boinc_lockfile
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc      2785 Dec  2 17:56 pandaJob.out
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc    988852 Dec  2 18:00 agis_schedconf.cvmfs.json
[2025-12-03 17:30:54] drwx------. 5 boinc boinc      4096 Dec  2 18:00 pilot3
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc       533 Dec  3 17:09 boinc_task_state.xml
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc 909773862 Dec  3 17:27 HITS.47523449._005683.pool.root.1
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc      1030 Dec  3 17:28 memory_monitor_summary.json
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc   1516240 Dec  3 17:28 agis_ddmendpoints.agis.ALL.json
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc   2453938 Dec  3 17:28 log.47523449._005683.job.log.tgz.1
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc        95 Dec  3 17:29 pilot_heartbeat.json
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc      7276 Dec  3 17:30 heartbeat.json
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc      8192 Dec  3 17:30 boinc_mmap_file
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc        29 Dec  3 17:30 wrapper_checkpoint.txt
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc      4883 Dec  3 17:30 pilotlog.txt
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc  11267692 Dec  3 17:30 log.47523449._005683.job.log.1
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc       353 Dec  3 17:30 output.list
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc       620 Dec  3 17:30 runtime_log
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc  13742080 Dec  3 17:30 result.tar.gz
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc      8817 Dec  3 17:30 runtime_log.err
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc       662 Dec  3 17:30 eNBMDmKKKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSlGKDmJXCIZn.diag
[2025-12-03 17:30:54] -rw-r--r--. 1 boinc boinc     21517 Dec  3 17:30 stderr.txt
[2025-12-03 17:30:54] HITS file was successfully produced:
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc 909773862 Dec  3 17:27 shared/HITS.pool.root.1
[2025-12-03 17:30:54]  *** Contents of shared directory: ***
[2025-12-03 17:30:54] total 1303808
[2025-12-03 17:30:54] -rw-r--r--. 2 boinc boinc 410971445 Dec  2 17:56 ATLAS.root_0
[2025-12-03 17:30:54] -rw-r--r--. 2 boinc boinc     15847 Dec  2 17:56 start_atlas.sh
[2025-12-03 17:30:54] -rw-r--r--. 2 boinc boinc    590106 Dec  2 17:56 input.tar.gz
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc 909773862 Dec  3 17:27 HITS.pool.root.1
[2025-12-03 17:30:54] -rw-------. 1 boinc boinc  13742080 Dec  3 17:30 result.tar.gz
17:30:56 (4918): run_atlas exited; CPU time 317078.498242
17:30:56 (4918): called boinc_finish(0)

</stderr_txt>
]]>

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