Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:20:17 (22790): wrapper (7.7.26015): starting
00:20:17 (22790): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 00:20:17] Arguments: --nthreads 8
[2025-12-01 00:20:17] Threads: 8
[2025-12-01 00:20:17] Checking for CVMFS
[2025-12-01 00:20:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:20:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:20:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:20:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:20:18] 2.11.0.0 4234 72568 118620 153498 1 64 3389648 4096000 192 130560 1 7493728 99.674 4919282 534 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 00:20:18] CVMFS is ok
[2025-12-01 00:20:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:20:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:20:18] Further information can be found at the LHC@home message board.
[2025-12-01 00:20:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:20:18] Checking for apptainer binary...
[2025-12-01 00:20:18] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 00:20:18] apptainer is not installed, using version from CVMFS
[2025-12-01 00:20:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:20:18] WARNING: Environment variable TMPDIR already has value [/tmp/job_10937500/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node014
[2025-12-01 00:20:18] apptainer works
[2025-12-01 00:20:23] Set ATHENA_PROC_NUMBER=8
[2025-12-01 00:20:23] Set ATHENA_CORE_NUMBER=8
[2025-12-01 00:20:23] Starting ATLAS job with PandaID=6896713884
[2025-12-01 00:20:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10937500/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 04:44:18]  *** The last 200 lines of the pilot log: ***
[2025-12-01 04:44:18] 2025-12-01 03:43:45,180 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-01 04:44:18] 2025-12-01 03:43:46,942 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 04:44:18] 2025-12-01 03:43:46,946 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3114.2555156250014
[2025-12-01 04:44:18] 2025-12-01 03:43:46,951 | INFO     | using path: /tmp/job_10937500/atlas/pilot/slots/0/PanDA_Pilot-6896713884/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 04:44:18] 2025-12-01 03:43:46,952 | INFO     | extracted standard info from prmon json
[2025-12-01 04:44:18] 2025-12-01 03:43:46,952 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 04:44:18] 2025-12-01 03:43:46,952 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 04:44:18] 2025-12-01 03:43:46,954 | INFO     | fitting pss+swap vs Time
[2025-12-01 04:44:18] 2025-12-01 03:43:46,955 | INFO     | sum of square deviations: 5387301010.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,955 | INFO     | sum of deviations: 145050310950.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,955 | INFO     | mean x: 1764552715.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,956 | INFO     | mean y: 2913417.1544401543
[2025-12-01 04:44:18] 2025-12-01 03:43:46,956 | INFO     | intersect: -47506761561.71159
[2025-12-01 04:44:18] 2025-12-01 03:43:46,956 | INFO     | chi2: 3.039335738019034
[2025-12-01 04:44:18] 2025-12-01 03:43:46,956 | INFO     | sum of square deviations: 5081276667.5
[2025-12-01 04:44:18] 2025-12-01 03:43:46,957 | INFO     | sum of deviations: 193130793105.49997
[2025-12-01 04:44:18] 2025-12-01 03:43:46,957 | INFO     | mean x: 1764552562.5
[2025-12-01 04:44:18] 2025-12-01 03:43:46,957 | INFO     | mean y: 2937193.783464567
[2025-12-01 04:44:18] 2025-12-01 03:43:46,957 | INFO     | intersect: -67064742480.43442
[2025-12-01 04:44:18] 2025-12-01 03:43:46,957 | INFO     | chi2: 1.5230144390823526
[2025-12-01 04:44:18] 2025-12-01 03:43:46,957 | INFO     | current chi2=1.5230144390823526 (change=49.88989139860485 %)
[2025-12-01 04:44:18] 2025-12-01 03:43:46,957 | INFO     | sum of square deviations: 4787066500.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,958 | INFO     | sum of deviations: 171496180556.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,958 | INFO     | mean x: 1764552410.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,958 | INFO     | mean y: 2925985.807228916
[2025-12-01 04:44:18] 2025-12-01 03:43:46,958 | INFO     | intersect: -63211988347.612816
[2025-12-01 04:44:18] 2025-12-01 03:43:46,959 | INFO     | chi2: 1.4777752731623748
[2025-12-01 04:44:18] 2025-12-01 03:43:46,959 | INFO     | current chi2=1.4777752731623748 (change=2.9703701264470816 %)
[2025-12-01 04:44:18] 2025-12-01 03:43:46,959 | INFO     | right removable region: 248
[2025-12-01 04:44:18] 2025-12-01 03:43:46,959 | INFO     | sum of square deviations: 5081276667.5
[2025-12-01 04:44:18] 2025-12-01 03:43:46,960 | INFO     | sum of deviations: 95549680322.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,960 | INFO     | mean x: 1764552867.5
[2025-12-01 04:44:18] 2025-12-01 03:43:46,960 | INFO     | mean y: 2937898.692913386
[2025-12-01 04:44:18] 2025-12-01 03:43:46,960 | INFO     | intersect: -33178184373.05424
[2025-12-01 04:44:18] 2025-12-01 03:43:46,960 | INFO     | chi2: 1.6709380867179746
[2025-12-01 04:44:18] 2025-12-01 03:43:46,960 | INFO     | current chi2=1.6709380867179746 (change=45.022918468130406 %)
[2025-12-01 04:44:18] 2025-12-01 03:43:46,960 | INFO     | sum of square deviations: 4787066500.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,961 | INFO     | sum of deviations: 81902033811.99998
[2025-12-01 04:44:18] 2025-12-01 03:43:46,961 | INFO     | mean x: 1764553020.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,961 | INFO     | mean y: 2944968.4176706825
[2025-12-01 04:44:18] 2025-12-01 03:43:46,961 | INFO     | intersect: -30186834326.92044
[2025-12-01 04:44:18] 2025-12-01 03:43:46,961 | INFO     | chi2: 1.6499596495964826
[2025-12-01 04:44:18] 2025-12-01 03:43:46,961 | INFO     | current chi2=1.6499596495964826 (change=1.2554885957921702 %)
[2025-12-01 04:44:18] 2025-12-01 03:43:46,961 | INFO     | left removable region: 20
[2025-12-01 04:44:18] 2025-12-01 03:43:46,962 | INFO     | sum of square deviations: 3675146117.0
[2025-12-01 04:44:18] 2025-12-01 03:43:46,962 | INFO     | sum of deviations: 85632254693.99998
[2025-12-01 04:44:18] 2025-12-01 03:43:46,962 | INFO     | mean x: 1764552989.5
[2025-12-01 04:44:18] 2025-12-01 03:43:46,962 | INFO     | mean y: 2969937.8771929825
[2025-12-01 04:44:18] 2025-12-01 03:43:46,962 | INFO     | intersect: -41111762975.454506
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | chi2: 0.038360991910023165
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | current memory leak: 23.30 B/s (using 228 data points, chi2=0.04)
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | could have reported an average CPU frequency of 3035 MHz (12 samples)
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | ..............................
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . Timing measurements:
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . get job = 0 s
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . initial setup = 1 s
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . payload setup = 2 s
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . stage-in = 0 s
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . payload execution = 15771 s
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . stage-out = 1 s
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | . log creation = 0 s
[2025-12-01 04:44:18] 2025-12-01 03:43:46,963 | INFO     | ..............................
[2025-12-01 04:44:18] 2025-12-01 03:43:47,011 | INFO     | 
[2025-12-01 04:44:18] 2025-12-01 03:43:47,011 | INFO     | job summary report
[2025-12-01 04:44:18] 2025-12-01 03:43:47,011 | INFO     | --------------------------------------------------
[2025-12-01 04:44:18] 2025-12-01 03:43:47,011 | INFO     | PanDA job id: 6896713884
[2025-12-01 04:44:18] 2025-12-01 03:43:47,011 | INFO     | task id: 47556173
[2025-12-01 04:44:18] 2025-12-01 03:43:47,011 | INFO     | errors: (none)
[2025-12-01 04:44:18] 2025-12-01 03:43:47,011 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | pilot state: finished 
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | transexitcode: 0
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | exeerrorcode: 0
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | exeerrordiag: 
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | exitcode: 0
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | exitmsg: OK
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | cpuconsumptiontime: 118827 s
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | nevents: 1000
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | neventsw: 0
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | pid: 6690
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | pgrp: 6690
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | corecount: 8
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | event service: False
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | sizes: {0: 2284101, 1: 2284467, 3: 2284729, 11: 2284757, 15778: 2317088, 15780: 2326112, 15782: 2326296, 15786: 2326542}
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | --------------------------------------------------
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | 
[2025-12-01 04:44:18] 2025-12-01 03:43:47,012 | INFO     | executing command: ls -lF /tmp/job_10937500/atlas/pilot/slots/0
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | job 6896713884 has completed (purged errors)
[2025-12-01 04:44:18] 2025-12-01 03:43:47,022 | INFO     | overall cleanup function is called
[2025-12-01 04:44:18] 2025-12-01 03:43:48,029 | INFO     | --- collectZombieJob: --- 10, [6690]
[2025-12-01 04:44:18] 2025-12-01 03:43:48,029 | INFO     | zombie collector waiting for pid 6690
[2025-12-01 04:44:18] 2025-12-01 03:43:48,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 04:44:18] 2025-12-01 03:43:48,029 | INFO     | collected zombie processes
[2025-12-01 04:44:18] 2025-12-01 03:43:48,029 | INFO     | will attempt to kill all subprocesses of pid=6690
[2025-12-01 04:44:18] 2025-12-01 03:43:48,158 | INFO     | process IDs to be killed: [6690] (in reverse order)
[2025-12-01 04:44:18] 2025-12-01 03:43:48,208 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 04:44:18] 2025-12-01 03:43:48,208 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 04:44:18] 2025-12-01 03:43:48,213 | INFO     | did not find any defunct processes belonging to 6690
[2025-12-01 04:44:18] 2025-12-01 03:43:48,216 | INFO     | did not find any defunct processes belonging to 6690
[2025-12-01 04:44:18] 2025-12-01 03:43:48,217 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 04:44:18] 2025-12-01 03:43:48,217 | INFO     | ready for new job
[2025-12-01 04:44:18] 2025-12-01 03:43:48,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 04:44:18] 2025-12-01 03:43:48,218 | INFO     | ***************************************
[2025-12-01 04:44:18] 2025-12-01 03:43:48,218 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 04:44:18] 2025-12-01 03:43:48,218 | INFO     | ***************************************
[2025-12-01 04:44:18] 2025-12-01 03:43:48,218 | INFO     | 
[2025-12-01 04:44:18] 2025-12-01 03:43:48,232 | INFO     | architecture information:
[2025-12-01 04:44:18] 2025-12-01 03:43:48,232 | INFO     | executing command: cat /etc/os-release
[2025-12-01 04:44:18] 2025-12-01 03:43:48,238 | INFO     | cat /etc/os-release:
[2025-12-01 04:44:18] NAME="CentOS Linux"
[2025-12-01 04:44:18] VERSION="7 (Core)"
[2025-12-01 04:44:18] ID="centos"
[2025-12-01 04:44:18] ID_LIKE="rhel fedora"
[2025-12-01 04:44:18] VERSION_ID="7"
[2025-12-01 04:44:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 04:44:18] ANSI_COLOR="0;31"
[2025-12-01 04:44:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 04:44:18] HOME_URL="https://www.centos.org/"
[2025-12-01 04:44:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 04:44:18] 
[2025-12-01 04:44:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 04:44:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 04:44:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 04:44:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 04:44:18] 
[2025-12-01 04:44:18] 2025-12-01 03:43:48,238 | INFO     | ***************************************
[2025-12-01 04:44:18] 2025-12-01 03:43:48,740 | INFO     | executing command: df -mP /tmp/job_10937500/atlas/pilot/slots/0
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | INFO     | sufficient remaining disk space (213279309824 B)
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | INFO     | update_server=False
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:44:18] 2025-12-01 03:43:48,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 04:44:18] 2025-12-01 03:43:48,747 | INFO     | aborting loop
[2025-12-01 04:44:18] 2025-12-01 03:43:48,824 | INFO     | all payload control threads have been joined
[2025-12-01 04:44:18] 2025-12-01 03:43:49,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 04:44:18] 2025-12-01 03:43:49,332 | INFO     | all data control threads have been joined
[2025-12-01 04:44:18] 2025-12-01 03:43:49,396 | INFO     | all job control threads have been joined
[2025-12-01 04:44:18] 2025-12-01 03:43:49,751 | INFO     | [job] retrieve thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:49,752 | INFO     | [job] queue monitor thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:49,752 | INFO     | [job] job monitor thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:49,830 | INFO     | [payload] control thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,239 | INFO     | [job] validate thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,239 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,250 | INFO     | [payload] failed_post thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,335 | INFO     | [data] control thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,401 | INFO     | [job] control thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,534 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,875 | INFO     | [data] copytool_in thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:50,928 | INFO     | [payload] validate_post thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:51,059 | INFO     | [data] copytool_out thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:51,154 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:52,752 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:43:53,944 | INFO     | [monitor] cgroup control has ended
[2025-12-01 04:44:18] 2025-12-01 03:43:59,037 | INFO     | job.realtimelogging is not enabled
[2025-12-01 04:44:18] 2025-12-01 03:44:00,042 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 04:44:18] 2025-12-01 03:44:00,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-01 04:44:18] 2025-12-01 03:44:05,657 | INFO     | all workflow threads have been joined
[2025-12-01 04:44:18] 2025-12-01 03:44:05,657 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 04:44:18] 2025-12-01 03:44:05,657 | INFO     | traces error code: 0
[2025-12-01 04:44:18] 2025-12-01 03:44:05,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 04:44:18] 2025-12-01 03:44:18,328 | INFO     | PID=29506 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 04:44:18] 2025-12-01 03:44:18,328 | INFO     | .. there are 8 such processes running
[2025-12-01 04:44:18] 2025-12-01 03:44:18,329 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 04:44:18] 2025-12-01 03:44:18,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 04:44:18] 2025-12-01 03:44:18,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 04:44:18] 2025-12-01 03:44:18,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 04:44:18] 2025-12-01 03:44:18,329 | CRITICAL | thread 'MainThread' is not alive
[2025-12-01 04:44:18] 2025-12-01 03:44:18,329 | INFO     | [monitor] control thread has ended
[2025-12-01 04:44:18] 2025-12-01 03:44:18,384 [wrapper] ==== pilot stdout END ====
[2025-12-01 04:44:18] 2025-12-01 03:44:18,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 04:44:18] 2025-12-01 03:44:18,387 [wrapper] pilotpid: 29506
[2025-12-01 04:44:18] 2025-12-01 03:44:18,388 [wrapper] Pilot exit status: 0
[2025-12-01 04:44:18] 2025-12-01 03:44:18,392 [wrapper] pandaids: 6896713884
[2025-12-01 04:44:18] 2025-12-01 03:44:18,419 [wrapper] cleanup supervisor_pilot 27177 29507
[2025-12-01 04:44:18] 2025-12-01 03:44:18,420 [wrapper] Test setup, not cleaning
[2025-12-01 04:44:18] 2025-12-01 03:44:18,422 [wrapper] apfmon messages muted
[2025-12-01 04:44:18] 2025-12-01 03:44:18,423 [wrapper] ==== wrapper stdout END ====
[2025-12-01 04:44:18] 2025-12-01 03:44:18,424 [wrapper] ==== wrapper stderr END ====
[2025-12-01 04:44:18]  *** Error codes and diagnostics ***
[2025-12-01 04:44:18]     "exeErrorCode": 0,
[2025-12-01 04:44:18]     "exeErrorDiag": "",
[2025-12-01 04:44:18]     "pilotErrorCode": 0,
[2025-12-01 04:44:18]     "pilotErrorDiag": "",
[2025-12-01 04:44:18]  *** Listing of results directory ***
[2025-12-01 04:44:18] total 1301856
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user    576529 Nov 25 07:04 pilot3.tar.gz
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user      5112 Nov 25 07:21 queuedata.json
[2025-12-01 04:44:18] -rwx------ 1 mf493845 unix-user     36292 Nov 25 07:24 runpilot2-wrapper.sh
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user       100 Nov 30 22:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 04:44:18] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 22:36 run_atlas
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user       105 Nov 30 22:36 job.xml
[2025-12-01 04:44:18] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 00:20 start_atlas.sh
[2025-12-01 04:44:18] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 00:20 shared
[2025-12-01 04:44:18] -rw-r--r-- 2 mf493845 unix-user    590104 Dec  1 00:20 input.tar.gz
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user      6391 Dec  1 00:20 init_data.xml
[2025-12-01 04:44:18] -rw-r--r-- 2 mf493845 unix-user 409221621 Dec  1 00:20 EVNT.47483658._003069.pool.root.1
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user         0 Dec  1 00:20 boinc_setup_complete
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user      8192 Dec  1 00:20 boinc_mmap_file
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user         0 Dec  1 00:20 boinc_lockfile
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user      2785 Dec  1 00:20 pandaJob.out
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user    993245 Dec  1 00:20 agis_schedconf.cvmfs.json
[2025-12-01 04:44:18] drwx------ 5 mf493845 unix-user       440 Dec  1 00:20 pilot3
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user 912289248 Dec  1 04:43 HITS.47556173._000520.pool.root.1
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user        95 Dec  1 04:43 pilot_heartbeat.json
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user      1026 Dec  1 04:43 memory_monitor_summary.json
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user   1516240 Dec  1 04:43 agis_ddmendpoints.agis.ALL.json
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user   1559893 Dec  1 04:43 log.47556173._000520.job.log.tgz.1
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user      8587 Dec  1 04:43 heartbeat.json
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user       890 Dec  1 04:44 pilotlog.txt
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user   2295790 Dec  1 04:44 log.47556173._000520.job.log.1
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user       353 Dec  1 04:44 output.list
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user       620 Dec  1 04:44 runtime_log
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user   3870720 Dec  1 04:44 result.tar.gz
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user      9221 Dec  1 04:44 runtime_log.err
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user       650 Dec  1 04:44 kh3NDm5e1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaCMKDmw1H0em.diag
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user     21746 Dec  1 04:44 stderr.txt
[2025-12-01 04:44:18] HITS file was successfully produced:
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user 912289248 Dec  1 04:43 shared/HITS.pool.root.1
[2025-12-01 04:44:18]  *** Contents of shared directory: ***
[2025-12-01 04:44:18] total 1294916
[2025-12-01 04:44:18] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 00:20 start_atlas.sh
[2025-12-01 04:44:18] -rw-r--r-- 2 mf493845 unix-user    590104 Dec  1 00:20 input.tar.gz
[2025-12-01 04:44:18] -rw-r--r-- 2 mf493845 unix-user 409221621 Dec  1 00:20 ATLAS.root_0
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user 912289248 Dec  1 04:43 HITS.pool.root.1
[2025-12-01 04:44:18] -rw------- 1 mf493845 unix-user   3870720 Dec  1 04:44 result.tar.gz
04:44:20 (22790): run_atlas exited; CPU time 119049.479863
04:44:20 (22790): called boinc_finish(0)

</stderr_txt>
]]>

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