Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:18:13 (152521): wrapper (7.7.26015): starting
14:18:13 (152521): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 14:18:13] Arguments: --nthreads 12
[2025-11-30 14:18:13] Threads: 12
[2025-11-30 14:18:13] Checking for CVMFS
[2025-11-30 14:18:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 14:18:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 14:18:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 14:18:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 14:18:14] 2.13.3.0 122604 34 41624 153492 3 17 183010 37030913 85 16776704 0 9972 93.893 48076 11971 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 14:18:14] CVMFS is ok
[2025-11-30 14:18:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 14:18:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 14:18:14] Further information can be found at the LHC@home message board.
[2025-11-30 14:18:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 14:18:14] Checking for apptainer binary...
[2025-11-30 14:18:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 14:18:14] Running /usr/bin/apptainer --version
[2025-11-30 14:18:14] apptainer version 1.4.4-1.el9
[2025-11-30 14:18:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 14:18:14] c-205-36.aglt2.org
[2025-11-30 14:18:14] apptainer works
[2025-11-30 14:18:14] Set ATHENA_PROC_NUMBER=12
[2025-11-30 14:18:14] Set ATHENA_CORE_NUMBER=12
[2025-11-30 14:18:14] Starting ATLAS job with PandaID=6893861433
[2025-11-30 14:18:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:55:47 (4066): wrapper (7.7.26015): starting
15:55:47 (4066): wrapper: running run_atlas (--nthreads 9)
[2025-11-30 15:55:47] Arguments: --nthreads 9
[2025-11-30 15:55:47] Threads: 9
[2025-11-30 15:55:47] This job has been restarted, cleaning up previous attempt
[2025-11-30 15:55:47] Checking for CVMFS
[2025-11-30 15:55:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 15:55:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 15:55:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 15:55:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 15:55:50] 2.13.3.0 4548 0 30192 153493 4 1 1256173 37030913 0 16776704 0 0 100.000 0 0 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 15:55:50] CVMFS is ok
[2025-11-30 15:55:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 15:55:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 15:55:50] Further information can be found at the LHC@home message board.
[2025-11-30 15:55:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 15:55:50] Checking for apptainer binary...
[2025-11-30 15:55:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 15:55:50] Running /usr/bin/apptainer --version
[2025-11-30 15:55:52] apptainer version 1.4.4-1.el9
[2025-11-30 15:55:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 15:55:53] c-205-36.aglt2.org
[2025-11-30 15:55:53] apptainer works
[2025-11-30 15:55:53] Set ATHENA_PROC_NUMBER=9
[2025-11-30 15:55:53] Set ATHENA_CORE_NUMBER=9
[2025-11-30 15:55:53] Starting ATLAS job with PandaID=6893861433
[2025-11-30 15:55:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 03:44:27]  *** The last 200 lines of the pilot log: ***
[2025-12-01 03:44:27] 2025-12-01 08:43:53,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:44:27] 2025-12-01 08:43:54,343 | INFO     | time since job start (42473s) is within the limit (172800.0s)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,622 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 03:44:27] 2025-12-01 08:43:55,626 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2768.8905
[2025-12-01 03:44:27] 2025-12-01 08:43:55,629 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893861433/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,630 | INFO     | extracted standard info from prmon json
[2025-12-01 03:44:27] 2025-12-01 08:43:55,630 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 03:44:27] 2025-12-01 08:43:55,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 03:44:27] 2025-12-01 08:43:55,637 | INFO     | fitting pss+swap vs Time
[2025-12-01 03:44:27] 2025-12-01 08:43:55,637 | INFO     | sum of square deviations: 104541601967.30461
[2025-12-01 03:44:27] 2025-12-01 08:43:55,644 | INFO     | sum of deviations: 1322035358692.2026
[2025-12-01 03:44:27] 2025-12-01 08:43:55,644 | INFO     | mean x: 1764557381.0316093
[2025-12-01 03:44:27] 2025-12-01 08:43:55,644 | INFO     | mean y: 3110705.8089080458
[2025-12-01 03:44:27] 2025-12-01 08:43:55,644 | INFO     | intersect: -22311520084.85645
[2025-12-01 03:44:27] 2025-12-01 08:43:55,645 | INFO     | chi2: 3.417444771894939
[2025-12-01 03:44:27] 2025-12-01 08:43:55,646 | INFO     | sum of square deviations: 102304724035.88116
[2025-12-01 03:44:27] 2025-12-01 08:43:55,652 | INFO     | sum of deviations: 1459718107260.8533
[2025-12-01 03:44:27] 2025-12-01 08:43:55,652 | INFO     | mean x: 1764557228.535456
[2025-12-01 03:44:27] 2025-12-01 08:43:55,652 | INFO     | mean y: 3120066.7814761214
[2025-12-01 03:44:27] 2025-12-01 08:43:55,653 | INFO     | intersect: -25174174159.512924
[2025-12-01 03:44:27] 2025-12-01 08:43:55,653 | INFO     | chi2: 1.981991303325116
[2025-12-01 03:44:27] 2025-12-01 08:43:55,653 | INFO     | current chi2=1.981991303325116 (change=42.003706405879335 %)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,654 | INFO     | sum of square deviations: 100099986241.93747
[2025-12-01 03:44:27] 2025-12-01 08:43:55,660 | INFO     | sum of deviations: 1437580397448.0679
[2025-12-01 03:44:27] 2025-12-01 08:43:55,660 | INFO     | mean x: 1764557076.0393586
[2025-12-01 03:44:27] 2025-12-01 08:43:55,660 | INFO     | mean y: 3118535.701166181
[2025-12-01 03:44:27] 2025-12-01 08:43:55,660 | INFO     | intersect: -25338469989.210133
[2025-12-01 03:44:27] 2025-12-01 08:43:55,661 | INFO     | chi2: 1.9790090889368495
[2025-12-01 03:44:27] 2025-12-01 08:43:55,661 | INFO     | current chi2=1.9790090889368495 (change=0.15046556376223036 %)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,661 | INFO     | right removable region: 685
[2025-12-01 03:44:27] 2025-12-01 08:43:55,662 | INFO     | sum of square deviations: 102304498335.88126
[2025-12-01 03:44:27] 2025-12-01 08:43:55,668 | INFO     | sum of deviations: 1143398694203.1497
[2025-12-01 03:44:27] 2025-12-01 08:43:55,668 | INFO     | mean x: 1764557533.535456
[2025-12-01 03:44:27] 2025-12-01 08:43:55,668 | INFO     | mean y: 3122857.034732272
[2025-12-01 03:44:27] 2025-12-01 08:43:55,669 | INFO     | intersect: -19718324513.40939
[2025-12-01 03:44:27] 2025-12-01 08:43:55,669 | INFO     | chi2: 1.644782207126537
[2025-12-01 03:44:27] 2025-12-01 08:43:55,669 | INFO     | current chi2=1.644782207126537 (change=51.870993771333964 %)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,670 | INFO     | sum of square deviations: 100099534841.93735
[2025-12-01 03:44:27] 2025-12-01 08:43:55,676 | INFO     | sum of deviations: 1089204311019.2589
[2025-12-01 03:44:27] 2025-12-01 08:43:55,676 | INFO     | mean x: 1764557686.0393586
[2025-12-01 03:44:27] 2025-12-01 08:43:55,676 | INFO     | mean y: 3126603.95335277
[2025-12-01 03:44:27] 2025-12-01 08:43:55,677 | INFO     | intersect: -19197400568.436844
[2025-12-01 03:44:27] 2025-12-01 08:43:55,677 | INFO     | chi2: 1.6004740713873034
[2025-12-01 03:44:27] 2025-12-01 08:43:55,677 | INFO     | current chi2=1.6004740713873034 (change=2.6938603510698678 %)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,677 | INFO     | left removable region: 20
[2025-12-01 03:44:27] 2025-12-01 08:43:55,678 | INFO     | sum of square deviations: 91184989864.35475
[2025-12-01 03:44:27] 2025-12-01 08:43:55,684 | INFO     | sum of deviations: 1120182815421.4033
[2025-12-01 03:44:27] 2025-12-01 08:43:55,684 | INFO     | mean x: 1764557655.5533834
[2025-12-01 03:44:27] 2025-12-01 08:43:55,684 | INFO     | mean y: 3140528.5097744362
[2025-12-01 03:44:27] 2025-12-01 08:43:55,684 | INFO     | intersect: -21673970644.19066
[2025-12-01 03:44:27] 2025-12-01 08:43:55,685 | INFO     | chi2: 0.13135551032474593
[2025-12-01 03:44:27] 2025-12-01 08:43:55,685 | INFO     | current memory leak: 12.28 B/s (using 665 data points, chi2=0.13)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,685 | INFO     | could have reported an average CPU frequency of 2625 MHz (27 samples)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,685 | INFO     | ..............................
[2025-12-01 03:44:27] 2025-12-01 08:43:55,685 | INFO     | . Timing measurements:
[2025-12-01 03:44:27] 2025-12-01 08:43:55,685 | INFO     | . get job = 0 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,686 | INFO     | . initial setup = 1 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,686 | INFO     | . payload setup = 4 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,686 | INFO     | . stage-in = 0 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,686 | INFO     | . payload execution = 42447 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,686 | INFO     | . stage-out = 2 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,686 | INFO     | . log creation = 0 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,686 | INFO     | ..............................
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | 
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | job summary report
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | --------------------------------------------------
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | PanDA job id: 6893861433
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | task id: 47523449
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | errors: (none)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | pilot state: finished 
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | transexitcode: 0
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | exeerrorcode: 0
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | exeerrordiag: 
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | exitcode: 0
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | exitmsg: OK
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | cpuconsumptiontime: 325758 s
[2025-12-01 03:44:27] 2025-12-01 08:43:55,740 | INFO     | nevents: 1000
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | neventsw: 0
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | pid: 36603
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | pgrp: 36603
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | corecount: 9
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | event service: False
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | sizes: {0: 2284315, 2: 2284577, 11: 2284605, 42455: 2328801, 42458: 2337851, 42461: 2338041}
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | --------------------------------------------------
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | 
[2025-12-01 03:44:27] 2025-12-01 08:43:55,741 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,752 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | job 6893861433 has completed (purged errors)
[2025-12-01 03:44:27] 2025-12-01 08:43:55,753 | INFO     | overall cleanup function is called
[2025-12-01 03:44:27] 2025-12-01 08:43:56,765 | INFO     | --- collectZombieJob: --- 10, [36603]
[2025-12-01 03:44:27] 2025-12-01 08:43:56,765 | INFO     | zombie collector waiting for pid 36603
[2025-12-01 03:44:27] 2025-12-01 08:43:56,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 03:44:27] 2025-12-01 08:43:56,765 | INFO     | collected zombie processes
[2025-12-01 03:44:27] 2025-12-01 08:43:56,765 | INFO     | will attempt to kill all subprocesses of pid=36603
[2025-12-01 03:44:27] 2025-12-01 08:43:56,877 | INFO     | process IDs to be killed: [36603] (in reverse order)
[2025-12-01 03:44:27] 2025-12-01 08:43:56,908 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 03:44:27] 2025-12-01 08:43:56,909 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 03:44:27] 2025-12-01 08:43:56,911 | INFO     | did not find any defunct processes belonging to 36603
[2025-12-01 03:44:27] 2025-12-01 08:43:56,914 | INFO     | did not find any defunct processes belonging to 36603
[2025-12-01 03:44:27] 2025-12-01 08:43:56,914 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 03:44:27] 2025-12-01 08:43:56,915 | INFO     | ready for new job
[2025-12-01 03:44:27] 2025-12-01 08:43:56,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 03:44:27] 2025-12-01 08:43:56,917 | INFO     | ***************************************
[2025-12-01 03:44:27] 2025-12-01 08:43:56,917 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 03:44:27] 2025-12-01 08:43:56,917 | INFO     | ***************************************
[2025-12-01 03:44:27] 2025-12-01 08:43:56,917 | INFO     | 
[2025-12-01 03:44:27] 2025-12-01 08:43:56,918 | INFO     | architecture information:
[2025-12-01 03:44:27] 2025-12-01 08:43:56,919 | INFO     | executing command: cat /etc/os-release
[2025-12-01 03:44:27] 2025-12-01 08:43:56,926 | INFO     | cat /etc/os-release:
[2025-12-01 03:44:27] NAME="CentOS Linux"
[2025-12-01 03:44:27] VERSION="7 (Core)"
[2025-12-01 03:44:27] ID="centos"
[2025-12-01 03:44:27] ID_LIKE="rhel fedora"
[2025-12-01 03:44:27] VERSION_ID="7"
[2025-12-01 03:44:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 03:44:27] ANSI_COLOR="0;31"
[2025-12-01 03:44:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 03:44:27] HOME_URL="https://www.centos.org/"
[2025-12-01 03:44:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 03:44:27] 
[2025-12-01 03:44:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 03:44:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 03:44:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 03:44:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 03:44:27] 
[2025-12-01 03:44:27] 2025-12-01 08:43:56,926 | INFO     | ***************************************
[2025-12-01 03:44:27] 2025-12-01 08:43:57,429 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-01 03:44:27] 2025-12-01 08:43:57,438 | INFO     | sufficient remaining disk space (38087426048 B)
[2025-12-01 03:44:27] 2025-12-01 08:43:57,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 03:44:27] 2025-12-01 08:43:57,438 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 03:44:27] 2025-12-01 08:43:57,438 | INFO     | update_server=False
[2025-12-01 03:44:27] 2025-12-01 08:43:57,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 03:44:27] 2025-12-01 08:43:57,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:44:27] 2025-12-01 08:43:57,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:44:27] 2025-12-01 08:43:57,439 | INFO     | aborting loop
[2025-12-01 03:44:27] 2025-12-01 08:43:58,150 | INFO     | all data control threads have been joined
[2025-12-01 03:44:27] 2025-12-01 08:43:58,343 | INFO     | all job control threads have been joined
[2025-12-01 03:44:27] 2025-12-01 08:43:58,444 | INFO     | [job] retrieve thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:58,444 | INFO     | [job] queue monitor thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:58,444 | INFO     | [job] job monitor thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:58,483 | INFO     | [payload] failed_post thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:58,580 | INFO     | all payload control threads have been joined
[2025-12-01 03:44:27] 2025-12-01 08:43:58,744 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 03:44:27] 2025-12-01 08:43:58,945 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,080 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,156 | INFO     | [data] control thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,264 | INFO     | [data] copytool_in thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,348 | INFO     | [job] control thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 03:44:27] 2025-12-01 08:43:59,565 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,586 | INFO     | [payload] control thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,637 | INFO     | [payload] validate_post thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:43:59,717 | INFO     | [job] validate thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:44:00,749 | INFO     | [data] copytool_out thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:44:03,397 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:44:08,472 | INFO     | job.realtimelogging is not enabled
[2025-12-01 03:44:27] 2025-12-01 08:44:09,478 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 03:44:27] 2025-12-01 08:44:13,071 | INFO     | [monitor] cgroup control has ended
[2025-12-01 03:44:27] 2025-12-01 08:44:14,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195795420992)>', '<ExcThread(monitor, started 140195013834496)>']
[2025-12-01 03:44:27] 2025-12-01 08:44:19,021 | INFO     | all workflow threads have been joined
[2025-12-01 03:44:27] 2025-12-01 08:44:19,021 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 03:44:27] 2025-12-01 08:44:19,021 | INFO     | traces error code: 0
[2025-12-01 03:44:27] 2025-12-01 08:44:19,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 03:44:27] 2025-12-01 08:44:27,550 | INFO     | PID=16949 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 03:44:27] 2025-12-01 08:44:27,551 | INFO     | .. there are 3 such processes running
[2025-12-01 03:44:27] 2025-12-01 08:44:27,551 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 03:44:27] 2025-12-01 08:44:27,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 03:44:27] 2025-12-01 08:44:27,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 03:44:27] 2025-12-01 08:44:27,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 03:44:27] 2025-12-01 08:44:27,551 | INFO     | [monitor] control thread has ended
[2025-12-01 03:44:27] 2025-12-01 08:44:27,615 [wrapper] ==== pilot stdout END ====
[2025-12-01 03:44:27] 2025-12-01 08:44:27,617 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 03:44:27] 2025-12-01 08:44:27,619 [wrapper] pilotpid: 16949
[2025-12-01 03:44:27] 2025-12-01 08:44:27,620 [wrapper] Pilot exit status: 0
[2025-12-01 03:44:27] 2025-12-01 08:44:27,626 [wrapper] pandaids: 6893861433 6893861433
[2025-12-01 03:44:27] 2025-12-01 08:44:27,660 [wrapper] cleanup supervisor_pilot  741025 16951
[2025-12-01 03:44:27] 2025-12-01 08:44:27,662 [wrapper] Test setup, not cleaning
[2025-12-01 03:44:27] 2025-12-01 08:44:27,663 [wrapper] apfmon messages muted
[2025-12-01 03:44:27] 2025-12-01 08:44:27,665 [wrapper] ==== wrapper stdout END ====
[2025-12-01 03:44:27] 2025-12-01 08:44:27,666 [wrapper] ==== wrapper stderr END ====
[2025-12-01 03:44:27]  *** Error codes and diagnostics ***
[2025-12-01 03:44:27]     "exeErrorCode": 0,
[2025-12-01 03:44:27]     "exeErrorDiag": "",
[2025-12-01 03:44:27]     "pilotErrorCode": 0,
[2025-12-01 03:44:27]     "pilotErrorDiag": "",
[2025-12-01 03:44:27]  *** Listing of results directory ***
[2025-12-01 03:44:27] total 1729224
[2025-12-01 03:44:27] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:50 pilot3.tar.gz
[2025-12-01 03:44:27] -rwx------. 1 boincer umatlas     36292 Nov 20 08:54 runpilot2-wrapper.sh
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:54 queuedata.json
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas       100 Nov 30 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 03:44:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 14:18 run_atlas
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas       105 Nov 30 14:18 job.xml
[2025-12-01 03:44:27] -rw-r--r--. 3 boincer umatlas 412884281 Nov 30 14:18 EVNT.47493127._000567.pool.root.1
[2025-12-01 03:44:27] -rw-r--r--. 3 boincer umatlas 412884281 Nov 30 14:18 ATLAS.root_0
[2025-12-01 03:44:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 14:18 start_atlas.sh
[2025-12-01 03:44:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 14:18 shared
[2025-12-01 03:44:27] -rw-r--r--. 2 boincer umatlas    590098 Nov 30 14:18 input.tar.gz
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas         0 Nov 30 14:18 boinc_lockfile
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas      2786 Nov 30 15:55 pandaJob.out
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas    993245 Nov 30 15:56 agis_schedconf.cvmfs.json
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas       532 Dec  1 03:38 boinc_task_state.xml
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas      6525 Dec  1 03:39 init_data.xml
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas 925119700 Dec  1 03:43 HITS.47523449._005663.pool.root.1
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas        96 Dec  1 03:43 pilot_heartbeat.json
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas      1057 Dec  1 03:43 memory_monitor_summary.json
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas   1516240 Dec  1 03:43 agis_ddmendpoints.agis.ALL.json
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas   2025395 Dec  1 03:43 log.47523449._005663.job.log.tgz.1
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas      8643 Dec  1 03:43 heartbeat.json
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 03:44 boinc_mmap_file
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas        29 Dec  1 03:44 wrapper_checkpoint.txt
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas       820 Dec  1 03:44 pilotlog.txt
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas   5933323 Dec  1 03:44 log.47523449._005663.job.log.1
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas       353 Dec  1 03:44 output.list
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas       620 Dec  1 03:44 runtime_log
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas   7976960 Dec  1 03:44 result.tar.gz
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas      8903 Dec  1 03:44 runtime_log.err
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas       789 Dec  1 03:44 jHlMDmSIKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmElGKDmRVxV2m.diag
[2025-12-01 03:44:27] -rw-r--r--. 1 boincer umatlas     23383 Dec  1 03:44 stderr.txt
[2025-12-01 03:44:27] HITS file was successfully produced:
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas 925119700 Dec  1 03:43 shared/HITS.pool.root.1
[2025-12-01 03:44:27]  *** Contents of shared directory: ***
[2025-12-01 03:44:27] total 1315044
[2025-12-01 03:44:27] -rw-r--r--. 3 boincer umatlas 412884281 Nov 30 14:18 ATLAS.root_0
[2025-12-01 03:44:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 14:18 start_atlas.sh
[2025-12-01 03:44:27] -rw-r--r--. 2 boincer umatlas    590098 Nov 30 14:18 input.tar.gz
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas 925119700 Dec  1 03:43 HITS.pool.root.1
[2025-12-01 03:44:27] -rw-------. 1 boincer umatlas   7976960 Dec  1 03:44 result.tar.gz
03:44:29 (4066): run_atlas exited; CPU time 326247.408983
03:44:29 (4066): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN