Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:48:02 (560751): wrapper (7.7.26015): starting
13:48:02 (560751): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 13:48:02] Arguments: --nthreads 8
[2025-11-30 13:48:02] Threads: 8
[2025-11-30 13:48:02] Checking for CVMFS
[2025-11-30 13:48:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 13:48:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 13:48:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 13:48:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 13:48:04] 2.13.2.0 14352 40507 201316 153490 0 803 26333293 40960001 24066 16776704 0 314408082 99.678 258858836 49156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 13:48:04] CVMFS is ok
[2025-11-30 13:48:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 13:48:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 13:48:04] Further information can be found at the LHC@home message board.
[2025-11-30 13:48:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 13:48:04] Checking for apptainer binary...
[2025-11-30 13:48:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 13:48:04] Running /usr/bin/apptainer --version
[2025-11-30 13:48:04] apptainer version 1.4.4-1.el9
[2025-11-30 13:48:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 13:48:04] c-208-36.aglt2.org
[2025-11-30 13:48:04] apptainer works
[2025-11-30 13:48:04] Set ATHENA_PROC_NUMBER=8
[2025-11-30 13:48:04] Set ATHENA_CORE_NUMBER=8
[2025-11-30 13:48:04] Starting ATLAS job with PandaID=6894267760
[2025-11-30 13:48:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 02:33:45]  *** The last 200 lines of the pilot log: ***
[2025-12-01 02:33:45] 2025-12-01 07:32:55,828 | INFO     | monitor loop #2883: job 0:6894267760 is in state 'finished'
[2025-12-01 02:33:45] 2025-12-01 07:32:55,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 02:33:45] 2025-12-01 07:32:56,940 | INFO     | time since job start (45823s) is within the limit (172800.0s)
[2025-12-01 02:33:45] 2025-12-01 07:32:58,346 | INFO     | monitor loop #2884: job 0:6894267760 is in state 'finished'
[2025-12-01 02:33:45] 2025-12-01 07:32:58,346 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 02:33:45] 2025-12-01 07:32:59,500 | INFO     | PID=571055 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 02:33:45] 2025-12-01 07:32:59,501 | INFO     | .. there are 37 such processes running
[2025-12-01 02:33:45] 2025-12-01 07:33:00,515 | INFO     | time since job start (45827s) is within the limit (172800.0s)
[2025-12-01 02:33:45] 2025-12-01 07:33:00,874 | INFO     | monitor loop #2885: job 0:6894267760 is in state 'finished'
[2025-12-01 02:33:45] 2025-12-01 07:33:00,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 02:33:45] 2025-12-01 07:33:02,522 | INFO     | time since job start (45829s) is within the limit (172800.0s)
[2025-12-01 02:33:45] 2025-12-01 07:33:03,396 | INFO     | monitor loop #2886: job 0:6894267760 is in state 'finished'
[2025-12-01 02:33:45] 2025-12-01 07:33:03,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 02:33:45] 2025-12-01 07:33:04,548 | INFO     | time since job start (45831s) is within the limit (172800.0s)
[2025-12-01 02:33:45] 2025-12-01 07:33:05,908 | INFO     | monitor loop #2887: job 0:6894267760 is in state 'finished'
[2025-12-01 02:33:45] 2025-12-01 07:33:05,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 02:33:45] 2025-12-01 07:33:06,555 | INFO     | time since job start (45833s) is within the limit (172800.0s)
[2025-12-01 02:33:45] 2025-12-01 07:33:06,732 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-01 02:33:45] 2025-12-01 07:33:06,745 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3764.600945312501
[2025-12-01 02:33:45] 2025-12-01 07:33:06,785 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894267760/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 02:33:45] 2025-12-01 07:33:06,785 | INFO     | extracted standard info from prmon json
[2025-12-01 02:33:45] 2025-12-01 07:33:06,785 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 02:33:45] 2025-12-01 07:33:06,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 02:33:45] 2025-12-01 07:33:06,807 | INFO     | fitting pss+swap vs Time
[2025-12-01 02:33:45] 2025-12-01 07:33:06,807 | INFO     | sum of square deviations: 130288409796.31226
[2025-12-01 02:33:45] 2025-12-01 07:33:06,832 | INFO     | sum of deviations: 677749220134.327
[2025-12-01 02:33:45] 2025-12-01 07:33:06,833 | INFO     | mean x: 1764551513.5353806
[2025-12-01 02:33:45] 2025-12-01 07:33:06,833 | INFO     | mean y: 2772815.7423230973
[2025-12-01 02:33:45] 2025-12-01 07:33:06,833 | INFO     | intersect: -9176273993.218735
[2025-12-01 02:33:45] 2025-12-01 07:33:06,833 | INFO     | chi2: 43.74096488520251
[2025-12-01 02:33:45] 2025-12-01 07:33:06,834 | INFO     | sum of square deviations: 127696786354.44621
[2025-12-01 02:33:45] 2025-12-01 07:33:06,906 | INFO     | sum of deviations: 941567176390.5111
[2025-12-01 02:33:45] 2025-12-01 07:33:06,907 | INFO     | mean x: 1764551361.045699
[2025-12-01 02:33:45] 2025-12-01 07:33:06,907 | INFO     | mean y: 2788332.190860215
[2025-12-01 02:33:45] 2025-12-01 07:33:06,907 | INFO     | intersect: -13008060962.0442
[2025-12-01 02:33:45] 2025-12-01 07:33:06,907 | INFO     | chi2: 39.211772497727424
[2025-12-01 02:33:45] 2025-12-01 07:33:06,907 | INFO     | current chi2=39.211772497727424 (change=10.354578138278113 %)
[2025-12-01 02:33:45] 2025-12-01 07:33:06,907 | INFO     | right removable region: 743
[2025-12-01 02:33:45] 2025-12-01 07:33:06,908 | INFO     | sum of square deviations: 127696084854.4462
[2025-12-01 02:33:45] 2025-12-01 07:33:06,949 | INFO     | sum of deviations: 368212418999.2333
[2025-12-01 02:33:45] 2025-12-01 07:33:06,950 | INFO     | mean x: 1764551666.045699
[2025-12-01 02:33:45] 2025-12-01 07:33:06,950 | INFO     | mean y: 2791024.9637096776
[2025-12-01 02:33:45] 2025-12-01 07:33:06,950 | INFO     | intersect: -5085304182.844781
[2025-12-01 02:33:45] 2025-12-01 07:33:06,950 | INFO     | chi2: 39.08661568814523
[2025-12-01 02:33:45] 2025-12-01 07:33:06,950 | INFO     | current chi2=39.08661568814523 (change=10.640709936949373 %)
[2025-12-01 02:33:45] 2025-12-01 07:33:06,950 | INFO     | left removable region: 10
[2025-12-01 02:33:45] 2025-12-01 07:33:06,951 | INFO     | sum of square deviations: 122115294989.77078
[2025-12-01 02:33:45] 2025-12-01 07:33:06,978 | INFO     | sum of deviations: 397327506076.4457
[2025-12-01 02:33:45] 2025-12-01 07:33:07,063 | INFO     | mean x: 1764551635.5688949
[2025-12-01 02:33:45] 2025-12-01 07:33:07,063 | INFO     | mean y: 2826359.931787176
[2025-12-01 02:33:45] 2025-12-01 07:33:07,063 | INFO     | intersect: -5738509324.205336
[2025-12-01 02:33:45] 2025-12-01 07:33:07,063 | INFO     | chi2: 30.15995701437291
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | current memory leak: 3.25 B/s (using 733 data points, chi2=30.16)
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | could have reported an average CPU frequency of 3778 MHz (28 samples)
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | ..............................
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | . Timing measurements:
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | . get job = 0 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | . initial setup = 4 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | . payload setup = 48 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,064 | INFO     | . stage-in = 0 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,065 | INFO     | . payload execution = 45668 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,065 | INFO     | . stage-out = 8 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,065 | INFO     | . log creation = 3 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,065 | INFO     | ..............................
[2025-12-01 02:33:45] 2025-12-01 07:33:07,381 | INFO     | 
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | job summary report
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | --------------------------------------------------
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | PanDA job id: 6894267760
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | task id: 47533967
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | errors: (none)
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | pilot state: finished 
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | transexitcode: 0
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | exeerrorcode: 0
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | exeerrordiag: 
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | exitcode: 0
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | exitmsg: OK
[2025-12-01 02:33:45] 2025-12-01 07:33:07,383 | INFO     | cpuconsumptiontime: 142876 s
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | nevents: 1000
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | neventsw: 0
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | pid: 586568
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | pgrp: 586568
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | corecount: 8
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | event service: False
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 33: 2284661, 34: 2284717, 45719: 2331420, 45720: 2331419, 45729: 2340525, 45769: 2340715}
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | --------------------------------------------------
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | 
[2025-12-01 02:33:45] 2025-12-01 07:33:07,384 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-01 02:33:45] 2025-12-01 07:33:07,555 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,555 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,555 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | job 6894267760 has completed (purged errors)
[2025-12-01 02:33:45] 2025-12-01 07:33:07,556 | INFO     | overall cleanup function is called
[2025-12-01 02:33:45] 2025-12-01 07:33:08,624 | INFO     | --- collectZombieJob: --- 10, [586568]
[2025-12-01 02:33:45] 2025-12-01 07:33:08,624 | INFO     | zombie collector waiting for pid 586568
[2025-12-01 02:33:45] 2025-12-01 07:33:08,624 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 02:33:45] 2025-12-01 07:33:08,624 | INFO     | collected zombie processes
[2025-12-01 02:33:45] 2025-12-01 07:33:08,624 | INFO     | will attempt to kill all subprocesses of pid=586568
[2025-12-01 02:33:45] 2025-12-01 07:33:10,355 | INFO     | process IDs to be killed: [586568] (in reverse order)
[2025-12-01 02:33:45] 2025-12-01 07:33:10,703 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 02:33:45] 2025-12-01 07:33:10,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 02:33:45] 2025-12-01 07:33:10,726 | INFO     | did not find any defunct processes belonging to 586568
[2025-12-01 02:33:45] 2025-12-01 07:33:10,747 | INFO     | did not find any defunct processes belonging to 586568
[2025-12-01 02:33:45] 2025-12-01 07:33:10,748 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 02:33:45] 2025-12-01 07:33:10,748 | INFO     | ready for new job
[2025-12-01 02:33:45] 2025-12-01 07:33:10,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 02:33:45] 2025-12-01 07:33:10,760 | INFO     | ***************************************
[2025-12-01 02:33:45] 2025-12-01 07:33:10,760 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 02:33:45] 2025-12-01 07:33:10,760 | INFO     | ***************************************
[2025-12-01 02:33:45] 2025-12-01 07:33:10,760 | INFO     | 
[2025-12-01 02:33:45] 2025-12-01 07:33:10,765 | INFO     | architecture information:
[2025-12-01 02:33:45] 2025-12-01 07:33:10,765 | INFO     | executing command: cat /etc/os-release
[2025-12-01 02:33:45] 2025-12-01 07:33:10,818 | INFO     | cat /etc/os-release:
[2025-12-01 02:33:45] NAME="CentOS Linux"
[2025-12-01 02:33:45] VERSION="7 (Core)"
[2025-12-01 02:33:45] ID="centos"
[2025-12-01 02:33:45] ID_LIKE="rhel fedora"
[2025-12-01 02:33:45] VERSION_ID="7"
[2025-12-01 02:33:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 02:33:45] ANSI_COLOR="0;31"
[2025-12-01 02:33:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 02:33:45] HOME_URL="https://www.centos.org/"
[2025-12-01 02:33:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 02:33:45] 
[2025-12-01 02:33:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 02:33:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 02:33:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 02:33:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 02:33:45] 
[2025-12-01 02:33:45] 2025-12-01 07:33:10,818 | INFO     | ***************************************
[2025-12-01 02:33:45] 2025-12-01 07:33:11,322 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-01 02:33:45] 2025-12-01 07:33:11,406 | INFO     | sufficient remaining disk space (158982995968 B)
[2025-12-01 02:33:45] 2025-12-01 07:33:11,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 02:33:45] 2025-12-01 07:33:11,406 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 02:33:45] 2025-12-01 07:33:11,406 | INFO     | update_server=False
[2025-12-01 02:33:45] 2025-12-01 07:33:11,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 02:33:45] 2025-12-01 07:33:11,801 | INFO     | all data control threads have been joined
[2025-12-01 02:33:45] 2025-12-01 07:33:11,969 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 02:33:45] 2025-12-01 07:33:11,969 | INFO     | aborting loop
[2025-12-01 02:33:45] 2025-12-01 07:33:11,987 | INFO     | all payload control threads have been joined
[2025-12-01 02:33:45] 2025-12-01 07:33:12,400 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 02:33:45] 2025-12-01 07:33:12,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 02:33:45] 2025-12-01 07:33:12,412 | INFO     | [job] retrieve thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:12,606 | INFO     | [payload] failed_post thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:12,807 | INFO     | [data] control thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:12,815 | INFO     | all job control threads have been joined
[2025-12-01 02:33:45] 2025-12-01 07:33:12,850 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:12,975 | INFO     | [job] job monitor thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:12,993 | INFO     | [payload] control thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,369 | INFO     | [job] validate thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,384 | INFO     | [data] copytool_in thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,412 | INFO     | [job] queue monitor thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,424 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,434 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 02:33:45] 2025-12-01 07:33:13,453 | INFO     | [payload] validate_post thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,821 | INFO     | [job] control thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:13,839 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:14,409 | INFO     | [data] copytool_out thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:17,485 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 02:33:45] 2025-12-01 07:33:33,323 | INFO     | [monitor] cgroup control has ended
[2025-12-01 02:33:45] 2025-12-01 07:33:33,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187111491392)>', '<ExcThread(monitor, started 140186298074880)>']
[2025-12-01 02:33:45] 2025-12-01 07:33:38,838 | INFO     | all workflow threads have been joined
[2025-12-01 02:33:45] 2025-12-01 07:33:38,838 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 02:33:45] 2025-12-01 07:33:38,838 | INFO     | traces error code: 0
[2025-12-01 02:33:45] 2025-12-01 07:33:38,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 02:33:45] 2025-12-01 07:33:41,823 | INFO     | PID=571055 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 02:33:45] 2025-12-01 07:33:41,838 | INFO     | .. there are 37 such processes running
[2025-12-01 02:33:45] 2025-12-01 07:33:41,838 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 02:33:45] 2025-12-01 07:33:41,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 02:33:45] 2025-12-01 07:33:41,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 02:33:45] 2025-12-01 07:33:41,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 02:33:45] 2025-12-01 07:33:41,838 | INFO     | [monitor] control thread has ended
[2025-12-01 02:33:45] 2025-12-01 07:33:43,603 [wrapper] ==== pilot stdout END ====
[2025-12-01 02:33:45] 2025-12-01 07:33:43,635 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 02:33:45] 2025-12-01 07:33:43,637 [wrapper] pilotpid: 571055
[2025-12-01 02:33:45] 2025-12-01 07:33:43,639 [wrapper] Pilot exit status: 0
[2025-12-01 02:33:45] 2025-12-01 07:33:43,822 [wrapper] pandaids: 6894267760
[2025-12-01 02:33:45] 2025-12-01 07:33:44,136 [wrapper] cleanup supervisor_pilot 3504120 571056
[2025-12-01 02:33:45] 2025-12-01 07:33:44,173 [wrapper] Test setup, not cleaning
[2025-12-01 02:33:45] 2025-12-01 07:33:44,245 [wrapper] apfmon messages muted
[2025-12-01 02:33:45] 2025-12-01 07:33:44,283 [wrapper] ==== wrapper stdout END ====
[2025-12-01 02:33:45] 2025-12-01 07:33:44,314 [wrapper] ==== wrapper stderr END ====
[2025-12-01 02:33:45]  *** Error codes and diagnostics ***
[2025-12-01 02:33:45]     "exeErrorCode": 0,
[2025-12-01 02:33:45]     "exeErrorDiag": "",
[2025-12-01 02:33:45]     "pilotErrorCode": 0,
[2025-12-01 02:33:45]     "pilotErrorDiag": "",
[2025-12-01 02:33:45]  *** Listing of results directory ***
[2025-12-01 02:33:45] total 1315744
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 00:09 pilot3.tar.gz
[2025-12-01 02:33:45] -rwx------. 1 boincer umatlas     36292 Nov 21 00:32 runpilot2-wrapper.sh
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 00:32 queuedata.json
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas       100 Nov 30 13:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 02:33:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 13:48 run_atlas
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas       105 Nov 30 13:48 job.xml
[2025-12-01 02:33:45] -rw-r--r--. 2 boincer umatlas 410429969 Nov 30 13:48 EVNT.47493127._002252.pool.root.1
[2025-12-01 02:33:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 13:48 start_atlas.sh
[2025-12-01 02:33:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 13:48 shared
[2025-12-01 02:33:45] -rw-r--r--. 2 boincer umatlas    590099 Nov 30 13:48 input.tar.gz
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas         0 Nov 30 13:48 boinc_lockfile
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas      2786 Nov 30 13:48 pandaJob.out
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas      2074 Nov 30 13:48 stderr.txt
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas        57 Nov 30 13:48 setup.sh.local
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas    993071 Nov 30 13:49 agis_schedconf.cvmfs.json
[2025-12-01 02:33:45] drwx------. 5 boincer umatlas      4096 Nov 30 13:49 pilot3
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas       533 Dec  1 01:48 boinc_task_state.xml
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas 917075240 Dec  1 02:29 HITS.47533967._002239.pool.root.1
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas      7173 Dec  1 02:29 init_data.xml
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas      1076 Dec  1 02:32 memory_monitor_summary.json
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas   1516240 Dec  1 02:32 agis_ddmendpoints.agis.ALL.json
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas   1965115 Dec  1 02:32 log.47533967._002239.job.log.tgz.1
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas        95 Dec  1 02:32 pilot_heartbeat.json
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas      8644 Dec  1 02:33 heartbeat.json
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas       822 Dec  1 02:33 pilotlog.txt
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 02:33 boinc_mmap_file
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas        29 Dec  1 02:33 wrapper_checkpoint.txt
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas   5995449 Dec  1 02:33 log.47533967._002239.job.log.1
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas       353 Dec  1 02:33 output.list
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas       620 Dec  1 02:33 runtime_log
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas   7976960 Dec  1 02:33 result.tar.gz
[2025-12-01 02:33:45] -rw-r--r--. 1 boincer umatlas      9343 Dec  1 02:33 runtime_log.err
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas       666 Dec  1 02:33 ChtLDmbwYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmW7IKDmwoFWZm.diag
[2025-12-01 02:33:45] HITS file was successfully produced:
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas 917075240 Dec  1 02:29 shared/HITS.pool.root.1
[2025-12-01 02:33:45]  *** Contents of shared directory: ***
[2025-12-01 02:33:45] total 1304792
[2025-12-01 02:33:45] -rw-r--r--. 2 boincer umatlas 410429969 Nov 30 13:48 ATLAS.root_0
[2025-12-01 02:33:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 13:48 start_atlas.sh
[2025-12-01 02:33:45] -rw-r--r--. 2 boincer umatlas    590099 Nov 30 13:48 input.tar.gz
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas 917075240 Dec  1 02:29 HITS.pool.root.1
[2025-12-01 02:33:45] -rw-------. 1 boincer umatlas   7976960 Dec  1 02:33 result.tar.gz
02:33:47 (560751): run_atlas exited; CPU time 143252.977801
02:33:47 (560751): called boinc_finish(0)

</stderr_txt>
]]>

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