Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:50:35 (1821): wrapper (7.7.26015): starting
22:50:35 (1821): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 22:50:35] Arguments: --nthreads 8
[2025-11-30 22:50:35] Threads: 8
[2025-11-30 22:50:35] Checking for CVMFS
[2025-11-30 22:50:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 22:50:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 22:50:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 22:50:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 22:50:35] 2.11.0.0 4368 71836 88248 153494 1 110 3267776 4096001 4447 130560 1 9063913 99.553 6543474 616 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-30 22:50:35] CVMFS is ok
[2025-11-30 22:50:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 22:50:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 22:50:35] Further information can be found at the LHC@home message board.
[2025-11-30 22:50:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 22:50:35] Checking for apptainer binary...
[2025-11-30 22:50:35] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-30 22:50:35] apptainer is not installed, using version from CVMFS
[2025-11-30 22:50:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 22:50:35] WARNING: Environment variable TMPDIR already has value [/tmp/job_10937278/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node316
[2025-11-30 22:50:35] apptainer works
[2025-11-30 22:50:35] Set ATHENA_PROC_NUMBER=8
[2025-11-30 22:50:35] Set ATHENA_CORE_NUMBER=8
[2025-11-30 22:50:35] Starting ATLAS job with PandaID=6893887079
[2025-11-30 22:50:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10937278/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 03:15:36]  *** The last 200 lines of the pilot log: ***
[2025-12-01 03:15:36] 2025-12-01 02:15:02,891 | INFO     | monitor loop #1162: job 0:6893887079 is in state 'finished'
[2025-12-01 03:15:36] 2025-12-01 02:15:02,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,643 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 03:15:36] 2025-12-01 02:15:03,647 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2380.183953125
[2025-12-01 03:15:36] 2025-12-01 02:15:03,652 | INFO     | using path: /tmp/job_10937278/atlas/pilot/slots/0/PanDA_Pilot-6893887079/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,653 | INFO     | extracted standard info from prmon json
[2025-12-01 03:15:36] 2025-12-01 02:15:03,653 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 03:15:36] 2025-12-01 02:15:03,653 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 03:15:36] 2025-12-01 02:15:03,655 | INFO     | fitting pss+swap vs Time
[2025-12-01 03:15:36] 2025-12-01 02:15:03,656 | INFO     | sum of square deviations: 5449944045.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,656 | INFO     | sum of deviations: 111205384917.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,657 | INFO     | mean x: 1764547358.5
[2025-12-01 03:15:36] 2025-12-01 02:15:03,657 | INFO     | mean y: 2913723.130769231
[2025-12-01 03:15:36] 2025-12-01 02:15:03,657 | INFO     | intersect: -36002440934.83033
[2025-12-01 03:15:36] 2025-12-01 02:15:03,657 | INFO     | chi2: 2.7503997615275035
[2025-12-01 03:15:36] 2025-12-01 02:15:03,657 | INFO     | sum of square deviations: 5141528960.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,658 | INFO     | sum of deviations: 154024465701.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,658 | INFO     | mean x: 1764547206.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,658 | INFO     | mean y: 2934708.4156862744
[2025-12-01 03:15:36] 2025-12-01 02:15:03,658 | INFO     | intersect: -52857497027.50561
[2025-12-01 03:15:36] 2025-12-01 02:15:03,658 | INFO     | chi2: 1.4148437439682569
[2025-12-01 03:15:36] 2025-12-01 02:15:03,658 | INFO     | current chi2=1.4148437439682569 (change=48.558614505460554 %)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,658 | INFO     | sum of square deviations: 4844974562.5
[2025-12-01 03:15:36] 2025-12-01 02:15:03,659 | INFO     | sum of deviations: 146261668500.50003
[2025-12-01 03:15:36] 2025-12-01 02:15:03,659 | INFO     | mean x: 1764547053.5
[2025-12-01 03:15:36] 2025-12-01 02:15:03,659 | INFO     | mean y: 2930716.884
[2025-12-01 03:15:36] 2025-12-01 02:15:03,659 | INFO     | intersect: -53265789864.25756
[2025-12-01 03:15:36] 2025-12-01 02:15:03,660 | INFO     | chi2: 1.4151549114652051
[2025-12-01 03:15:36] 2025-12-01 02:15:03,660 | INFO     | current chi2=1.4151549114652051 (change=-0.021993064483256653 %)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,660 | INFO     | right removable region: 249
[2025-12-01 03:15:36] 2025-12-01 02:15:03,660 | INFO     | sum of square deviations: 5141528960.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,661 | INFO     | sum of deviations: 63401617579.999985
[2025-12-01 03:15:36] 2025-12-01 02:15:03,661 | INFO     | mean x: 1764547511.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,661 | INFO     | mean y: 2937170.843137255
[2025-12-01 03:15:36] 2025-12-01 02:15:03,661 | INFO     | intersect: -21756186888.269978
[2025-12-01 03:15:36] 2025-12-01 02:15:03,661 | INFO     | chi2: 1.3880180926535526
[2025-12-01 03:15:36] 2025-12-01 02:15:03,661 | INFO     | current chi2=1.3880180926535526 (change=49.5339509525451 %)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,661 | INFO     | sum of square deviations: 4844974562.5
[2025-12-01 03:15:36] 2025-12-01 02:15:03,662 | INFO     | sum of deviations: 53612892283.5
[2025-12-01 03:15:36] 2025-12-01 02:15:03,662 | INFO     | mean x: 1764547663.5
[2025-12-01 03:15:36] 2025-12-01 02:15:03,662 | INFO     | mean y: 2942199.988
[2025-12-01 03:15:36] 2025-12-01 02:15:03,662 | INFO     | intersect: -19522960896.500572
[2025-12-01 03:15:36] 2025-12-01 02:15:03,662 | INFO     | chi2: 1.3770963830288987
[2025-12-01 03:15:36] 2025-12-01 02:15:03,662 | INFO     | current chi2=1.3770963830288987 (change=0.786856430939905 %)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,663 | INFO     | left removable region: 20
[2025-12-01 03:15:36] 2025-12-01 02:15:03,663 | INFO     | sum of square deviations: 3723716330.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,663 | INFO     | sum of deviations: 74428539755.99998
[2025-12-01 03:15:36] 2025-12-01 02:15:03,663 | INFO     | mean x: 1764547633.0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | mean y: 2968805.593886463
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | intersect: -35266286963.43945
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | chi2: 0.023841238237974457
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | current memory leak: 19.99 B/s (using 229 data points, chi2=0.02)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | could have reported an average CPU frequency of 2781 MHz (12 samples)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | ..............................
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . Timing measurements:
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . get job = 0 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . initial setup = 1 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . payload setup = 2 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . stage-in = 0 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . payload execution = 15839 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . stage-out = 1 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | . log creation = 0 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,664 | INFO     | ..............................
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | 
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | job summary report
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | --------------------------------------------------
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | PanDA job id: 6893887079
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | task id: 47523449
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | errors: (none)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | pilot state: finished 
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | transexitcode: 0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | exeerrorcode: 0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | exeerrordiag: 
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | exitcode: 0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | exitmsg: OK
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | cpuconsumptiontime: 121120 s
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | nevents: 1000
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | neventsw: 0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | pid: 15431
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | pgrp: 15431
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | corecount: 8
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | event service: False
[2025-12-01 03:15:36] 2025-12-01 02:15:03,713 | INFO     | sizes: {0: 2284158, 1: 2284468, 2: 2284730, 11: 2284758, 15844: 2317063, 15847: 2326271, 15849: 2326461}
[2025-12-01 03:15:36] 2025-12-01 02:15:03,714 | INFO     | --------------------------------------------------
[2025-12-01 03:15:36] 2025-12-01 02:15:03,714 | INFO     | 
[2025-12-01 03:15:36] 2025-12-01 02:15:03,714 | INFO     | executing command: ls -lF /tmp/job_10937278/atlas/pilot/slots/0
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | job 6893887079 has completed (purged errors)
[2025-12-01 03:15:36] 2025-12-01 02:15:03,723 | INFO     | overall cleanup function is called
[2025-12-01 03:15:36] 2025-12-01 02:15:04,730 | INFO     | --- collectZombieJob: --- 10, [15431]
[2025-12-01 03:15:36] 2025-12-01 02:15:04,731 | INFO     | zombie collector waiting for pid 15431
[2025-12-01 03:15:36] 2025-12-01 02:15:04,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 03:15:36] 2025-12-01 02:15:04,731 | INFO     | collected zombie processes
[2025-12-01 03:15:36] 2025-12-01 02:15:04,731 | INFO     | will attempt to kill all subprocesses of pid=15431
[2025-12-01 03:15:36] 2025-12-01 02:15:04,817 | INFO     | process IDs to be killed: [15431] (in reverse order)
[2025-12-01 03:15:36] 2025-12-01 02:15:04,845 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 03:15:36] 2025-12-01 02:15:04,845 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 03:15:36] 2025-12-01 02:15:04,848 | INFO     | did not find any defunct processes belonging to 15431
[2025-12-01 03:15:36] 2025-12-01 02:15:04,851 | INFO     | did not find any defunct processes belonging to 15431
[2025-12-01 03:15:36] 2025-12-01 02:15:04,851 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 03:15:36] 2025-12-01 02:15:04,851 | INFO     | ready for new job
[2025-12-01 03:15:36] 2025-12-01 02:15:04,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 03:15:36] 2025-12-01 02:15:04,852 | INFO     | ***************************************
[2025-12-01 03:15:36] 2025-12-01 02:15:04,852 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 03:15:36] 2025-12-01 02:15:04,852 | INFO     | ***************************************
[2025-12-01 03:15:36] 2025-12-01 02:15:04,852 | INFO     | 
[2025-12-01 03:15:36] 2025-12-01 02:15:04,866 | INFO     | architecture information:
[2025-12-01 03:15:36] 2025-12-01 02:15:04,866 | INFO     | executing command: cat /etc/os-release
[2025-12-01 03:15:36] 2025-12-01 02:15:04,872 | INFO     | cat /etc/os-release:
[2025-12-01 03:15:36] NAME="CentOS Linux"
[2025-12-01 03:15:36] VERSION="7 (Core)"
[2025-12-01 03:15:36] ID="centos"
[2025-12-01 03:15:36] ID_LIKE="rhel fedora"
[2025-12-01 03:15:36] VERSION_ID="7"
[2025-12-01 03:15:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 03:15:36] ANSI_COLOR="0;31"
[2025-12-01 03:15:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 03:15:36] HOME_URL="https://www.centos.org/"
[2025-12-01 03:15:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 03:15:36] 
[2025-12-01 03:15:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 03:15:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 03:15:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 03:15:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 03:15:36] 
[2025-12-01 03:15:36] 2025-12-01 02:15:04,872 | INFO     | ***************************************
[2025-12-01 03:15:36] 2025-12-01 02:15:05,374 | INFO     | executing command: df -mP /tmp/job_10937278/atlas/pilot/slots/0
[2025-12-01 03:15:36] 2025-12-01 02:15:05,380 | INFO     | sufficient remaining disk space (226564767744 B)
[2025-12-01 03:15:36] 2025-12-01 02:15:05,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 03:15:36] 2025-12-01 02:15:05,380 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 03:15:36] 2025-12-01 02:15:05,381 | INFO     | update_server=False
[2025-12-01 03:15:36] 2025-12-01 02:15:05,381 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 03:15:36] 2025-12-01 02:15:05,381 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:15:36] 2025-12-01 02:15:05,394 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 03:15:36] 2025-12-01 02:15:05,394 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 03:15:36] 2025-12-01 02:15:05,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:15:36] 2025-12-01 02:15:05,394 | INFO     | will abort loop
[2025-12-01 03:15:36] 2025-12-01 02:15:05,602 | INFO     | all payload control threads have been joined
[2025-12-01 03:15:36] 2025-12-01 02:15:06,163 | INFO     | all data control threads have been joined
[2025-12-01 03:15:36] 2025-12-01 02:15:06,384 | INFO     | [job] retrieve thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:06,386 | INFO     | [job] queue monitor thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:06,399 | INFO     | [job] job monitor thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:06,600 | INFO     | [monitor] cgroup control has ended
[2025-12-01 03:15:36] 2025-12-01 02:15:06,603 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 03:15:36] 2025-12-01 02:15:06,607 | INFO     | [payload] control thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:06,628 | INFO     | [job] validate thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:06,651 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:06,758 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:07,012 | INFO     | all job control threads have been joined
[2025-12-01 03:15:36] 2025-12-01 02:15:07,125 | INFO     | [payload] failed_post thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:07,168 | INFO     | [data] control thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:07,188 | INFO     | [data] copytool_in thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:07,394 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:07,437 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:07,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 03:15:36] 2025-12-01 02:15:07,951 | INFO     | [payload] validate_post thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:08,017 | INFO     | [job] control thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:08,608 | INFO     | [data] copytool_out thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:11,932 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 03:15:36] 2025-12-01 02:15:13,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056616704)>']
[2025-12-01 03:15:36] 2025-12-01 02:15:18,289 | INFO     | all workflow threads have been joined
[2025-12-01 03:15:36] 2025-12-01 02:15:18,289 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 03:15:36] 2025-12-01 02:15:18,290 | INFO     | traces error code: 0
[2025-12-01 03:15:36] 2025-12-01 02:15:18,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 03:15:36] 2025-12-01 02:15:36,043 | INFO     | PID=7021 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 03:15:36] 2025-12-01 02:15:36,044 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 03:15:36] 2025-12-01 02:15:36,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 03:15:36] 2025-12-01 02:15:36,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 03:15:36] 2025-12-01 02:15:36,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 03:15:36] 2025-12-01 02:15:36,044 | INFO     | [monitor] control thread has ended
[2025-12-01 03:15:36] 2025-12-01 02:15:36,097 [wrapper] ==== pilot stdout END ====
[2025-12-01 03:15:36] 2025-12-01 02:15:36,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 03:15:36] 2025-12-01 02:15:36,099 [wrapper] pilotpid: 7021
[2025-12-01 03:15:36] 2025-12-01 02:15:36,100 [wrapper] Pilot exit status: 0
[2025-12-01 03:15:36] 2025-12-01 02:15:36,105 [wrapper] pandaids: 6893887079
[2025-12-01 03:15:36] 2025-12-01 02:15:36,125 [wrapper] cleanup supervisor_pilot 26199 7022
[2025-12-01 03:15:36] 2025-12-01 02:15:36,126 [wrapper] Test setup, not cleaning
[2025-12-01 03:15:36] 2025-12-01 02:15:36,128 [wrapper] apfmon messages muted
[2025-12-01 03:15:36] 2025-12-01 02:15:36,129 [wrapper] ==== wrapper stdout END ====
[2025-12-01 03:15:36] 2025-12-01 02:15:36,130 [wrapper] ==== wrapper stderr END ====
[2025-12-01 03:15:36]  *** Error codes and diagnostics ***
[2025-12-01 03:15:36]     "exeErrorCode": 0,
[2025-12-01 03:15:36]     "exeErrorDiag": "",
[2025-12-01 03:15:36]     "pilotErrorCode": 0,
[2025-12-01 03:15:36]     "pilotErrorDiag": "",
[2025-12-01 03:15:36]  *** Listing of results directory ***
[2025-12-01 03:15:36] total 1317284
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user      5112 Nov 21 00:03 queuedata.json
[2025-12-01 03:15:36] -rwx------ 1 mf493845 unix-user     36292 Nov 21 00:03 runpilot2-wrapper.sh
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user    576529 Nov 21 00:03 pilot3.tar.gz
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user       100 Nov 30 21:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 03:15:36] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 21:05 run_atlas
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user       105 Nov 30 21:05 job.xml
[2025-12-01 03:15:36] -rw-r--r-- 2 mf493845 unix-user 411113412 Nov 30 22:50 EVNT.47493127._000962.pool.root.1
[2025-12-01 03:15:36] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 22:50 start_atlas.sh
[2025-12-01 03:15:36] drwxrwx--x 2 mf493845 unix-user       100 Nov 30 22:50 shared
[2025-12-01 03:15:36] -rw-r--r-- 2 mf493845 unix-user    590097 Nov 30 22:50 input.tar.gz
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user      6389 Nov 30 22:50 init_data.xml
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user         0 Nov 30 22:50 boinc_setup_complete
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user      8192 Nov 30 22:50 boinc_mmap_file
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user         0 Nov 30 22:50 boinc_lockfile
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user      2785 Nov 30 22:50 pandaJob.out
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user    993245 Nov 30 22:50 agis_schedconf.cvmfs.json
[2025-12-01 03:15:36] drwx------ 5 mf493845 unix-user       440 Nov 30 22:50 pilot3
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user 926215291 Dec  1 03:14 HITS.47523449._009613.pool.root.1
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user      1031 Dec  1 03:14 memory_monitor_summary.json
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user   1516240 Dec  1 03:15 agis_ddmendpoints.agis.ALL.json
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user   1560233 Dec  1 03:15 log.47523449._009613.job.log.tgz.1
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user      8577 Dec  1 03:15 heartbeat.json
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user       744 Dec  1 03:15 pilotlog.txt
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user        95 Dec  1 03:15 pilot_heartbeat.json
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user   2283064 Dec  1 03:15 log.47523449._009613.job.log.1
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user       353 Dec  1 03:15 output.list
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user       620 Dec  1 03:15 runtime_log
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user   3860480 Dec  1 03:15 result.tar.gz
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user      9221 Dec  1 03:15 runtime_log.err
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user       650 Dec  1 03:15 9C7MDm0rSg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDeIKDmg2xZrm.diag
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user     21702 Dec  1 03:15 stderr.txt
[2025-12-01 03:15:36] HITS file was successfully produced:
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user 926215291 Dec  1 03:14 shared/HITS.pool.root.1
[2025-12-01 03:15:36]  *** Contents of shared directory: ***
[2025-12-01 03:15:36] total 1310356
[2025-12-01 03:15:36] -rw-r--r-- 2 mf493845 unix-user 411113412 Nov 30 22:50 ATLAS.root_0
[2025-12-01 03:15:36] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 22:50 start_atlas.sh
[2025-12-01 03:15:36] -rw-r--r-- 2 mf493845 unix-user    590097 Nov 30 22:50 input.tar.gz
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user 926215291 Dec  1 03:14 HITS.pool.root.1
[2025-12-01 03:15:36] -rw------- 1 mf493845 unix-user   3860480 Dec  1 03:15 result.tar.gz
03:15:38 (1821): run_atlas exited; CPU time 121268.893457
03:15:38 (1821): called boinc_finish(0)

</stderr_txt>
]]>

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